Wall clock time and date at job start Tue Mar 31 2020 12:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 119.99865 * 2 1 4 4 H 1.48501 * 109.47191 * 270.00155 * 3 2 1 5 5 H 1.48501 * 109.47107 * 30.00115 * 3 2 1 6 6 H 1.48500 * 109.47499 * 149.99993 * 3 2 1 7 7 C 1.37874 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99456 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00382 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47028 * 179.97438 * 9 7 2 11 11 O 1.42905 * 109.46989 * 179.97438 * 10 9 7 12 12 C 1.35907 * 117.00045 * 180.02562 * 11 10 9 13 13 C 1.38874 * 119.97655 * 0.02562 * 12 11 10 14 14 C 1.38260 * 120.25699 * 180.02562 * 13 12 11 15 15 C 1.37986 * 120.21254 * 359.67881 * 14 13 12 16 16 C 1.39672 * 119.95720 * 0.57346 * 15 14 13 17 17 C 1.47519 * 120.13043 * 179.72072 * 16 15 14 18 18 N 1.29692 * 119.99928 * 359.72837 * 17 16 15 19 19 N 1.40102 * 120.00203 * 180.02562 * 18 17 16 20 20 C 1.36694 * 126.01980 * 89.99329 * 19 18 17 21 21 O 1.35655 * 126.00603 * 0.02562 * 20 19 18 22 22 N 1.30932 * 107.99011 * 179.74333 * 20 19 18 23 23 N 1.40096 * 108.02756 * 0.26374 * 22 20 19 24 24 C 1.30927 * 108.02725 * 0.02562 * 23 22 20 25 25 O 1.35656 * 126.00509 * 180.02562 * 24 23 22 26 26 C 1.38424 * 119.98071 * 180.02562 * 12 11 10 27 27 H 0.96995 * 120.00516 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47095 * 59.99857 * 9 7 2 29 29 H 1.09001 * 109.46741 * 299.99331 * 9 7 2 30 30 H 1.08997 * 109.47166 * 60.00064 * 10 9 7 31 31 H 1.08997 * 109.47599 * 299.99689 * 10 9 7 32 32 H 1.07994 * 119.87182 * 359.97438 * 13 12 11 33 33 H 1.07998 * 119.89225 * 179.97438 * 14 13 12 34 34 H 1.08011 * 120.02486 * 180.29924 * 15 14 13 35 35 H 1.07999 * 120.00130 * 179.73006 * 17 16 15 36 36 H 0.96696 * 114.00102 * 269.71320 * 21 20 19 37 37 H 0.96693 * 114.00125 * 89.97631 * 25 24 23 38 38 H 1.08004 * 120.10510 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 8 1.5308 -4.8996 -0.0032 12 6 2.2710 -6.0394 -0.0036 13 6 3.6578 -5.9661 -0.0030 14 6 4.4165 -7.1220 -0.0039 15 6 3.8007 -8.3568 0.0012 16 6 2.4066 -8.4409 -0.0048 17 6 1.7443 -9.7591 -0.0056 18 7 2.4567 -10.8427 -0.0060 19 7 1.8278 -12.0947 -0.0073 20 6 1.4674 -12.8120 -1.1137 21 8 1.6563 -12.4371 -2.4036 22 7 0.9133 -13.9274 -0.7096 23 7 0.9105 -13.9274 0.6914 24 6 1.4625 -12.8119 1.0977 25 8 1.6464 -12.4369 2.3884 26 6 1.6422 -7.2726 -0.0047 27 1 -0.4851 0.8400 0.0004 28 1 0.6247 -2.5563 -0.8919 29 1 0.6241 -2.5575 0.8881 30 1 2.8719 -3.6050 0.8873 31 1 2.8719 -3.6035 -0.8927 32 1 4.1456 -5.0026 -0.0026 33 1 5.4946 -7.0581 -0.0039 34 1 4.3964 -9.2578 0.0053 35 1 0.6661 -9.8217 -0.0058 36 1 0.9200 -11.9354 -2.7792 37 1 2.4910 -12.7206 2.7639 38 1 0.5637 -7.3307 -0.0056 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814232555.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:59 Heat of formation + Delta-G solvation = 43.727755 kcal Electronic energy + Delta-G solvation = -24349.815275 eV Core-core repulsion = 20389.992383 eV Total energy + Delta-G solvation = -3959.822891 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.54915 -40.13259 -38.60973 -38.02632 -37.53138 -36.56358 -33.52355 -32.81247 -31.23135 -30.16525 -30.05954 -29.25128 -25.56667 -24.57321 -23.15041 -22.74924 -22.60959 -21.60273 -20.49748 -19.28848 -19.20001 -18.00964 -17.77483 -16.98349 -16.46138 -15.96128 -15.91781 -15.57842 -15.52904 -15.09031 -14.55537 -14.30581 -13.74800 -13.53889 -13.41694 -13.22819 -12.98341 -12.50560 -12.48619 -12.42462 -11.97454 -11.72388 -11.58666 -11.42974 -11.02427 -10.91339 -10.83486 -10.66757 -10.06704 -10.05062 -9.91595 -9.79602 -9.42253 -9.11598 -8.55281 -8.20595 -6.20272 -4.25666 0.08653 0.96021 1.05271 1.29349 1.67041 1.74821 2.73213 2.85877 3.20402 3.26749 3.28882 3.53845 3.60154 3.90051 4.30788 4.42258 4.58400 4.67246 4.70578 4.95646 5.04135 5.07117 5.13527 5.16458 5.21935 5.48538 5.70118 5.81040 5.84463 6.03522 6.18617 6.23399 6.38654 6.47831 6.54273 6.56033 7.22003 7.33615 7.38363 7.49998 7.63647 7.85255 8.11306 8.79736 9.39417 10.91136 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.030157 B = 0.001923 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.262365 B =14559.519714 C =14663.671447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.063 3.937 11 O -0.312 6.312 12 C 0.140 3.860 13 C -0.175 4.175 14 C -0.089 4.089 15 C -0.111 4.111 16 C -0.057 4.057 17 C 0.218 3.782 18 N -0.273 5.273 19 N -0.384 5.384 20 C 0.410 3.590 21 O -0.430 6.430 22 N -0.288 5.288 23 N -0.289 5.289 24 C 0.410 3.590 25 O -0.433 6.433 26 C -0.115 4.115 27 H 0.264 0.736 28 H 0.028 0.972 29 H 0.029 0.971 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.138 0.862 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.412 0.588 37 H 0.415 0.585 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.993 -20.804 0.002 21.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.010 4.010 11 O -0.225 6.225 12 C 0.092 3.908 13 C -0.195 4.195 14 C -0.107 4.107 15 C -0.131 4.131 16 C -0.060 4.060 17 C 0.011 3.989 18 N -0.076 5.076 19 N -0.191 5.191 20 C 0.100 3.900 21 O -0.229 6.229 22 N -0.134 5.134 23 N -0.135 5.135 24 C 0.101 3.899 25 O -0.233 6.233 26 C -0.136 4.136 27 H 0.074 0.926 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.156 0.844 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.146 0.854 36 H 0.270 0.730 37 H 0.274 0.726 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.762 -22.586 0.008 23.309 hybrid contribution 0.588 2.700 0.000 2.763 sum 6.350 -19.886 0.008 20.875 Atomic orbital electron populations 1.69962 1.06117 1.27121 1.49413 1.24991 0.94923 0.99455 0.94798 0.86476 0.79726 0.82853 0.78269 1.20455 1.21004 1.19745 1.20941 0.93038 0.90126 1.52619 0.92326 1.19133 0.94150 0.88921 0.98981 1.23426 0.97256 0.80504 0.99860 1.86211 1.36398 1.13114 1.86794 1.18963 0.90065 0.87649 0.94100 1.21728 0.93207 1.00425 1.04130 1.20944 1.00152 0.91450 0.98137 1.21214 0.93038 0.98335 1.00500 1.17924 0.93366 0.88483 1.06252 1.25481 0.98635 0.91793 0.82971 1.75967 1.21239 0.88602 1.21769 1.48525 1.48938 1.14806 1.06786 1.21542 0.97203 0.89588 0.81628 1.84995 1.46458 1.75217 1.16247 1.78446 1.19236 1.14890 1.00858 1.78438 1.21010 1.13192 1.00820 1.21615 0.97597 0.89148 0.81577 1.84942 1.43832 1.78372 1.16151 1.20463 1.00421 0.88855 1.03879 0.92606 0.95334 0.95305 0.92851 0.92846 0.84408 0.85143 0.84919 0.85394 0.72974 0.72559 0.84359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.40 13.29 55.43 0.74 -24.66 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.53 -13.93 9.11 -34.44 -0.31 -14.24 16 8 H 0.06 1.46 7.74 -52.48 -0.41 1.06 16 9 C 0.03 0.61 5.34 -27.89 -0.15 0.47 16 10 C 0.06 1.20 4.68 37.16 0.17 1.37 16 11 O -0.31 -5.48 10.13 -19.45 -0.20 -5.68 16 12 C 0.14 1.94 6.68 -39.28 -0.26 1.68 16 13 C -0.18 -2.13 9.03 -39.34 -0.36 -2.49 16 14 C -0.09 -0.88 10.02 -39.67 -0.40 -1.28 16 15 C -0.11 -1.06 9.57 -39.14 -0.37 -1.43 16 16 C -0.06 -0.55 5.87 -105.06 -0.62 -1.17 16 17 C 0.22 1.81 10.83 -14.67 -0.16 1.65 16 18 N -0.27 -2.61 10.57 32.16 0.34 -2.27 16 19 N -0.38 -3.98 3.39 -15.06 -0.05 -4.03 16 20 C 0.41 4.36 9.40 -88.49 -0.83 3.53 16 21 O -0.43 -3.48 13.65 -18.66 -0.25 -3.74 16 22 N -0.29 -3.67 12.71 29.73 0.38 -3.29 16 23 N -0.29 -3.67 12.71 29.73 0.38 -3.29 16 24 C 0.41 4.35 9.40 -88.48 -0.83 3.52 16 25 O -0.43 -3.48 13.65 -18.67 -0.25 -3.73 16 26 C -0.12 -1.29 9.73 -39.00 -0.38 -1.67 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.95 7.65 -51.93 -0.40 0.55 16 31 H 0.05 0.95 7.66 -51.93 -0.40 0.55 16 32 H 0.14 1.65 6.28 -52.49 -0.33 1.32 16 33 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.13 1.15 7.55 -52.48 -0.40 0.75 16 35 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 36 H 0.41 1.10 9.06 45.56 0.41 1.51 16 37 H 0.42 1.23 9.06 45.56 0.41 1.64 16 38 H 0.14 1.34 8.06 -52.48 -0.42 0.91 16 LS Contribution 349.86 15.07 5.27 5.27 Total: -1.00 -33.75 349.86 -5.62 -39.37 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -2.35 Total: -0.82 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -4.60 Total: -8.51 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 1.78 Total: -37.55 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -0.71 Total: -13.14 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.75 -5.62 -39.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814232555.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.096 kcal (2) G-P(sol) polarization free energy of solvation -33.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds