Wall clock time and date at job start Tue Mar 31 2020 11:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47362 * 2 1 4 4 C 1.52995 * 109.47229 * 120.00184 * 2 1 3 5 5 N 1.46500 * 109.47301 * 181.14624 * 4 2 1 6 6 O 1.21798 * 120.00250 * 135.00423 * 5 4 2 7 7 O 1.21798 * 119.99504 * 314.99119 * 5 4 2 8 8 O 1.45204 * 109.47218 * 240.00061 * 2 1 3 9 9 C 1.34863 * 116.99923 * 87.72508 * 8 2 1 10 10 O 1.21596 * 119.99961 * 355.09370 * 9 8 2 11 11 C 1.46712 * 119.99899 * 175.09046 * 9 8 2 12 12 C 1.36220 * 125.44814 * 185.33423 * 11 9 8 13 13 C 1.41657 * 107.74265 * 179.90543 * 12 11 9 14 14 C 1.40050 * 133.33920 * 180.10055 * 13 12 11 15 15 C 1.36562 * 119.82804 * 180.28050 * 14 13 12 16 16 C 1.38866 * 120.60766 * 359.97438 * 15 14 13 17 17 C 1.37840 * 120.63129 * 0.02562 * 16 15 14 18 18 C 1.39094 * 119.81926 * 359.97438 * 17 16 15 19 19 N 1.37816 * 133.14677 * 180.02562 * 18 17 16 20 20 C 1.36870 * 125.62451 * 0.02562 * 19 18 17 21 21 H 1.08006 * 120.00389 * 141.81140 * 20 19 18 22 22 C 1.39017 * 120.00019 * 321.80756 * 20 19 18 23 23 N 1.31344 * 120.00151 * 341.24989 * 22 20 19 24 24 Si 1.86799 * 120.00201 * 161.24810 * 22 20 19 25 25 H 1.48500 * 109.47380 * 65.00351 * 24 22 20 26 26 H 1.48501 * 109.47646 * 185.00612 * 24 22 20 27 27 H 1.48512 * 109.47170 * 305.00429 * 24 22 20 28 28 H 1.08996 * 109.47497 * 299.99957 * 1 2 3 29 29 H 1.09008 * 109.47098 * 60.00143 * 1 2 3 30 30 H 1.08997 * 109.47485 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46797 * 301.14509 * 4 2 1 32 32 H 1.09002 * 109.47064 * 61.13788 * 4 2 1 33 33 H 1.08003 * 126.12677 * 0.03108 * 12 11 9 34 34 H 1.07995 * 120.08152 * 0.27415 * 14 13 12 35 35 H 1.08000 * 119.69596 * 180.02562 * 15 14 13 36 36 H 1.07999 * 119.68151 * 180.02562 * 16 15 14 37 37 H 1.08004 * 120.08844 * 179.97438 * 17 16 15 38 38 H 0.96998 * 119.99918 * 185.06814 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5047 -0.6974 1.2631 6 8 4.0996 -0.4215 2.2895 7 8 4.1275 -0.9537 0.2483 8 8 2.0140 -0.6845 -1.1856 9 6 2.1731 0.0588 -2.2996 10 8 1.8305 1.2255 -2.3061 11 6 2.7596 -0.5403 -3.5036 12 6 3.0650 0.1285 -4.6503 13 6 3.6106 -0.8070 -5.5634 14 6 4.0966 -0.7011 -6.8726 15 6 4.5664 -1.8111 -7.5146 16 6 4.5677 -3.0468 -6.8811 17 6 4.0944 -3.1762 -5.5930 18 6 3.6108 -2.0600 -4.9184 19 7 3.0860 -1.8749 -3.6576 20 6 2.9160 -2.8512 -2.7136 21 1 3.1001 -2.6332 -1.6719 22 6 2.5061 -4.1235 -3.0955 23 7 1.9345 -4.3063 -4.2638 24 14 2.7684 -5.5733 -1.9472 25 1 1.9505 -5.3884 -0.7216 26 1 2.3595 -6.8266 -2.6307 27 1 4.2040 -5.6575 -1.5762 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6599 -0.2194 2.1390 32 1 1.6934 -1.7547 1.2390 33 1 2.9194 1.1835 -4.8302 34 1 4.0998 0.2559 -7.3731 35 1 4.9411 -1.7269 -8.5240 36 1 4.9430 -3.9148 -7.4028 37 1 4.0991 -4.1416 -5.1088 38 1 1.5823 -5.1786 -4.5003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814038884.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:18 Heat of formation + Delta-G solvation = -32.088174 kcal Electronic energy + Delta-G solvation = -27259.162534 eV Core-core repulsion = 23263.759266 eV Total energy + Delta-G solvation = -3995.403268 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.07312 -40.56529 -39.54696 -36.60185 -36.17753 -35.92467 -33.69078 -33.58364 -30.74474 -29.58890 -29.04091 -28.17935 -24.96503 -24.64219 -23.73911 -21.75316 -21.02827 -20.42590 -19.38629 -18.69597 -18.47486 -18.04465 -17.74305 -17.09870 -15.90772 -15.64840 -15.29071 -14.87471 -14.75346 -14.06285 -14.00772 -13.56376 -13.13280 -12.98853 -12.90596 -12.76856 -12.68719 -12.23782 -11.95911 -11.78614 -11.46778 -11.33598 -11.30756 -11.11186 -11.05674 -10.85249 -10.79832 -10.66898 -10.45429 -10.23892 -10.12205 -9.81404 -9.21011 -8.68456 -7.20618 -6.92344 -6.65910 -4.46986 0.66106 1.62960 1.73870 2.74392 2.80160 2.91025 2.93696 2.97368 3.02120 3.70147 3.81961 4.05548 4.24206 4.43717 4.52231 4.63444 4.72739 4.91087 5.07150 5.19150 5.51196 5.67880 5.83971 5.92243 5.96163 6.13020 6.39169 6.41040 6.51964 6.59119 6.73914 6.88196 7.00920 7.08202 7.13223 7.47438 7.57652 7.65191 7.71554 7.88760 8.01497 8.30451 8.34941 8.77027 9.24421 10.11667 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.012391 B = 0.005756 C = 0.004629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.127171 B = 4862.994965 C = 6047.117132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.076 3.924 3 H 0.095 0.905 4 C -0.010 4.010 5 N -0.024 5.024 6 O -0.187 6.187 7 O -0.117 6.117 8 O -0.315 6.315 9 C 0.554 3.446 10 O -0.529 6.529 11 C -0.021 4.021 12 C -0.163 4.163 13 C -0.129 4.129 14 C -0.086 4.086 15 C -0.156 4.156 16 C -0.150 4.150 17 C -0.048 4.048 18 C 0.089 3.911 19 N -0.230 5.230 20 C -0.337 4.337 21 H 0.125 0.875 22 C 0.052 3.948 23 N -0.815 5.815 24 Si 0.928 3.072 25 H -0.269 1.269 26 H -0.276 1.276 27 H -0.260 1.260 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.132 0.868 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.286 2.160 6.382 7.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.019 3.981 3 H 0.113 0.887 4 C -0.128 4.128 5 N 0.499 4.501 6 O -0.397 6.397 7 O -0.346 6.346 8 O -0.232 6.232 9 C 0.403 3.597 10 O -0.419 6.419 11 C -0.134 4.134 12 C -0.191 4.191 13 C -0.134 4.134 14 C -0.105 4.105 15 C -0.175 4.175 16 C -0.171 4.171 17 C -0.068 4.068 18 C -0.027 4.027 19 N 0.109 4.891 20 C -0.465 4.465 21 H 0.142 0.858 22 C -0.162 4.162 23 N -0.443 5.443 24 Si 0.752 3.248 25 H -0.194 1.194 26 H -0.201 1.201 27 H -0.184 1.184 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.163 0.837 32 H 0.166 0.834 33 H 0.150 0.850 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.132 0.868 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.341 2.078 6.653 7.730 hybrid contribution -0.065 -0.752 0.613 0.972 sum -3.406 1.325 7.266 8.133 Atomic orbital electron populations 1.22154 0.91714 1.04204 1.04239 1.22595 0.96259 0.96803 0.82447 0.88732 1.24844 0.77044 1.08438 1.02441 1.44594 1.06276 0.98595 1.00610 1.94528 1.71949 1.51465 1.21804 1.94728 1.69175 1.48411 1.22268 1.87020 1.77300 1.40571 1.18275 1.20046 0.74222 0.83539 0.81877 1.90787 1.49850 1.17298 1.83981 1.18894 1.13866 0.86905 0.93765 1.20254 1.08977 0.98303 0.91538 1.17906 1.07259 0.93053 0.95160 1.20040 0.99835 0.97569 0.93084 1.20276 1.04829 0.93182 0.99182 1.20561 1.04829 0.96854 0.94887 1.20098 0.96661 0.96430 0.93580 1.18108 1.02569 0.94692 0.87358 1.40096 1.34913 1.04405 1.09709 1.20093 1.47265 0.88491 0.90683 0.85806 1.25689 0.93856 0.99693 0.96920 1.69967 1.28099 1.25584 1.20685 0.85967 0.80139 0.79048 0.79650 1.19441 1.20103 1.18442 0.90555 0.89891 0.90570 0.83652 0.83435 0.84969 0.87715 0.87876 0.87642 0.86808 0.90553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 9.52 37.16 0.35 -1.47 16 2 C 0.08 1.05 2.62 -26.74 -0.07 0.98 16 3 H 0.09 1.37 7.32 -51.93 -0.38 0.99 16 4 C -0.01 -0.12 6.20 -4.04 -0.03 -0.14 16 5 N -0.02 -0.37 4.23 -10.61 -0.04 -0.42 16 6 O -0.19 -2.94 19.22 -29.46 -0.57 -3.50 16 7 O -0.12 -2.23 17.36 -36.10 -0.63 -2.86 16 8 O -0.32 -6.05 6.01 -47.94 -0.29 -6.34 16 9 C 0.55 12.14 7.84 34.15 0.27 12.40 16 10 O -0.53 -11.60 16.15 -19.34 -0.31 -11.91 16 11 C -0.02 -0.51 6.76 -82.27 -0.56 -1.06 16 12 C -0.16 -3.77 10.55 -39.00 -0.41 -4.19 16 13 C -0.13 -3.03 6.16 -106.89 -0.66 -3.69 16 14 C -0.09 -1.75 10.06 -39.51 -0.40 -2.15 16 15 C -0.16 -2.97 9.97 -39.95 -0.40 -3.37 16 16 C -0.15 -3.04 10.02 -39.49 -0.40 -3.44 16 17 C -0.05 -1.12 8.57 -39.41 -0.34 -1.46 16 18 C 0.09 2.22 6.09 -83.84 -0.51 1.71 16 19 N -0.23 -5.85 2.83 -56.10 -0.16 -6.01 16 20 C -0.34 -8.33 8.85 -15.01 -0.13 -8.46 16 21 H 0.12 2.99 6.64 -52.48 -0.35 2.64 16 22 C 0.05 1.23 4.39 -17.47 -0.08 1.15 16 23 N -0.82 -20.19 10.96 55.50 0.61 -19.59 16 24 Si 0.93 18.14 29.60 -169.99 -5.03 13.11 16 25 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 26 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 27 H -0.26 -5.12 7.11 56.52 0.40 -4.71 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 1.08 8.09 -51.92 -0.42 0.66 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.15 1.01 8.11 -51.93 -0.42 0.59 16 32 H 0.15 1.45 8.14 -51.93 -0.42 1.02 16 33 H 0.13 2.77 8.06 -52.48 -0.42 2.34 16 34 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 35 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.11 1.83 8.06 -52.49 -0.42 1.40 16 37 H 0.11 2.69 6.43 -52.48 -0.34 2.36 16 38 H 0.28 6.53 8.31 -40.82 -0.34 6.19 16 LS Contribution 336.84 15.07 5.08 5.08 Total: -1.00 -29.91 336.84 -8.70 -38.60 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -4.00 Total: 7.02 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -3.35 Total: -13.19 kcal Atomic # 7 Polarization: -26.42 SS G_CDS: 0.40 Total: -26.01 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -1.79 Total: -24.61 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.91 -8.70 -38.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814038884.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.512 kcal (2) G-P(sol) polarization free energy of solvation -29.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds