Wall clock time and date at job start Tue Mar 31 2020 12:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48505 * 109.47183 * 239.99617 * 3 2 1 5 5 H 1.48496 * 109.47425 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47216 * 119.99610 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46626 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47016 * 55.00506 * 11 10 9 13 13 N 1.46897 * 109.47488 * 294.99728 * 11 10 9 14 14 C 1.50707 * 109.46980 * 175.00014 * 11 10 9 15 15 N 1.30981 * 126.43911 * 254.71857 * 14 11 10 16 16 C 1.35213 * 105.57499 * 179.89499 * 15 14 11 17 17 C 1.48428 * 126.41094 * 180.13438 * 16 15 14 18 18 C 1.39346 * 120.11904 * 0.30472 * 17 16 15 19 19 C 1.38000 * 119.88030 * 179.97438 * 18 17 16 20 20 C 1.38346 * 120.11956 * 359.97438 * 19 18 17 21 21 C 1.38301 * 120.23844 * 0.02562 * 20 19 18 22 22 N 1.48018 * 119.93580 * 180.02562 * 21 20 19 23 23 O 1.21798 * 120.00254 * 0.02562 * 22 21 20 24 24 O 1.21800 * 119.99782 * 180.02562 * 22 21 20 25 25 C 1.38041 * 120.12083 * 359.74459 * 21 20 19 26 26 N 1.30752 * 107.17752 * 0.36731 * 16 15 14 27 27 O 1.21294 * 110.09708 * 359.76502 * 26 16 15 28 28 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 30 30 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 31 31 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 32 32 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 33 33 H 1.00902 * 110.99565 * 176.04500 * 13 11 10 34 34 H 1.00888 * 111.00369 * 300.00452 * 13 11 10 35 35 H 1.08003 * 120.05928 * 359.97438 * 18 17 16 36 36 H 1.07996 * 119.94212 * 180.02562 * 19 18 17 37 37 H 1.07992 * 119.87682 * 180.02562 * 20 19 18 38 38 H 1.08005 * 120.06067 * 180.27241 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9870 0.0012 12 1 0.7881 -5.0072 -0.8405 13 7 0.7291 -5.1182 1.2567 14 6 2.4550 -6.1299 -0.1227 15 7 2.6703 -6.8565 -1.1910 16 6 3.6206 -7.7506 -0.8365 17 6 4.2116 -8.7991 -1.7050 18 6 3.7960 -8.9266 -3.0289 19 6 4.3491 -9.9029 -3.8322 20 6 5.3151 -10.7538 -3.3255 21 6 5.7313 -10.6317 -2.0123 22 7 6.7657 -11.5453 -1.4772 23 8 7.2498 -12.4033 -2.1934 24 8 7.1327 -11.4391 -0.3207 25 6 5.1880 -9.6556 -1.2013 26 7 3.9179 -7.5219 0.4161 27 8 3.2581 -6.5961 0.8388 28 1 -0.4850 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6241 -2.5568 0.8903 31 1 2.8721 -3.6042 -0.8894 32 1 2.8721 -3.6043 0.8905 33 1 0.1648 -5.9546 1.2546 34 1 1.3491 -5.1022 2.0524 35 1 3.0422 -8.2625 -3.4256 36 1 4.0280 -10.0023 -4.8585 37 1 5.7457 -11.5161 -3.9577 38 1 5.5170 -9.5582 -0.1772 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818377725.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:48 Heat of formation + Delta-G solvation = 63.095548 kcal Electronic energy + Delta-G solvation = -24783.549190 eV Core-core repulsion = 20824.566150 eV Total energy + Delta-G solvation = -3958.983041 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.84480 -43.40322 -40.68212 -38.18740 -37.82314 -37.07511 -35.15300 -33.80707 -33.23635 -32.17767 -31.81606 -28.29848 -27.80949 -26.26500 -25.86870 -24.38645 -23.39225 -22.74771 -21.68686 -20.41946 -19.83597 -19.34298 -18.75507 -18.75262 -18.25737 -17.72926 -17.29932 -16.92669 -16.44708 -16.41490 -15.86528 -15.51032 -15.16681 -14.77153 -14.29051 -14.18574 -13.88670 -13.48763 -13.43320 -13.21573 -13.05489 -12.81355 -12.78733 -12.56656 -12.52874 -12.44885 -12.42453 -12.31341 -11.85575 -11.66945 -11.34164 -11.08107 -10.79724 -10.47890 -10.32381 -10.02429 -8.12699 -6.21862 -1.41560 -0.79126 -0.01526 0.11837 0.16374 1.04198 1.43843 1.45146 1.51492 1.53407 2.03914 2.15542 2.45366 2.59375 3.20979 3.21908 3.25733 3.49366 3.51581 3.72769 3.78277 3.86129 3.98719 4.19502 4.29467 4.37862 4.51351 4.55812 4.79382 4.79889 4.89011 4.93385 4.99508 5.22922 5.26487 5.59311 5.84852 5.98158 6.00562 6.31451 6.32810 6.45433 6.80696 6.96377 7.45972 8.98082 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.023887 B = 0.002189 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.905239 B =12790.197890 C =12892.873235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.004 3.996 3 Si 0.955 3.045 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.544 4.544 8 H 0.055 0.945 9 C 0.040 3.960 10 C -0.091 4.091 11 C 0.200 3.800 12 H 0.131 0.869 13 N -0.819 5.819 14 C 0.175 3.825 15 N -0.478 5.478 16 C 0.199 3.801 17 C -0.030 4.030 18 C -0.018 4.018 19 C -0.092 4.092 20 C -0.026 4.026 21 C -0.060 4.060 22 N 0.030 4.970 23 O -0.138 6.138 24 O -0.209 6.209 25 C -0.033 4.033 26 N -0.392 5.392 27 O 0.082 5.918 28 H 0.262 0.738 29 H -0.006 1.006 30 H 0.018 0.982 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.358 0.642 34 H 0.356 0.644 35 H 0.169 0.831 36 H 0.205 0.795 37 H 0.187 0.813 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.322 -22.622 -8.265 24.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.780 3.220 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.582 4.582 8 H 0.073 0.927 9 C 0.002 3.998 10 C -0.130 4.130 11 C 0.085 3.915 12 H 0.149 0.851 13 N -0.350 5.350 14 C -0.048 4.048 15 N -0.211 5.211 16 C -0.071 4.071 17 C -0.033 4.033 18 C -0.037 4.037 19 C -0.110 4.110 20 C -0.046 4.046 21 C -0.143 4.143 22 N 0.547 4.453 23 O -0.362 6.362 24 O -0.413 6.413 25 C -0.054 4.054 26 N -0.099 5.099 27 O 0.023 5.977 28 H 0.071 0.929 29 H 0.013 0.987 30 H 0.036 0.964 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.173 0.827 34 H 0.171 0.829 35 H 0.187 0.813 36 H 0.222 0.778 37 H 0.204 0.796 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.834 -21.925 -8.550 24.245 hybrid contribution 1.157 0.112 0.875 1.455 sum 6.991 -21.812 -7.675 24.157 Atomic orbital electron populations 1.70075 1.07440 1.27547 1.51647 1.25830 0.95678 1.02786 0.95111 0.85661 0.78385 0.79000 0.78934 1.19534 1.21031 1.19504 1.21682 0.93340 0.92746 1.50405 0.92724 1.18820 0.93791 0.90777 0.96367 1.21571 0.98216 0.91771 1.01413 1.20545 0.88902 0.85565 0.96496 0.85132 1.58758 1.27196 1.46306 1.02724 1.31088 0.93652 0.98018 0.82070 1.71984 1.15847 1.06778 1.26536 1.24022 0.95400 0.97903 0.89816 1.17193 0.98264 0.94007 0.93846 1.22056 0.95944 0.95773 0.89965 1.21717 0.94185 0.92251 1.02822 1.21730 0.93588 0.98483 0.90764 1.21021 0.98216 0.97739 0.97286 1.43826 1.00571 1.00464 1.00479 1.94494 1.57011 1.27886 1.56841 1.94598 1.65931 1.78017 1.02782 1.20819 0.92797 0.90950 1.00845 1.74884 1.16054 1.05345 1.13619 1.85260 1.39054 1.34421 1.38989 0.92927 0.98713 0.96363 0.92389 0.92061 0.82730 0.82851 0.81335 0.77838 0.79600 0.83882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.50 13.29 21.45 0.28 -54.22 16 2 C 0.00 0.23 5.46 84.65 0.46 0.69 16 3 Si 0.95 43.21 29.54 68.60 2.03 45.24 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.54 -29.46 9.11 25.60 0.23 -29.23 16 8 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 9 C 0.04 1.91 4.86 29.85 0.15 2.05 16 10 C -0.09 -3.27 4.78 30.60 0.15 -3.13 16 11 C 0.20 5.57 3.29 44.17 0.15 5.71 16 12 H 0.13 3.58 8.14 -2.39 -0.02 3.56 16 13 N -0.82 -20.52 8.67 -171.80 -1.49 -22.01 16 14 C 0.18 4.64 7.29 88.36 0.64 5.29 16 15 N -0.48 -12.52 11.26 -302.53 -3.41 -15.93 16 16 C 0.20 5.07 7.80 137.30 1.07 6.14 16 17 C -0.03 -0.60 5.88 -20.04 -0.12 -0.71 16 18 C -0.02 -0.21 9.70 22.48 0.22 0.01 16 19 C -0.09 -0.53 10.03 22.24 0.22 -0.31 16 20 C -0.03 -0.25 9.55 22.31 0.21 -0.03 16 21 C -0.06 -1.05 6.85 36.34 0.25 -0.80 16 22 N 0.03 0.69 4.45 -46.54 -0.21 0.48 16 23 O -0.14 -3.01 18.44 18.89 0.35 -2.66 16 24 O -0.21 -5.69 18.44 18.89 0.35 -5.34 16 25 C -0.03 -0.67 9.20 22.48 0.21 -0.46 16 26 N -0.39 -11.03 11.86 -59.16 -0.70 -11.73 16 27 O 0.08 2.24 11.27 74.65 0.84 3.08 16 28 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 29 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 30 H 0.02 0.93 7.75 -2.39 -0.02 0.91 16 31 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.36 6.96 9.06 -89.69 -0.81 6.15 16 34 H 0.36 8.26 8.97 -89.70 -0.80 7.45 16 35 H 0.17 1.73 7.88 -2.91 -0.02 1.70 16 36 H 0.20 -0.58 8.06 -2.91 -0.02 -0.60 16 37 H 0.19 0.80 7.60 -2.91 -0.02 0.78 16 38 H 0.14 3.32 7.42 -2.91 -0.02 3.30 16 Total: -1.00 -69.64 347.70 1.41 -68.23 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -0.48 Total: 9.66 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: 3.84 Total: -14.79 kcal Atomic # 7 Polarization: -97.90 SS G_CDS: -5.52 Total: -103.42 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: 1.54 Total: -4.92 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -69.64 1.41 -68.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818377725.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.330 kcal (2) G-P(sol) polarization free energy of solvation -69.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds