Wall clock time and date at job start Tue Mar 31 2020 12:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.45395 * 122.55283 * 2 1 4 4 C 1.41172 * 129.34009 * 0.04273 * 3 2 1 5 5 C 1.36093 * 120.45302 * 179.97438 * 4 3 2 6 6 C 1.38844 * 120.59575 * 0.02562 * 5 4 3 7 7 C 1.37467 * 120.18740 * 0.04258 * 6 5 4 8 8 C 1.39738 * 111.82642 * 180.02562 * 3 2 1 9 9 S 1.75902 * 109.68401 * 359.75752 * 8 3 2 10 10 C 1.31820 * 122.55404 * 180.02562 * 2 1 3 11 11 C 1.50703 * 124.29888 * 359.95215 * 10 2 1 12 12 H 1.09002 * 109.47152 * 15.00132 * 11 10 2 13 13 C 1.53002 * 109.46966 * 255.00272 * 11 10 2 14 14 O 1.45199 * 109.46928 * 135.00099 * 11 10 2 15 15 C 1.34227 * 117.00010 * 209.99941 * 14 11 10 16 16 O 1.20830 * 119.99699 * 0.02562 * 15 14 11 17 17 C 1.50696 * 120.00298 * 180.02562 * 15 14 11 18 18 C 1.53004 * 109.47613 * 179.97438 * 17 15 14 19 19 C 1.50699 * 109.47299 * 180.02562 * 18 17 15 20 20 H 1.07995 * 119.99939 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99740 * 180.02562 * 19 18 17 22 22 N 1.31512 * 119.99964 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99974 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47410 * 90.00035 * 23 21 19 25 25 H 1.48502 * 109.46986 * 210.00087 * 23 21 19 26 26 H 1.48500 * 109.47288 * 329.99659 * 23 21 19 27 27 H 1.09003 * 109.46973 * 269.97684 * 1 2 3 28 28 H 1.08996 * 109.47380 * 29.97391 * 1 2 3 29 29 H 1.09005 * 109.47427 * 149.97599 * 1 2 3 30 30 H 1.08002 * 119.77084 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.70149 * 180.02562 * 5 4 3 32 32 H 1.07993 * 119.90793 * 180.02562 * 6 5 4 33 33 H 1.08004 * 119.91404 * 179.97438 * 7 6 5 34 34 H 1.08996 * 109.47407 * 60.00310 * 13 11 10 35 35 H 1.09000 * 109.46986 * 180.02562 * 13 11 10 36 36 H 1.09002 * 109.47075 * 299.99352 * 13 11 10 37 37 H 1.08996 * 109.47636 * 300.00323 * 17 15 14 38 38 H 1.09002 * 109.47104 * 60.00357 * 17 15 14 39 39 H 1.09005 * 109.46790 * 300.00823 * 18 17 15 40 40 H 1.08998 * 109.46735 * 59.99555 * 18 17 15 41 41 H 0.96998 * 120.00097 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2893 1.2255 0.0000 4 6 1.8506 2.5673 0.0008 5 6 2.7513 3.5876 0.0012 6 6 4.1149 3.3264 0.0002 7 6 4.5702 2.0293 -0.0020 8 6 3.6623 0.9655 -0.0006 9 16 3.9362 -0.7721 0.0059 10 6 2.2163 -1.1111 -0.0005 11 6 1.6239 -2.4968 -0.0001 12 1 0.5681 -2.4407 -0.2653 13 6 1.7676 -3.1124 1.3932 14 8 2.3231 -3.3223 -0.9686 15 6 1.6193 -4.3045 -1.5530 16 8 0.4573 -4.4687 -1.2653 17 6 2.2782 -5.2024 -2.5681 18 6 1.2639 -6.2294 -3.0756 19 6 1.9231 -7.1277 -4.0902 20 1 2.9618 -6.9811 -4.3471 21 6 1.2001 -8.1367 -4.6905 22 7 1.7753 -8.9203 -5.5763 23 14 -0.5966 -8.3896 -4.2466 24 1 -1.4493 -7.5783 -5.1520 25 1 -0.9453 -9.8257 -4.3933 26 1 -0.8238 -7.9663 -2.8414 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3634 0.8902 -0.5134 29 1 -0.3634 -0.8898 -0.5142 30 1 0.7928 2.7857 0.0011 31 1 2.4022 4.6096 0.0022 32 1 4.8199 4.1444 0.0010 33 1 5.6319 1.8311 -0.0031 34 1 1.2428 -2.4928 2.1202 35 1 1.3396 -4.1149 1.3934 36 1 2.8234 -3.1687 1.6584 37 1 2.6381 -4.6030 -3.4043 38 1 3.1179 -5.7203 -2.1044 39 1 0.9044 -6.8288 -2.2391 40 1 0.4240 -5.7119 -3.5391 41 1 1.2666 -9.6299 -5.9989 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813084782.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:43 Heat of formation + Delta-G solvation = -75.773442 kcal Electronic energy + Delta-G solvation = -23181.399368 eV Core-core repulsion = 19730.394979 eV Total energy + Delta-G solvation = -3451.004389 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.73759 -40.62356 -38.39081 -36.90768 -35.65359 -33.63532 -32.97062 -32.11506 -30.60281 -28.60160 -28.48135 -25.37138 -24.01707 -23.62031 -22.43228 -21.44914 -20.26345 -19.43756 -19.13228 -18.36595 -17.46473 -17.21430 -16.67956 -16.31947 -16.18029 -15.77239 -15.53505 -15.13269 -14.90095 -14.82385 -14.66990 -14.35163 -14.01903 -13.77311 -13.72835 -13.44375 -13.35742 -13.11136 -12.95286 -12.54700 -12.38211 -12.26489 -12.11286 -12.03288 -11.92171 -11.81761 -11.72985 -11.52486 -11.48770 -11.39759 -10.79881 -10.54298 -9.50267 -8.66981 -8.32681 -6.37251 -0.36312 0.27419 0.46294 0.98495 1.06718 1.15709 1.34093 1.35961 1.49675 1.69944 2.33847 2.74710 3.02563 3.22000 3.69147 3.74221 3.84774 3.87511 3.99091 4.09598 4.26892 4.29573 4.33583 4.35227 4.41802 4.56565 4.58618 4.65644 4.69154 4.72140 4.83043 4.97600 5.01299 5.06679 5.13840 5.22611 5.31730 5.34036 5.38039 5.47459 5.53304 5.57091 5.93540 6.20145 6.65763 6.74549 7.27810 8.82961 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.024460 B = 0.002632 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.448471 B =10636.957125 C =10927.516918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.070 4.070 3 C -0.094 4.094 4 C -0.082 4.082 5 C -0.120 4.120 6 C -0.096 4.096 7 C -0.100 4.100 8 C -0.157 4.157 9 S 0.094 5.906 10 C -0.188 4.188 11 C 0.147 3.853 12 H 0.100 0.900 13 C -0.159 4.159 14 O -0.354 6.354 15 C 0.471 3.529 16 O -0.533 6.533 17 C -0.092 4.092 18 C 0.004 3.996 19 C -0.533 4.533 20 H 0.049 0.951 21 C 0.014 3.986 22 N -0.942 5.942 23 Si 0.940 3.060 24 H -0.267 1.267 25 H -0.279 1.279 26 H -0.256 1.256 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.062 0.938 30 H 0.147 0.853 31 H 0.159 0.841 32 H 0.160 0.840 33 H 0.139 0.861 34 H 0.097 0.903 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.019 0.981 40 H 0.017 0.983 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.577 28.468 16.728 33.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.083 4.083 3 C -0.102 4.102 4 C -0.102 4.102 5 C -0.139 4.139 6 C -0.117 4.117 7 C -0.123 4.123 8 C -0.272 4.272 9 S 0.362 5.638 10 C -0.303 4.303 11 C 0.091 3.909 12 H 0.118 0.882 13 C -0.216 4.216 14 O -0.271 6.271 15 C 0.316 3.684 16 O -0.423 6.423 17 C -0.130 4.130 18 C -0.033 4.033 19 C -0.571 4.571 20 H 0.068 0.932 21 C -0.184 4.184 22 N -0.583 5.583 23 Si 0.764 3.236 24 H -0.192 1.192 25 H -0.204 1.204 26 H -0.180 1.180 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.081 0.919 30 H 0.164 0.836 31 H 0.177 0.823 32 H 0.178 0.822 33 H 0.157 0.843 34 H 0.116 0.884 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.038 0.962 40 H 0.035 0.965 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.497 27.280 16.739 32.104 hybrid contribution -1.777 -0.003 -0.246 1.794 sum 0.720 27.278 16.493 31.884 Atomic orbital electron populations 1.20725 0.87858 1.03700 1.03932 1.19862 0.98060 0.89989 1.00395 1.19287 0.91189 0.94433 1.05296 1.21033 1.01537 0.89416 0.98207 1.21139 0.92996 1.00399 0.99406 1.21500 0.96791 0.96027 0.97341 1.20808 0.99068 0.91260 1.01155 1.23075 0.97665 0.98001 1.08479 1.84260 1.03601 0.97319 1.78645 1.23330 0.97593 0.96816 1.12543 1.21151 0.96431 0.84338 0.89012 0.88240 1.22173 1.03890 1.01634 0.93913 1.86624 1.44782 1.42414 1.53297 1.24318 0.85323 0.78880 0.79857 1.90594 1.19029 1.70111 1.62539 1.21357 1.00367 0.95417 0.95834 1.19311 0.94753 0.93681 0.95602 1.21326 0.98531 1.14451 1.22743 0.93223 1.25824 1.02923 0.95245 0.94422 1.70023 1.38876 1.20299 1.29059 0.85799 0.80135 0.77613 0.80018 1.19242 1.20407 1.18043 0.88856 0.89305 0.91881 0.83570 0.82313 0.82194 0.84328 0.88392 0.91926 0.91005 0.87144 0.86882 0.96229 0.96494 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.74 9.68 71.23 0.69 -1.05 16 2 C -0.07 -1.55 5.97 -18.80 -0.11 -1.67 16 3 C -0.09 -1.96 6.01 -20.35 -0.12 -2.09 16 4 C -0.08 -1.22 9.73 22.49 0.22 -1.00 16 5 C -0.12 -1.35 9.95 21.92 0.22 -1.13 16 6 C -0.10 -1.14 10.03 22.23 0.22 -0.91 16 7 C -0.10 -1.68 10.07 22.48 0.23 -1.45 16 8 C -0.16 -3.43 6.48 23.03 0.15 -3.28 16 9 S 0.09 2.30 23.05 -56.49 -1.30 1.00 16 10 C -0.19 -4.73 5.33 24.91 0.13 -4.60 16 11 C 0.15 4.00 2.79 29.85 0.08 4.09 16 12 H 0.10 2.80 5.14 -2.39 -0.01 2.79 16 13 C -0.16 -3.67 9.53 71.98 0.69 -2.98 16 14 O -0.35 -11.51 9.73 -51.39 -0.50 -12.01 16 15 C 0.47 17.50 7.93 71.23 0.56 18.06 16 16 O -0.53 -22.09 15.20 21.95 0.33 -21.75 16 17 C -0.09 -3.62 5.75 29.85 0.17 -3.45 16 18 C 0.00 0.20 3.33 29.85 0.10 0.30 16 19 C -0.53 -30.52 9.66 25.60 0.25 -30.27 16 20 H 0.05 3.02 7.99 -2.91 -0.02 3.00 16 21 C 0.01 0.81 5.47 84.66 0.46 1.28 16 22 N -0.94 -58.75 13.96 21.45 0.30 -58.45 16 23 Si 0.94 45.67 27.47 68.60 1.88 47.56 16 24 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 25 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 26 H -0.26 -12.15 6.54 99.48 0.65 -11.50 16 27 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.09 1.17 7.59 -2.39 -0.02 1.15 16 29 H 0.06 1.21 6.39 -2.38 -0.02 1.20 16 30 H 0.15 1.47 7.64 -2.91 -0.02 1.44 16 31 H 0.16 0.77 8.06 -2.91 -0.02 0.74 16 32 H 0.16 0.87 8.06 -2.91 -0.02 0.85 16 33 H 0.14 1.86 8.06 -2.91 -0.02 1.83 16 34 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 38 H 0.11 4.11 8.14 -2.39 -0.02 4.09 16 39 H 0.02 0.97 7.16 -2.38 -0.02 0.95 16 40 H 0.02 0.83 7.52 -2.39 -0.02 0.81 16 41 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -71.28 358.65 5.63 -65.64 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: 0.98 Total: 8.16 kcal Atomic # 6 Polarization: -34.08 SS G_CDS: 3.94 Total: -30.15 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: 0.30 Total: -58.45 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -0.17 Total: -33.77 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.88 Total: 47.56 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -1.30 Total: 1.00 kcal Total: -71.28 5.63 -65.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813084782.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.129 kcal (2) G-P(sol) polarization free energy of solvation -71.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds