Wall clock time and date at job start Tue Mar 31 2020 11:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46723 * 2 1 4 4 C 1.53002 * 109.47044 * 240.00495 * 2 1 3 5 5 N 1.46505 * 109.47028 * 179.97438 * 4 2 1 6 6 O 1.21798 * 119.99595 * 44.99640 * 5 4 2 7 7 O 1.21802 * 120.00050 * 225.00047 * 5 4 2 8 8 O 1.45195 * 109.47277 * 120.00104 * 2 1 3 9 9 C 1.34870 * 117.00125 * 270.00234 * 8 2 1 10 10 O 1.21593 * 120.00103 * 5.14093 * 9 8 2 11 11 C 1.46716 * 120.00028 * 185.14568 * 9 8 2 12 12 C 1.36210 * 125.45110 * 174.58794 * 11 9 8 13 13 C 1.41655 * 107.74371 * 180.27237 * 12 11 9 14 14 C 1.40050 * 133.33755 * 179.75382 * 13 12 11 15 15 C 1.36562 * 119.82843 * 180.02562 * 14 13 12 16 16 C 1.38865 * 120.60270 * 359.95885 * 15 14 13 17 17 C 1.37834 * 120.63910 * 0.02562 * 16 15 14 18 18 C 1.39093 * 119.81623 * 0.02562 * 17 16 15 19 19 N 1.37823 * 133.15065 * 180.02562 * 18 17 16 20 20 C 1.36872 * 125.62312 * 359.97438 * 19 18 17 21 21 H 1.07997 * 119.99807 * 147.66710 * 20 19 18 22 22 C 1.39019 * 119.99988 * 327.67012 * 20 19 18 23 23 N 1.31343 * 120.00072 * 334.55121 * 22 20 19 24 24 Si 1.86803 * 120.00166 * 154.54693 * 22 20 19 25 25 H 1.48504 * 109.46858 * 270.00328 * 24 22 20 26 26 H 1.48498 * 109.46853 * 29.99779 * 24 22 20 27 27 H 1.48497 * 109.47327 * 149.99885 * 24 22 20 28 28 H 1.09002 * 109.46793 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47320 * 299.99472 * 1 2 3 30 30 H 1.08998 * 109.47400 * 59.99832 * 1 2 3 31 31 H 1.08999 * 109.46957 * 299.99362 * 4 2 1 32 32 H 1.08998 * 109.47289 * 59.99605 * 4 2 1 33 33 H 1.08000 * 126.12676 * 0.02562 * 12 11 9 34 34 H 1.07999 * 120.08300 * 359.97174 * 14 13 12 35 35 H 1.07997 * 119.70097 * 179.97438 * 15 14 13 36 36 H 1.07999 * 119.67865 * 180.02562 * 16 15 14 37 37 H 1.07998 * 120.09434 * 179.97438 * 17 16 15 38 38 H 0.97004 * 119.99652 * 353.66131 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5050 -0.7206 -1.2496 6 8 4.1143 -0.9933 -0.2308 7 8 4.1137 -0.4474 -2.2687 8 8 2.0140 -0.6845 1.1855 9 6 2.2181 0.0675 2.2863 10 8 1.9096 1.2437 2.2849 11 6 2.8124 -0.5335 3.4855 12 6 3.1626 0.1403 4.6163 13 6 3.7034 -0.7988 5.5285 14 6 4.2248 -0.6902 6.8237 15 6 4.6839 -1.8040 7.4668 16 6 4.6381 -3.0466 6.8485 17 6 4.1292 -3.1789 5.5745 18 6 3.6566 -2.0587 4.8987 19 7 3.1038 -1.8750 3.6496 20 6 2.8843 -2.8578 2.7226 21 1 2.0426 -2.7870 2.0497 22 6 3.7448 -3.9470 2.6473 23 7 4.9861 -3.8331 3.0611 24 14 3.1357 -5.5727 1.9576 25 1 2.5828 -6.4014 3.0589 26 1 2.0750 -5.3166 0.9503 27 1 4.2648 -6.2922 1.3154 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.6767 -1.7488 -1.2493 32 1 1.6766 -0.2073 -2.1393 33 1 3.0518 1.2012 4.7854 34 1 4.2646 0.2721 7.3124 35 1 5.0859 -1.7178 8.4654 36 1 5.0048 -3.9177 7.3711 37 1 4.0981 -4.1495 5.1018 38 1 5.3292 -2.9675 3.3329 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814038885.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:20 Heat of formation + Delta-G solvation = -47.882434 kcal Electronic energy + Delta-G solvation = -27403.182245 eV Core-core repulsion = 23407.094087 eV Total energy + Delta-G solvation = -3996.088158 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.26406 -42.43778 -41.20510 -38.12463 -37.73784 -37.43366 -35.69568 -34.84192 -32.31896 -30.93378 -30.60463 -29.89782 -26.52507 -26.05833 -25.13907 -23.10110 -22.75349 -22.06184 -21.31382 -20.17302 -19.91971 -19.46933 -19.16917 -18.55567 -17.54201 -17.40424 -17.06467 -16.56302 -15.91115 -15.62364 -15.37753 -15.10417 -14.83013 -14.80429 -14.39277 -14.29422 -13.90136 -13.78598 -13.52337 -13.21871 -12.84302 -12.64043 -12.49337 -12.44674 -12.34802 -12.22811 -12.17016 -12.13188 -11.97515 -11.91535 -11.76936 -11.57238 -10.89183 -10.58441 -9.38215 -8.88998 -8.58620 -6.34044 -0.68821 -0.18746 0.67174 0.96084 1.05862 1.44872 1.46929 1.54183 1.73278 2.18891 2.23513 2.60457 2.77537 2.89837 3.20919 3.32868 3.51992 3.62669 3.89101 3.93706 4.10868 4.35057 4.39576 4.51636 4.55059 4.62568 4.69572 4.85221 4.96529 5.06171 5.11814 5.16045 5.19126 5.31842 5.47615 5.74446 5.76780 5.85389 6.03179 6.07422 6.33911 6.43453 6.62514 6.93683 7.22747 8.12683 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.012570 B = 0.005942 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.044512 B = 4711.422510 C = 5991.313720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.063 3.937 3 H 0.083 0.917 4 C -0.004 4.004 5 N -0.021 5.021 6 O -0.217 6.217 7 O -0.142 6.142 8 O -0.326 6.326 9 C 0.554 3.446 10 O -0.539 6.539 11 C -0.059 4.059 12 C -0.171 4.171 13 C -0.146 4.146 14 C -0.085 4.085 15 C -0.148 4.148 16 C -0.127 4.127 17 C -0.106 4.106 18 C 0.021 3.979 19 N -0.252 5.252 20 C -0.416 4.416 21 H 0.112 0.888 22 C -0.008 4.008 23 N -0.830 5.830 24 Si 1.122 2.878 25 H -0.262 1.262 26 H -0.256 1.256 27 H -0.278 1.278 28 H 0.086 0.914 29 H 0.059 0.941 30 H 0.122 0.878 31 H 0.169 0.831 32 H 0.202 0.798 33 H 0.148 0.852 34 H 0.139 0.861 35 H 0.152 0.848 36 H 0.140 0.860 37 H 0.108 0.892 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.244 1.782 -5.085 9.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.007 3.993 3 H 0.101 0.899 4 C -0.120 4.120 5 N 0.498 4.502 6 O -0.423 6.423 7 O -0.372 6.372 8 O -0.242 6.242 9 C 0.403 3.597 10 O -0.432 6.432 11 C -0.172 4.172 12 C -0.199 4.199 13 C -0.150 4.150 14 C -0.104 4.104 15 C -0.166 4.166 16 C -0.148 4.148 17 C -0.126 4.126 18 C -0.094 4.094 19 N 0.086 4.914 20 C -0.544 4.544 21 H 0.129 0.871 22 C -0.219 4.219 23 N -0.456 5.456 24 Si 0.939 3.061 25 H -0.187 1.187 26 H -0.180 1.180 27 H -0.203 1.203 28 H 0.105 0.895 29 H 0.079 0.921 30 H 0.141 0.859 31 H 0.186 0.814 32 H 0.219 0.781 33 H 0.166 0.834 34 H 0.157 0.843 35 H 0.169 0.831 36 H 0.158 0.842 37 H 0.126 0.874 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.754 0.308 -5.601 10.397 hybrid contribution 0.180 1.940 0.027 1.948 sum -8.574 2.248 -5.574 10.470 Atomic orbital electron populations 1.22161 0.88525 1.05200 1.05411 1.23128 0.98553 0.96351 0.81300 0.89888 1.25244 0.73589 1.10134 1.03012 1.45251 1.07957 0.97215 0.99804 1.94856 1.71852 1.53072 1.22559 1.94458 1.72224 1.48296 1.22239 1.86974 1.76979 1.40419 1.19788 1.19798 0.73810 0.83758 0.82360 1.90747 1.51335 1.17010 1.84081 1.19419 1.16803 0.84922 0.96064 1.20546 1.07856 0.98757 0.92734 1.18292 1.07551 0.92256 0.96932 1.20524 0.98293 0.99768 0.91801 1.20819 1.03013 0.91712 1.01091 1.21069 1.00981 0.98900 0.93828 1.20456 1.00615 0.96212 0.95291 1.18732 1.07671 0.96770 0.86190 1.40489 1.37299 1.04287 1.09345 1.21060 1.15147 1.01398 1.16777 0.87083 1.28167 0.92099 1.06278 0.95338 1.70664 1.13961 1.28508 1.32434 0.82887 0.76095 0.69825 0.77312 1.18704 1.18013 1.20312 0.89550 0.92141 0.85923 0.81362 0.78138 0.83410 0.84284 0.83075 0.84187 0.87431 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.55 71.98 0.69 -2.21 16 2 C 0.06 1.70 2.67 30.59 0.08 1.78 16 3 H 0.08 2.45 7.25 -2.39 -0.02 2.43 16 4 C 0.00 -0.09 6.21 86.38 0.54 0.44 16 5 N -0.02 -0.68 4.23 -187.48 -0.79 -1.47 16 6 O -0.22 -9.66 17.31 25.32 0.44 -9.22 16 7 O -0.14 -4.53 19.22 18.88 0.36 -4.17 16 8 O -0.33 -13.04 5.92 -51.06 -0.30 -13.34 16 9 C 0.55 25.47 7.86 70.04 0.55 26.02 16 10 O -0.54 -24.58 16.17 19.53 0.32 -24.26 16 11 C -0.06 -3.00 6.76 39.87 0.27 -2.73 16 12 C -0.17 -8.16 10.55 22.64 0.24 -7.92 16 13 C -0.15 -6.86 6.16 -21.34 -0.13 -6.99 16 14 C -0.09 -3.26 10.06 22.32 0.22 -3.03 16 15 C -0.15 -5.12 9.97 22.03 0.22 -4.90 16 16 C -0.13 -4.92 10.02 22.32 0.22 -4.70 16 17 C -0.11 -5.02 8.33 22.38 0.19 -4.83 16 18 C 0.02 1.10 5.55 39.07 0.22 1.31 16 19 N -0.25 -13.39 2.70 -331.42 -0.89 -14.28 16 20 C -0.42 -21.57 8.84 84.09 0.74 -20.83 16 21 H 0.11 5.57 6.65 -2.91 -0.02 5.55 16 22 C -0.01 -0.41 4.18 84.95 0.35 -0.06 16 23 N -0.83 -45.35 11.43 21.67 0.25 -45.10 16 24 Si 1.12 42.90 29.99 68.60 2.06 44.96 16 25 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 26 H -0.26 -8.69 7.11 99.48 0.71 -7.98 16 27 H -0.28 -10.70 7.11 99.48 0.71 -9.99 16 28 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.17 2.89 8.14 -2.39 -0.02 2.87 16 32 H 0.20 1.87 8.11 -2.39 -0.02 1.85 16 33 H 0.15 6.33 8.06 -2.91 -0.02 6.30 16 34 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 35 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 36 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 37 H 0.11 5.39 6.09 -2.91 -0.02 5.37 16 38 H 0.27 16.06 7.00 -92.71 -0.65 15.41 16 Total: -1.00 -72.91 334.90 7.06 -65.85 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: 1.23 Total: 29.69 kcal Atomic # 6 Polarization: -33.05 SS G_CDS: 4.40 Total: -28.65 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -1.44 Total: -60.86 kcal Atomic # 8 Polarization: -51.81 SS G_CDS: 0.81 Total: -51.00 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.06 Total: 44.96 kcal Total: -72.91 7.06 -65.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814038885.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.964 kcal (2) G-P(sol) polarization free energy of solvation -72.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds