Wall clock time and date at job start Tue Mar 31 2020 12:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48505 * 109.47183 * 239.99617 * 3 2 1 5 5 H 1.48496 * 109.47425 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47216 * 119.99610 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46626 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47016 * 55.00506 * 11 10 9 13 13 N 1.46897 * 109.47488 * 294.99728 * 11 10 9 14 14 C 1.50707 * 109.46980 * 175.00014 * 11 10 9 15 15 N 1.30981 * 126.43911 * 254.71857 * 14 11 10 16 16 C 1.35213 * 105.57499 * 179.89499 * 15 14 11 17 17 C 1.48428 * 126.41094 * 180.13438 * 16 15 14 18 18 C 1.39346 * 120.11904 * 0.30472 * 17 16 15 19 19 C 1.38000 * 119.88030 * 179.97438 * 18 17 16 20 20 C 1.38346 * 120.11956 * 359.97438 * 19 18 17 21 21 C 1.38301 * 120.23844 * 0.02562 * 20 19 18 22 22 N 1.48018 * 119.93580 * 180.02562 * 21 20 19 23 23 O 1.21798 * 120.00254 * 0.02562 * 22 21 20 24 24 O 1.21800 * 119.99782 * 180.02562 * 22 21 20 25 25 C 1.38041 * 120.12083 * 359.74459 * 21 20 19 26 26 N 1.30752 * 107.17752 * 0.36731 * 16 15 14 27 27 O 1.21294 * 110.09708 * 359.76502 * 26 16 15 28 28 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 30 30 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 31 31 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 32 32 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 33 33 H 1.00902 * 110.99565 * 176.04500 * 13 11 10 34 34 H 1.00888 * 111.00369 * 300.00452 * 13 11 10 35 35 H 1.08003 * 120.05928 * 359.97438 * 18 17 16 36 36 H 1.07996 * 119.94212 * 180.02562 * 19 18 17 37 37 H 1.07992 * 119.87682 * 180.02562 * 20 19 18 38 38 H 1.08005 * 120.06067 * 180.27241 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9870 0.0012 12 1 0.7881 -5.0072 -0.8405 13 7 0.7291 -5.1182 1.2567 14 6 2.4550 -6.1299 -0.1227 15 7 2.6703 -6.8565 -1.1910 16 6 3.6206 -7.7506 -0.8365 17 6 4.2116 -8.7991 -1.7050 18 6 3.7960 -8.9266 -3.0289 19 6 4.3491 -9.9029 -3.8322 20 6 5.3151 -10.7538 -3.3255 21 6 5.7313 -10.6317 -2.0123 22 7 6.7657 -11.5453 -1.4772 23 8 7.2498 -12.4033 -2.1934 24 8 7.1327 -11.4391 -0.3207 25 6 5.1880 -9.6556 -1.2013 26 7 3.9179 -7.5219 0.4161 27 8 3.2581 -6.5961 0.8388 28 1 -0.4850 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6241 -2.5568 0.8903 31 1 2.8721 -3.6042 -0.8894 32 1 2.8721 -3.6043 0.8905 33 1 0.1648 -5.9546 1.2546 34 1 1.3491 -5.1022 2.0524 35 1 3.0422 -8.2625 -3.4256 36 1 4.0280 -10.0023 -4.8585 37 1 5.7457 -11.5161 -3.9577 38 1 5.5170 -9.5582 -0.1772 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818377725.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:49 Heat of formation + Delta-G solvation = 84.058423 kcal Electronic energy + Delta-G solvation = -24782.640172 eV Core-core repulsion = 20824.566150 eV Total energy + Delta-G solvation = -3958.074022 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.79751 -42.56658 -40.00949 -36.94431 -36.93071 -36.06234 -33.36719 -32.72836 -32.56657 -31.08167 -30.38291 -27.13113 -26.61518 -25.38220 -24.45719 -23.31889 -22.59681 -21.47365 -20.38605 -19.52893 -18.97590 -18.26618 -17.90648 -17.62296 -17.12306 -16.45266 -16.14465 -15.90608 -15.68529 -14.96846 -14.58236 -14.39646 -14.20340 -14.06681 -12.99391 -12.87475 -12.58866 -12.39108 -12.29534 -12.12091 -11.93508 -11.87840 -11.59625 -11.49607 -11.34666 -11.03522 -10.94006 -10.69382 -10.52750 -10.19510 -9.95550 -9.65930 -9.42385 -9.12683 -8.97507 -8.34785 -6.01671 -4.04315 -0.65315 -0.04137 0.81634 0.92876 1.04099 1.95602 2.58707 2.83146 2.93906 3.31645 3.36601 3.38703 3.53527 3.86120 3.96761 4.19040 4.27317 4.43684 4.51789 4.56409 4.66950 4.90709 5.03940 5.22750 5.25589 5.34502 5.39893 5.46078 5.59219 5.61473 5.70005 5.97673 6.26508 6.43832 6.88299 7.01993 7.24134 7.36944 7.65746 7.82611 7.84740 8.00949 8.37767 9.02528 9.59389 11.09115 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.023887 B = 0.002189 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.905239 B =12790.197890 C =12892.873235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.052 0.948 9 C 0.033 3.967 10 C -0.103 4.103 11 C 0.184 3.816 12 H 0.128 0.872 13 N -0.811 5.811 14 C 0.174 3.826 15 N -0.476 5.476 16 C 0.195 3.805 17 C -0.007 4.007 18 C -0.026 4.026 19 C -0.115 4.115 20 C -0.042 4.042 21 C -0.046 4.046 22 N 0.029 4.971 23 O -0.155 6.155 24 O -0.155 6.155 25 C -0.025 4.025 26 N -0.372 5.372 27 O 0.087 5.913 28 H 0.261 0.739 29 H 0.016 0.984 30 H 0.038 0.962 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.341 0.659 34 H 0.351 0.649 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.159 0.841 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.942 -21.744 -6.026 23.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.564 4.564 8 H 0.070 0.930 9 C -0.005 4.005 10 C -0.142 4.142 11 C 0.069 3.931 12 H 0.145 0.855 13 N -0.340 5.340 14 C -0.049 4.049 15 N -0.209 5.209 16 C -0.075 4.075 17 C -0.009 4.009 18 C -0.045 4.045 19 C -0.134 4.134 20 C -0.062 4.062 21 C -0.129 4.129 22 N 0.549 4.451 23 O -0.372 6.372 24 O -0.372 6.372 25 C -0.046 4.046 26 N -0.078 5.078 27 O 0.025 5.975 28 H 0.071 0.929 29 H 0.034 0.966 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.154 0.846 34 H 0.165 0.835 35 H 0.176 0.824 36 H 0.176 0.824 37 H 0.177 0.823 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 5.442 -21.071 -6.424 22.691 hybrid contribution 1.301 -0.068 0.328 1.344 sum 6.743 -21.139 -6.096 23.011 Atomic orbital electron populations 1.69952 1.05938 1.26694 1.50461 1.24978 0.94829 0.99099 0.95324 0.86693 0.79610 0.83306 0.78578 1.20356 1.21287 1.20262 1.21183 0.92886 0.91150 1.51131 0.92964 1.19015 0.93422 0.89526 0.98492 1.21876 0.99355 0.91551 1.01378 1.20988 0.89287 0.87185 0.95649 0.85451 1.58794 1.27005 1.45103 1.03069 1.31360 0.93752 0.97961 0.81855 1.71995 1.15617 1.06589 1.26687 1.23548 0.96100 0.97907 0.89909 1.17097 0.97202 0.93869 0.92770 1.21794 0.96217 0.95346 0.91179 1.21234 0.96157 0.94541 1.01454 1.21270 0.94350 0.98333 0.92204 1.20889 0.98111 0.97798 0.96098 1.43531 1.00400 1.00389 1.00746 1.94539 1.57359 1.28013 1.57263 1.94586 1.64079 1.76697 1.01811 1.20973 0.92239 0.90196 1.01229 1.74881 1.15349 1.04787 1.12746 1.85273 1.38979 1.34289 1.38936 0.92936 0.96558 0.94397 0.92232 0.92259 0.84579 0.83501 0.82371 0.82410 0.82304 0.82142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.53 -14.13 9.11 -34.44 -0.31 -14.45 16 8 H 0.05 1.37 7.74 -52.48 -0.41 0.97 16 9 C 0.03 0.77 4.86 -27.88 -0.14 0.63 16 10 C -0.10 -1.85 4.78 -26.73 -0.13 -1.98 16 11 C 0.18 2.59 3.29 -68.86 -0.23 2.37 16 12 H 0.13 1.78 8.14 -51.93 -0.42 1.36 16 13 N -0.81 -10.33 8.67 -5.65 -0.05 -10.38 16 14 C 0.17 2.35 7.29 -12.98 -0.09 2.26 16 15 N -0.48 -6.46 11.26 -9.88 -0.11 -6.57 16 16 C 0.20 2.54 7.80 -156.13 -1.22 1.32 16 17 C -0.01 -0.07 5.88 -104.89 -0.62 -0.69 16 18 C -0.03 -0.19 9.70 -39.26 -0.38 -0.57 16 19 C -0.12 -0.61 10.03 -39.63 -0.40 -1.00 16 20 C -0.04 -0.28 9.55 -39.52 -0.38 -0.65 16 21 C -0.05 -0.44 6.85 -80.00 -0.55 -0.99 16 22 N 0.03 0.33 4.45 33.94 0.15 0.48 16 23 O -0.16 -1.80 18.44 -29.46 -0.54 -2.35 16 24 O -0.16 -2.00 18.44 -29.46 -0.54 -2.55 16 25 C -0.03 -0.26 9.20 -39.26 -0.36 -0.62 16 26 N -0.37 -5.19 11.86 30.96 0.37 -4.82 16 27 O 0.09 1.19 11.27 18.05 0.20 1.39 16 28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.04 0.95 7.75 -51.93 -0.40 0.55 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.34 3.46 9.06 -39.29 -0.36 3.11 16 34 H 0.35 4.12 8.97 -39.30 -0.35 3.77 16 35 H 0.16 1.08 7.88 -52.48 -0.41 0.67 16 36 H 0.16 0.31 8.06 -52.49 -0.42 -0.11 16 37 H 0.16 0.73 7.60 -52.49 -0.40 0.34 16 38 H 0.16 1.72 7.42 -52.48 -0.39 1.33 16 LS Contribution 347.70 15.07 5.24 5.24 Total: -1.00 -31.41 347.70 -8.43 -39.84 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -3.97 Total: 1.59 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -4.89 Total: -12.83 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: 1.09 Total: -46.41 kcal Atomic # 8 Polarization: -2.62 SS G_CDS: -0.88 Total: -3.50 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.41 -8.43 -39.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818377725.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.897 kcal (2) G-P(sol) polarization free energy of solvation -31.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds