Wall clock time and date at job start Tue Mar 31 2020 12:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99428 * 2 1 4 4 H 1.48492 * 109.47351 * 270.00044 * 3 2 1 5 5 H 1.48496 * 109.47287 * 30.00263 * 3 2 1 6 6 H 1.48503 * 109.47013 * 150.00056 * 3 2 1 7 7 C 1.37869 * 120.00801 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99819 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00457 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47180 * 179.97438 * 9 7 2 11 11 C 1.52991 * 109.46894 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47660 * 55.00283 * 11 10 9 13 13 N 1.46901 * 109.47418 * 294.99764 * 11 10 9 14 14 C 1.50704 * 109.47044 * 175.00338 * 11 10 9 15 15 N 1.30980 * 126.43348 * 255.31596 * 14 11 10 16 16 C 1.35222 * 105.57522 * 180.15834 * 15 14 11 17 17 C 1.48417 * 126.41187 * 179.84372 * 16 15 14 18 18 C 1.39327 * 120.12175 * 179.71775 * 17 16 15 19 19 C 1.38022 * 119.88384 * 180.02562 * 18 17 16 20 20 C 1.38316 * 120.11627 * 0.27937 * 19 18 17 21 21 N 1.48029 * 119.87741 * 179.71778 * 20 19 18 22 22 O 1.21799 * 119.99844 * 0.02562 * 21 20 19 23 23 O 1.21799 * 119.99655 * 179.97438 * 21 20 19 24 24 C 1.38321 * 120.24236 * 359.44563 * 20 19 18 25 25 C 1.38017 * 120.11969 * 0.55008 * 24 20 19 26 26 N 1.30761 * 107.17106 * 359.59035 * 16 15 14 27 27 O 1.21287 * 110.10008 * 0.25901 * 26 16 15 28 28 H 0.96998 * 120.00553 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.46838 * 60.00432 * 9 7 2 30 30 H 1.08993 * 109.47225 * 300.00080 * 9 7 2 31 31 H 1.09001 * 109.46725 * 59.99982 * 10 9 7 32 32 H 1.09007 * 109.46641 * 300.00079 * 10 9 7 33 33 H 1.00896 * 110.99889 * 300.00834 * 13 11 10 34 34 H 1.00902 * 110.99798 * 63.94978 * 13 11 10 35 35 H 1.08008 * 120.05482 * 0.04596 * 18 17 16 36 36 H 1.08002 * 119.93878 * 179.97438 * 19 18 17 37 37 H 1.08001 * 119.94289 * 180.25723 * 24 20 19 38 38 H 1.08003 * 120.06379 * 179.74404 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5465 1.4404 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1938 -0.0011 10 6 4.0218 -2.6363 -0.0010 11 6 5.5517 -2.6361 -0.0009 12 1 5.9150 -2.0467 0.8408 13 7 6.0414 -2.0509 -1.2562 14 6 6.0541 -4.0515 0.1229 15 7 6.5653 -4.6045 1.1946 16 6 6.8749 -5.8713 0.8370 17 6 7.4872 -6.9073 1.7057 18 6 7.7463 -8.1796 1.2004 19 6 8.3154 -9.1394 2.0128 20 6 8.6231 -8.8418 3.3280 21 7 9.2275 -9.8771 4.1964 22 8 9.4535 -10.9884 3.7522 23 8 9.4997 -9.6172 5.3548 24 6 8.3732 -7.5786 3.8333 25 6 7.8045 -6.6113 3.0298 26 7 6.5287 -6.0144 -0.4158 27 8 6.0569 -4.9801 -0.8385 28 1 -0.4851 0.8400 0.0004 29 1 3.8752 -0.6802 0.8889 30 1 3.8746 -0.6798 -0.8911 31 1 3.6581 -3.1503 -0.8907 32 1 3.6587 -3.1499 0.8893 33 1 5.7179 -2.5799 -2.0522 34 1 5.7718 -1.0816 -1.3326 35 1 7.5026 -8.4142 0.1747 36 1 8.5163 -10.1260 1.6221 37 1 8.6191 -7.3503 4.8598 38 1 7.6059 -5.6266 3.4264 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818380380.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:44 Heat of formation + Delta-G solvation = 64.830934 kcal Electronic energy + Delta-G solvation = -24667.441854 eV Core-core repulsion = 20708.534065 eV Total energy + Delta-G solvation = -3958.907789 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.81443 -43.34961 -40.67393 -38.38147 -37.76847 -37.09446 -35.11006 -34.03788 -32.74920 -32.50258 -31.97973 -28.54160 -28.24873 -26.04107 -25.38902 -24.34573 -23.61628 -22.56414 -21.61791 -20.54872 -19.81330 -19.33575 -19.25298 -18.71157 -18.69273 -17.55273 -17.48716 -16.40589 -16.25610 -15.99621 -15.84754 -15.22421 -15.02623 -14.80611 -14.73805 -14.60358 -14.35633 -13.93895 -13.52849 -13.21973 -13.05062 -12.88676 -12.74601 -12.68463 -12.40492 -12.36220 -12.33330 -12.05789 -11.91502 -11.65243 -11.58756 -11.38995 -10.75269 -10.60807 -10.45649 -9.86304 -8.27821 -6.33936 -1.59329 -0.29738 -0.22776 0.12611 0.21367 1.05012 1.41190 1.44095 1.54133 1.54727 2.02351 2.15525 2.38596 2.54033 3.08300 3.20264 3.32281 3.42404 3.59528 3.64246 3.81654 3.92099 4.06270 4.14443 4.20260 4.43192 4.51333 4.54634 4.61698 4.64676 4.76374 4.89622 4.92280 4.96845 5.24554 5.36339 5.47536 5.63979 5.93851 6.25828 6.38147 6.41421 6.75324 6.81346 7.31114 8.88850 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.026625 B = 0.002147 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.387856 B =13038.028643 C =13433.157928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.954 3.046 4 H -0.263 1.263 5 H -0.294 1.294 6 H -0.233 1.233 7 C -0.534 4.534 8 H 0.026 0.974 9 C -0.006 4.006 10 C -0.126 4.126 11 C 0.192 3.808 12 H 0.137 0.863 13 N -0.834 5.834 14 C 0.224 3.776 15 N -0.483 5.483 16 C 0.190 3.810 17 C 0.027 3.973 18 C -0.080 4.080 19 C -0.045 4.045 20 C -0.043 4.043 21 N 0.028 4.972 22 O -0.170 6.170 23 O -0.171 6.171 24 C -0.046 4.046 25 C -0.072 4.072 26 N -0.377 5.377 27 O 0.088 5.912 28 H 0.265 0.735 29 H 0.031 0.969 30 H 0.037 0.963 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.354 0.646 34 H 0.369 0.631 35 H 0.166 0.834 36 H 0.180 0.820 37 H 0.179 0.821 38 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.103 -12.568 2.362 23.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.197 4.197 3 Si 0.776 3.224 4 H -0.188 1.188 5 H -0.220 1.220 6 H -0.156 1.156 7 C -0.572 4.572 8 H 0.044 0.956 9 C -0.044 4.044 10 C -0.167 4.167 11 C 0.077 3.923 12 H 0.155 0.845 13 N -0.368 5.368 14 C 0.003 3.997 15 N -0.216 5.216 16 C -0.079 4.079 17 C 0.025 3.975 18 C -0.101 4.101 19 C -0.064 4.064 20 C -0.127 4.127 21 N 0.545 4.455 22 O -0.385 6.385 23 O -0.386 6.386 24 C -0.065 4.065 25 C -0.092 4.092 26 N -0.083 5.083 27 O 0.027 5.973 28 H 0.074 0.926 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.168 0.832 34 H 0.187 0.813 35 H 0.183 0.817 36 H 0.197 0.803 37 H 0.196 0.804 38 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 20.647 -12.876 2.189 24.432 hybrid contribution -1.518 0.579 -0.070 1.626 sum 19.130 -12.298 2.119 22.840 Atomic orbital electron populations 1.70084 1.08682 1.28227 1.52509 1.26114 0.95614 1.03943 0.94035 0.85613 0.79818 0.77539 0.79407 1.18799 1.22043 1.15605 1.21426 0.92287 0.92834 1.50687 0.95599 1.19503 0.93738 0.93301 0.97838 1.22184 0.92695 0.99488 1.02321 1.20084 0.92609 0.81935 0.97625 0.84522 1.58977 1.66085 1.09090 1.02667 1.29010 0.92968 0.96129 0.81602 1.71961 1.17730 1.05341 1.26530 1.24029 1.01639 0.92264 0.90005 1.17888 0.96460 0.90631 0.92508 1.21311 0.96933 0.90109 1.01701 1.21139 0.93502 1.02146 0.89585 1.21466 1.08755 0.89868 0.92605 1.43847 0.98298 1.01928 1.01386 1.94542 1.57027 1.08714 1.78195 1.94550 1.55571 1.86395 1.02049 1.21189 0.93741 0.88827 1.02707 1.21367 0.95819 1.01038 0.90976 1.74850 1.15188 1.05201 1.13068 1.85264 1.57931 1.15322 1.38792 0.92606 0.95059 0.94494 0.91884 0.92669 0.83230 0.81292 0.81656 0.80305 0.80359 0.81320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.65 13.96 21.44 0.30 -57.35 16 2 C 0.00 -0.03 5.47 84.65 0.46 0.44 16 3 Si 0.95 40.05 27.47 68.60 1.88 41.93 16 4 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 5 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.23 -8.56 6.54 99.48 0.65 -7.91 16 7 C -0.53 -28.21 9.66 25.60 0.25 -27.96 16 8 H 0.03 1.55 7.99 -2.90 -0.02 1.52 16 9 C -0.01 -0.24 3.81 29.85 0.11 -0.13 16 10 C -0.13 -3.97 4.78 30.59 0.15 -3.82 16 11 C 0.19 4.59 3.35 44.17 0.15 4.73 16 12 H 0.14 3.06 8.14 -2.39 -0.02 3.04 16 13 N -0.83 -17.17 9.17 -171.81 -1.58 -18.74 16 14 C 0.22 5.64 7.30 88.36 0.64 6.28 16 15 N -0.48 -12.25 11.26 -302.51 -3.41 -15.65 16 16 C 0.19 4.49 7.80 137.29 1.07 5.56 16 17 C 0.03 0.49 5.88 -20.04 -0.12 0.37 16 18 C -0.08 -1.14 9.69 22.48 0.22 -0.92 16 19 C -0.04 -0.59 9.54 22.24 0.21 -0.37 16 20 C -0.04 -0.69 6.85 36.41 0.25 -0.44 16 21 N 0.03 0.58 4.45 -46.36 -0.21 0.37 16 22 O -0.17 -3.72 18.44 18.89 0.35 -3.37 16 23 O -0.17 -3.79 18.44 18.89 0.35 -3.44 16 24 C -0.05 -0.62 9.54 22.24 0.21 -0.41 16 25 C -0.07 -1.06 9.70 22.48 0.22 -0.85 16 26 N -0.38 -9.46 11.86 -59.14 -0.70 -10.16 16 27 O 0.09 2.23 11.27 74.65 0.84 3.08 16 28 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 29 H 0.03 1.16 7.20 -2.39 -0.02 1.15 16 30 H 0.04 1.27 6.30 -2.39 -0.02 1.26 16 31 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.35 6.75 8.97 -89.70 -0.80 5.95 16 34 H 0.37 7.15 7.55 -89.69 -0.68 6.47 16 35 H 0.17 2.01 7.87 -2.91 -0.02 1.99 16 36 H 0.18 1.65 7.60 -2.91 -0.02 1.63 16 37 H 0.18 1.78 7.60 -2.91 -0.02 1.76 16 38 H 0.17 2.27 7.88 -2.91 -0.02 2.24 16 Total: -1.00 -66.68 342.13 1.27 -65.41 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -0.39 Total: 15.45 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: 3.83 Total: -17.53 kcal Atomic # 7 Polarization: -95.94 SS G_CDS: -5.59 Total: -101.54 kcal Atomic # 8 Polarization: -5.27 SS G_CDS: 1.54 Total: -3.73 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 1.88 Total: 41.93 kcal Total: -66.68 1.27 -65.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818380380.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.242 kcal (2) G-P(sol) polarization free energy of solvation -66.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds