Wall clock time and date at job start Tue Mar 31 2020 12:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 119.99865 * 2 1 4 4 H 1.48501 * 109.47191 * 270.00155 * 3 2 1 5 5 H 1.48501 * 109.47107 * 30.00115 * 3 2 1 6 6 H 1.48500 * 109.47499 * 149.99993 * 3 2 1 7 7 C 1.37874 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99456 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00382 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47028 * 179.97438 * 9 7 2 11 11 O 1.42905 * 109.46989 * 179.97438 * 10 9 7 12 12 C 1.35907 * 117.00045 * 180.02562 * 11 10 9 13 13 C 1.38874 * 119.97655 * 0.02562 * 12 11 10 14 14 C 1.38260 * 120.25699 * 180.02562 * 13 12 11 15 15 C 1.37986 * 120.21254 * 359.67881 * 14 13 12 16 16 C 1.39672 * 119.95720 * 0.57346 * 15 14 13 17 17 C 1.47519 * 120.13043 * 179.72072 * 16 15 14 18 18 N 1.29692 * 119.99928 * 359.72837 * 17 16 15 19 19 N 1.40102 * 120.00203 * 180.02562 * 18 17 16 20 20 C 1.36694 * 126.01980 * 89.99329 * 19 18 17 21 21 O 1.35655 * 126.00603 * 0.02562 * 20 19 18 22 22 N 1.30932 * 107.99011 * 179.74333 * 20 19 18 23 23 N 1.40096 * 108.02756 * 0.26374 * 22 20 19 24 24 C 1.30927 * 108.02725 * 0.02562 * 23 22 20 25 25 O 1.35656 * 126.00509 * 180.02562 * 24 23 22 26 26 C 1.38424 * 119.98071 * 180.02562 * 12 11 10 27 27 H 0.96995 * 120.00516 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47095 * 59.99857 * 9 7 2 29 29 H 1.09001 * 109.46741 * 299.99331 * 9 7 2 30 30 H 1.08997 * 109.47166 * 60.00064 * 10 9 7 31 31 H 1.08997 * 109.47599 * 299.99689 * 10 9 7 32 32 H 1.07994 * 119.87182 * 359.97438 * 13 12 11 33 33 H 1.07998 * 119.89225 * 179.97438 * 14 13 12 34 34 H 1.08011 * 120.02486 * 180.29924 * 15 14 13 35 35 H 1.07999 * 120.00130 * 179.73006 * 17 16 15 36 36 H 0.96696 * 114.00102 * 269.71320 * 21 20 19 37 37 H 0.96693 * 114.00125 * 89.97631 * 25 24 23 38 38 H 1.08004 * 120.10510 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 8 1.5308 -4.8996 -0.0032 12 6 2.2710 -6.0394 -0.0036 13 6 3.6578 -5.9661 -0.0030 14 6 4.4165 -7.1220 -0.0039 15 6 3.8007 -8.3568 0.0012 16 6 2.4066 -8.4409 -0.0048 17 6 1.7443 -9.7591 -0.0056 18 7 2.4567 -10.8427 -0.0060 19 7 1.8278 -12.0947 -0.0073 20 6 1.4674 -12.8120 -1.1137 21 8 1.6563 -12.4371 -2.4036 22 7 0.9133 -13.9274 -0.7096 23 7 0.9105 -13.9274 0.6914 24 6 1.4625 -12.8119 1.0977 25 8 1.6464 -12.4369 2.3884 26 6 1.6422 -7.2726 -0.0047 27 1 -0.4851 0.8400 0.0004 28 1 0.6247 -2.5563 -0.8919 29 1 0.6241 -2.5575 0.8881 30 1 2.8719 -3.6050 0.8873 31 1 2.8719 -3.6035 -0.8927 32 1 4.1456 -5.0026 -0.0026 33 1 5.4946 -7.0581 -0.0039 34 1 4.3964 -9.2578 0.0053 35 1 0.6661 -9.8217 -0.0058 36 1 0.9200 -11.9354 -2.7792 37 1 2.4910 -12.7206 2.7639 38 1 0.5637 -7.3307 -0.0056 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814232555.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:58 Heat of formation + Delta-G solvation = 15.034297 kcal Electronic energy + Delta-G solvation = -24351.059516 eV Core-core repulsion = 20389.992383 eV Total energy + Delta-G solvation = -3961.067133 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.32311 -41.14157 -39.25779 -39.03651 -38.18037 -37.42520 -35.45617 -33.62775 -32.63510 -31.33801 -30.85944 -30.29293 -27.11562 -25.66556 -23.92335 -23.67127 -23.59094 -22.82586 -21.61391 -20.04913 -19.92366 -19.08775 -18.50765 -18.25251 -17.68833 -17.01139 -16.94099 -16.72600 -16.58514 -16.31996 -15.88328 -15.04437 -14.56525 -14.53154 -14.41302 -14.31210 -14.08414 -13.73968 -13.67421 -13.33266 -13.17390 -12.89240 -12.70577 -12.58646 -12.54666 -12.38735 -11.97841 -11.72878 -11.57225 -11.49738 -11.37525 -10.81926 -10.71525 -10.60747 -9.93825 -9.21431 -8.25758 -6.38702 -0.67841 0.21779 0.33620 0.42424 0.88771 0.96254 1.42664 1.43840 1.54829 2.02468 2.09564 2.32742 2.53236 2.74565 3.09364 3.22739 3.70584 3.84272 3.84505 3.94967 4.13888 4.19854 4.25455 4.30883 4.36875 4.39807 4.45355 4.75086 4.76320 4.90861 5.23608 5.33484 5.36038 5.41118 5.50201 5.63246 5.76343 5.85359 6.08300 6.10385 6.50222 6.55990 6.59680 6.76861 7.31609 8.87027 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.030157 B = 0.001923 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.262365 B =14559.519714 C =14663.671447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.972 3.028 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.259 1.259 7 C -0.544 4.544 8 H 0.072 0.928 9 C 0.026 3.974 10 C 0.083 3.917 11 O -0.337 6.337 12 C 0.103 3.897 13 C -0.182 4.182 14 C -0.084 4.084 15 C -0.102 4.102 16 C -0.051 4.051 17 C 0.227 3.773 18 N -0.279 5.279 19 N -0.385 5.385 20 C 0.419 3.581 21 O -0.433 6.433 22 N -0.321 5.321 23 N -0.321 5.321 24 C 0.419 3.581 25 O -0.434 6.434 26 C -0.113 4.113 27 H 0.266 0.734 28 H -0.001 1.001 29 H -0.001 1.001 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.137 0.863 33 H 0.158 0.842 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.435 0.565 37 H 0.436 0.564 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.069 -21.263 -0.004 22.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.182 1.182 7 C -0.582 4.582 8 H 0.090 0.910 9 C -0.011 4.011 10 C 0.009 3.991 11 O -0.251 6.251 12 C 0.058 3.942 13 C -0.202 4.202 14 C -0.102 4.102 15 C -0.122 4.122 16 C -0.054 4.054 17 C 0.020 3.980 18 N -0.082 5.082 19 N -0.191 5.191 20 C 0.109 3.891 21 O -0.236 6.236 22 N -0.167 5.167 23 N -0.167 5.167 24 C 0.109 3.891 25 O -0.238 6.238 26 C -0.134 4.134 27 H 0.075 0.925 28 H 0.018 0.982 29 H 0.017 0.983 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.155 0.845 33 H 0.176 0.824 34 H 0.166 0.834 35 H 0.167 0.833 36 H 0.297 0.703 37 H 0.300 0.700 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 7.859 -23.068 0.000 24.370 hybrid contribution -0.030 2.720 0.001 2.720 sum 7.829 -20.348 0.001 21.802 Atomic orbital electron populations 1.70106 1.07985 1.28145 1.50752 1.26006 0.95785 1.03606 0.94346 0.85333 0.78646 0.77813 0.78575 1.19687 1.20974 1.18249 1.21413 0.93890 0.91029 1.51832 0.90971 1.18970 0.94644 0.91378 0.96114 1.22900 0.95362 0.79958 1.00872 1.86108 1.37206 1.13599 1.88211 1.19250 0.90940 0.86980 0.97066 1.21824 0.92628 1.01397 1.04362 1.21225 1.01437 0.90603 0.96914 1.21492 0.93138 0.98818 0.98754 1.17933 0.93444 0.88471 1.05521 1.25488 0.99648 0.90817 0.82019 1.75967 1.21307 0.88552 1.22348 1.48545 1.48963 1.15021 1.06597 1.21567 0.95988 0.89157 0.82391 1.84963 1.47887 1.75641 1.15065 1.78360 1.20956 1.16265 1.01108 1.78353 1.22637 1.14644 1.01069 1.21642 0.96542 0.88562 0.82348 1.84916 1.45598 1.78303 1.14946 1.20595 1.01238 0.88386 1.03153 0.92533 0.98236 0.98255 0.91805 0.91734 0.84546 0.82401 0.83395 0.83261 0.70281 0.70035 0.83304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.65 13.29 21.45 0.28 -54.36 16 2 C 0.00 0.06 5.46 84.65 0.46 0.53 16 3 Si 0.97 41.72 29.54 68.60 2.03 43.74 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 6 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 7 C -0.54 -28.95 9.11 25.60 0.23 -28.71 16 8 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 9 C 0.03 1.33 5.34 29.85 0.16 1.49 16 10 C 0.08 3.19 4.68 71.98 0.34 3.53 16 11 O -0.34 -12.04 10.13 -92.50 -0.94 -12.98 16 12 C 0.10 2.80 6.68 22.47 0.15 2.95 16 13 C -0.18 -4.17 9.03 22.43 0.20 -3.97 16 14 C -0.08 -1.42 10.02 22.21 0.22 -1.19 16 15 C -0.10 -1.62 9.57 22.56 0.22 -1.41 16 16 C -0.05 -0.84 5.87 -20.15 -0.12 -0.96 16 17 C 0.23 3.10 10.83 87.46 0.95 4.05 16 18 N -0.28 -4.54 10.57 -52.17 -0.55 -5.10 16 19 N -0.38 -7.18 3.39 -422.59 -1.43 -8.61 16 20 C 0.42 8.29 9.40 179.60 1.69 9.98 16 21 O -0.43 -6.14 13.65 -89.70 -1.22 -7.37 16 22 N -0.32 -7.98 12.71 -173.40 -2.20 -10.18 16 23 N -0.32 -7.98 12.71 -173.39 -2.20 -10.18 16 24 C 0.42 8.27 9.40 179.60 1.69 9.96 16 25 O -0.43 -6.11 13.65 -89.71 -1.22 -7.34 16 26 C -0.11 -2.36 9.73 22.65 0.22 -2.14 16 27 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 28 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 29 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 30 H 0.06 2.27 7.65 -2.39 -0.02 2.25 16 31 H 0.06 2.28 7.66 -2.39 -0.02 2.27 16 32 H 0.14 3.09 6.28 -2.91 -0.02 3.07 16 33 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 34 H 0.15 1.98 7.55 -2.90 -0.02 1.95 16 35 H 0.15 1.45 8.06 -2.91 -0.02 1.42 16 36 H 0.43 1.35 9.06 -74.06 -0.67 0.68 16 37 H 0.44 1.63 9.06 -74.06 -0.67 0.95 16 38 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -74.39 349.86 -1.26 -75.65 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -0.20 Total: 2.65 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: 6.41 Total: -5.91 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -6.11 Total: -88.44 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -3.39 Total: -27.68 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.74 kcal Total: -74.39 -1.26 -75.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814232555.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.680 kcal (2) G-P(sol) polarization free energy of solvation -74.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds