Wall clock time and date at job start Tue Mar 31 2020 12:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99428 * 2 1 4 4 H 1.48492 * 109.47351 * 270.00044 * 3 2 1 5 5 H 1.48496 * 109.47287 * 30.00263 * 3 2 1 6 6 H 1.48503 * 109.47013 * 150.00056 * 3 2 1 7 7 C 1.37869 * 120.00801 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99819 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00457 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47180 * 179.97438 * 9 7 2 11 11 C 1.52991 * 109.46894 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47660 * 55.00283 * 11 10 9 13 13 N 1.46901 * 109.47418 * 294.99764 * 11 10 9 14 14 C 1.50704 * 109.47044 * 175.00338 * 11 10 9 15 15 N 1.30980 * 126.43348 * 255.31596 * 14 11 10 16 16 C 1.35222 * 105.57522 * 180.15834 * 15 14 11 17 17 C 1.48417 * 126.41187 * 179.84372 * 16 15 14 18 18 C 1.39327 * 120.12175 * 179.71775 * 17 16 15 19 19 C 1.38022 * 119.88384 * 180.02562 * 18 17 16 20 20 C 1.38316 * 120.11627 * 0.27937 * 19 18 17 21 21 N 1.48029 * 119.87741 * 179.71778 * 20 19 18 22 22 O 1.21799 * 119.99844 * 0.02562 * 21 20 19 23 23 O 1.21799 * 119.99655 * 179.97438 * 21 20 19 24 24 C 1.38321 * 120.24236 * 359.44563 * 20 19 18 25 25 C 1.38017 * 120.11969 * 0.55008 * 24 20 19 26 26 N 1.30761 * 107.17106 * 359.59035 * 16 15 14 27 27 O 1.21287 * 110.10008 * 0.25901 * 26 16 15 28 28 H 0.96998 * 120.00553 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.46838 * 60.00432 * 9 7 2 30 30 H 1.08993 * 109.47225 * 300.00080 * 9 7 2 31 31 H 1.09001 * 109.46725 * 59.99982 * 10 9 7 32 32 H 1.09007 * 109.46641 * 300.00079 * 10 9 7 33 33 H 1.00896 * 110.99889 * 300.00834 * 13 11 10 34 34 H 1.00902 * 110.99798 * 63.94978 * 13 11 10 35 35 H 1.08008 * 120.05482 * 0.04596 * 18 17 16 36 36 H 1.08002 * 119.93878 * 179.97438 * 19 18 17 37 37 H 1.08001 * 119.94289 * 180.25723 * 24 20 19 38 38 H 1.08003 * 120.06379 * 179.74404 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5465 1.4404 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1938 -0.0011 10 6 4.0218 -2.6363 -0.0010 11 6 5.5517 -2.6361 -0.0009 12 1 5.9150 -2.0467 0.8408 13 7 6.0414 -2.0509 -1.2562 14 6 6.0541 -4.0515 0.1229 15 7 6.5653 -4.6045 1.1946 16 6 6.8749 -5.8713 0.8370 17 6 7.4872 -6.9073 1.7057 18 6 7.7463 -8.1796 1.2004 19 6 8.3154 -9.1394 2.0128 20 6 8.6231 -8.8418 3.3280 21 7 9.2275 -9.8771 4.1964 22 8 9.4535 -10.9884 3.7522 23 8 9.4997 -9.6172 5.3548 24 6 8.3732 -7.5786 3.8333 25 6 7.8045 -6.6113 3.0298 26 7 6.5287 -6.0144 -0.4158 27 8 6.0569 -4.9801 -0.8385 28 1 -0.4851 0.8400 0.0004 29 1 3.8752 -0.6802 0.8889 30 1 3.8746 -0.6798 -0.8911 31 1 3.6581 -3.1503 -0.8907 32 1 3.6587 -3.1499 0.8893 33 1 5.7179 -2.5799 -2.0522 34 1 5.7718 -1.0816 -1.3326 35 1 7.5026 -8.4142 0.1747 36 1 8.5163 -10.1260 1.6221 37 1 8.6191 -7.3503 4.8598 38 1 7.6059 -5.6266 3.4264 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818380380.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:44 Heat of formation + Delta-G solvation = 85.155405 kcal Electronic energy + Delta-G solvation = -24666.560519 eV Core-core repulsion = 20708.534065 eV Total energy + Delta-G solvation = -3958.026454 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.82231 -42.55092 -39.98051 -37.21235 -36.93254 -36.12424 -33.51259 -32.86963 -32.07621 -31.47085 -30.58876 -27.43357 -27.18794 -24.78543 -24.40208 -23.48893 -22.74082 -21.33895 -20.37179 -19.81326 -19.00203 -18.30349 -18.12302 -17.89486 -17.01802 -16.64980 -16.43749 -15.67679 -15.34699 -14.76405 -14.42514 -14.37026 -14.04179 -13.89754 -13.65392 -13.46360 -12.90541 -12.77875 -12.28986 -12.19874 -12.15734 -11.92239 -11.57555 -11.52182 -11.49121 -11.32554 -11.14194 -10.84324 -10.31869 -10.19619 -9.99833 -9.99209 -9.63258 -9.44871 -8.84194 -8.71454 -6.21240 -4.22292 -0.81455 0.38354 0.58958 0.96682 1.07215 1.95328 2.55616 2.86496 2.90082 3.16947 3.25646 3.26749 3.45866 3.85891 3.92836 4.24379 4.27139 4.28166 4.58616 4.65191 4.72937 4.97292 5.07913 5.10569 5.12344 5.18234 5.24797 5.38716 5.54238 5.64329 5.67438 5.95043 5.99621 6.06886 6.41887 6.87995 6.89520 7.06075 7.25172 7.29064 7.56098 7.81120 8.32644 8.81711 9.38810 10.91728 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.026625 B = 0.002147 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.387856 B =13038.028643 C =13433.157928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.068 3.932 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.527 4.527 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.136 4.136 11 C 0.176 3.824 12 H 0.127 0.873 13 N -0.840 5.840 14 C 0.228 3.772 15 N -0.474 5.474 16 C 0.188 3.812 17 C 0.045 3.955 18 C -0.087 4.087 19 C -0.054 4.054 20 C -0.036 4.036 21 N 0.027 4.973 22 O -0.158 6.158 23 O -0.156 6.156 24 C -0.054 4.054 25 C -0.077 4.077 26 N -0.366 5.366 27 O 0.094 5.906 28 H 0.265 0.735 29 H 0.022 0.978 30 H 0.014 0.986 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.348 0.652 34 H 0.365 0.635 35 H 0.156 0.844 36 H 0.161 0.839 37 H 0.162 0.838 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.650 -13.167 2.415 22.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.565 4.565 8 H 0.090 0.910 9 C -0.046 4.046 10 C -0.176 4.176 11 C 0.062 3.938 12 H 0.144 0.856 13 N -0.374 5.374 14 C 0.007 3.993 15 N -0.207 5.207 16 C -0.081 4.081 17 C 0.043 3.957 18 C -0.107 4.107 19 C -0.073 4.073 20 C -0.119 4.119 21 N 0.547 4.453 22 O -0.374 6.374 23 O -0.372 6.372 24 C -0.073 4.073 25 C -0.097 4.097 26 N -0.071 5.071 27 O 0.031 5.969 28 H 0.075 0.925 29 H 0.040 0.960 30 H 0.032 0.968 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.161 0.839 34 H 0.182 0.818 35 H 0.174 0.826 36 H 0.179 0.821 37 H 0.180 0.820 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 18.164 -13.455 2.249 22.716 hybrid contribution -0.704 0.893 -0.085 1.140 sum 17.460 -12.562 2.164 21.618 Atomic orbital electron populations 1.69897 1.06367 1.27173 1.50140 1.25040 0.94777 0.99272 0.94298 0.86776 0.80368 0.83529 0.78589 1.20150 1.21235 1.18889 1.20995 0.88957 0.94637 1.51935 0.90996 1.19567 0.97891 0.90546 0.96620 1.22381 0.90024 1.02072 1.03125 1.20344 0.95317 0.81671 0.96458 0.85565 1.58974 1.66553 1.08804 1.03035 1.29026 0.92716 0.96089 0.81438 1.71968 1.17462 1.04796 1.26471 1.23619 1.02404 0.92129 0.89982 1.17728 0.95385 0.90478 0.92110 1.21231 0.97495 0.90786 1.01235 1.20960 0.94548 1.01505 0.90257 1.21301 1.08293 0.89994 0.92356 1.43609 0.98572 1.01729 1.01344 1.94551 1.56614 1.08026 1.78211 1.94557 1.54963 1.86296 1.01417 1.21035 0.94655 0.89536 1.02043 1.21316 0.96189 1.00651 0.91527 1.74867 1.14450 1.05208 1.12596 1.85278 1.57687 1.15230 1.38689 0.92489 0.95960 0.96797 0.91438 0.91225 0.83934 0.81806 0.82649 0.82126 0.82012 0.81991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.28 13.96 55.43 0.77 -25.50 16 2 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 3 Si 0.88 19.87 27.47 -169.99 -4.67 15.20 16 4 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.26 -5.59 6.54 56.52 0.37 -5.22 16 7 C -0.53 -13.72 9.66 -34.44 -0.33 -14.05 16 8 H 0.07 2.05 7.99 -52.48 -0.42 1.63 16 9 C -0.01 -0.18 3.81 -27.88 -0.11 -0.28 16 10 C -0.14 -2.20 4.78 -26.73 -0.13 -2.33 16 11 C 0.18 2.29 3.35 -68.87 -0.23 2.06 16 12 H 0.13 1.60 8.14 -51.93 -0.42 1.18 16 13 N -0.84 -9.78 9.17 -5.66 -0.05 -9.83 16 14 C 0.23 3.05 7.30 -12.99 -0.09 2.95 16 15 N -0.47 -6.38 11.26 -9.88 -0.11 -6.49 16 16 C 0.19 2.35 7.80 -156.12 -1.22 1.14 16 17 C 0.04 0.44 5.88 -104.89 -0.62 -0.17 16 18 C -0.09 -0.70 9.69 -39.26 -0.38 -1.08 16 19 C -0.05 -0.41 9.54 -39.63 -0.38 -0.78 16 20 C -0.04 -0.32 6.85 -79.88 -0.55 -0.87 16 21 N 0.03 0.30 4.45 33.99 0.15 0.45 16 22 O -0.16 -1.81 18.44 -29.46 -0.54 -2.36 16 23 O -0.16 -1.80 18.44 -29.46 -0.54 -2.35 16 24 C -0.05 -0.42 9.54 -39.63 -0.38 -0.79 16 25 C -0.08 -0.64 9.70 -39.26 -0.38 -1.02 16 26 N -0.37 -4.82 11.86 30.97 0.37 -4.46 16 27 O 0.09 1.25 11.27 18.05 0.20 1.46 16 28 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 30 H 0.01 0.26 6.30 -51.93 -0.33 -0.07 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.35 3.72 8.97 -39.29 -0.35 3.37 16 34 H 0.36 4.15 7.55 -39.29 -0.30 3.86 16 35 H 0.16 1.10 7.87 -52.48 -0.41 0.69 16 36 H 0.16 0.93 7.60 -52.49 -0.40 0.53 16 37 H 0.16 0.98 7.60 -52.49 -0.40 0.58 16 38 H 0.16 1.24 7.88 -52.48 -0.41 0.83 16 LS Contribution 342.13 15.07 5.16 5.16 Total: -1.00 -30.24 342.13 -7.98 -38.22 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -3.83 Total: 3.97 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -4.89 Total: -13.47 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: 1.13 Total: -45.83 kcal Atomic # 8 Polarization: -2.36 SS G_CDS: -0.88 Total: -3.25 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.67 Total: 15.20 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.24 -7.98 -38.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818380380.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.375 kcal (2) G-P(sol) polarization free energy of solvation -30.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds