Wall clock time and date at job start Tue Mar 31 2020 12:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47249 * 2 1 4 4 O 1.42892 * 109.47355 * 120.00359 * 2 1 3 5 5 C 1.35874 * 117.00331 * 181.56130 * 4 2 1 6 6 C 1.38830 * 119.93966 * 174.32270 * 5 4 2 7 7 C 1.37915 * 120.05861 * 179.97438 * 6 5 4 8 8 C 1.39334 * 119.94152 * 0.02562 * 7 6 5 9 9 C 1.48433 * 120.06156 * 179.97438 * 8 7 6 10 10 N 1.34054 * 126.67664 * 0.02562 * 9 8 7 11 11 N 1.28984 * 107.26856 * 179.97438 * 10 9 8 12 12 N 1.28727 * 108.94714 * 359.97438 * 11 10 9 13 13 H 0.97002 * 125.34132 * 179.97438 * 12 11 10 14 14 N 1.28873 * 109.31934 * 0.02562 * 12 11 10 15 15 C 1.39346 * 119.87729 * 0.25314 * 8 7 6 16 16 C 1.37911 * 119.93452 * 359.51359 * 15 8 7 17 17 C 1.50704 * 109.46914 * 240.00622 * 2 1 3 18 18 O 1.21215 * 119.99739 * 239.99681 * 17 2 1 19 19 O 1.34309 * 120.00420 * 59.99980 * 17 2 1 20 20 C 1.34915 * 117.00129 * 180.02562 * 19 17 2 21 21 H 1.07999 * 120.00208 * 359.97438 * 20 19 17 22 22 C 1.38762 * 119.99885 * 180.02562 * 20 19 17 23 23 N 1.31435 * 119.99779 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99766 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47091 * 89.99968 * 24 22 20 26 26 H 1.48500 * 109.47145 * 209.99808 * 24 22 20 27 27 H 1.48504 * 109.47409 * 330.00231 * 24 22 20 28 28 H 1.08999 * 109.47079 * 304.83255 * 1 2 3 29 29 H 1.09008 * 109.46860 * 64.82595 * 1 2 3 30 30 H 1.08994 * 109.47233 * 184.82478 * 1 2 3 31 31 H 1.09012 * 109.46952 * 172.55363 * 3 2 1 32 32 H 1.08998 * 109.47658 * 292.55179 * 3 2 1 33 33 H 1.09000 * 109.46817 * 52.55678 * 3 2 1 34 34 H 1.08000 * 119.96835 * 359.97438 * 6 5 4 35 35 H 1.08000 * 120.02543 * 180.02562 * 7 6 5 36 36 H 1.08003 * 120.02952 * 179.72156 * 15 8 7 37 37 H 1.08008 * 119.97003 * 180.23058 * 16 15 8 38 38 H 0.97002 * 119.99277 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1666 5 6 3.3529 -0.7342 1.3375 6 6 3.8799 -1.2689 2.5053 7 6 5.2463 -1.3320 2.6810 8 6 6.0982 -0.8581 1.6854 9 6 7.5692 -0.9242 1.8720 10 7 8.2200 -1.4106 2.9383 11 7 9.4826 -1.2856 2.7060 12 7 9.6433 -0.7464 1.5482 13 1 10.4983 -0.5438 1.1374 14 7 8.4899 -0.5170 1.0210 15 6 5.5664 -0.3166 0.5167 16 6 4.1993 -0.2604 0.3443 17 6 2.0323 -0.7103 -1.2306 18 8 2.7292 -1.6958 -1.1194 19 8 1.7078 -0.2514 -2.4504 20 6 2.1897 -0.9338 -3.5098 21 1 2.8068 -1.8065 -3.3546 22 6 1.8935 -0.5138 -4.7987 23 7 1.1429 0.5485 -4.9875 24 14 2.5613 -1.4583 -6.2654 25 1 1.5948 -2.5166 -6.6545 26 1 2.7608 -0.5270 -7.4048 27 1 3.8593 -2.0824 -5.9031 28 1 -0.3633 0.5870 0.8435 29 1 -0.3633 0.4372 -0.9301 30 1 -0.3633 -1.0240 0.0864 31 1 3.1219 1.4453 0.1332 32 1 1.7896 1.9165 -0.9490 33 1 1.5720 1.9933 0.8159 34 1 3.2191 -1.6356 3.2768 35 1 5.6557 -1.7484 3.5896 36 1 6.2244 0.0555 -0.2546 37 1 3.7866 0.1558 -0.5630 38 1 0.9355 0.8418 -5.8885 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820001578.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:37 Heat of formation + Delta-G solvation = 50.357170 kcal Electronic energy + Delta-G solvation = -26400.142948 eV Core-core repulsion = 22440.607529 eV Total energy + Delta-G solvation = -3959.535418 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.44426 -40.89377 -38.77440 -37.51178 -35.10574 -34.35701 -33.64496 -32.94630 -32.13967 -30.88365 -29.60063 -27.17622 -25.70453 -24.72026 -24.30872 -23.29819 -22.16491 -21.54079 -19.96596 -19.20708 -17.90097 -17.76857 -17.14114 -16.55103 -16.25035 -15.79353 -15.11688 -15.00208 -14.42665 -14.18999 -14.03950 -13.76785 -13.39324 -13.22013 -12.98057 -12.70912 -12.38716 -12.20981 -12.02579 -11.91376 -11.84983 -11.77428 -11.40905 -11.36052 -11.31918 -11.16317 -10.94893 -10.62206 -10.50390 -10.43251 -10.23247 -9.91713 -9.08727 -8.76838 -8.65436 -7.76162 -6.52166 -4.19729 0.85683 1.23305 1.57934 2.21174 2.46619 2.99815 3.12589 3.18217 3.25723 3.37201 3.75223 3.78627 4.00454 4.22868 4.30402 4.93858 5.00196 5.05219 5.14366 5.18602 5.31306 5.42433 5.49321 5.57975 5.75356 5.80924 5.81857 5.95058 5.99161 6.18204 6.26225 6.29215 6.37306 6.43536 6.57544 6.60408 6.62920 6.86832 7.29240 7.55902 7.83224 8.13736 8.55434 8.96730 9.68386 10.64858 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.013356 B = 0.003880 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.950782 B = 7215.115361 C = 8801.219842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.131 3.869 3 C -0.193 4.193 4 O -0.286 6.286 5 C 0.173 3.827 6 C -0.161 4.161 7 C -0.042 4.042 8 C -0.073 4.073 9 C 0.238 3.762 10 N -0.275 5.275 11 N -0.056 5.056 12 N -0.232 5.232 13 H 0.473 0.527 14 N -0.300 5.300 15 C -0.042 4.042 16 C -0.180 4.180 17 C 0.368 3.632 18 O -0.535 6.535 19 O -0.203 6.203 20 C -0.383 4.383 21 H 0.097 0.903 22 C 0.046 3.954 23 N -0.861 5.861 24 Si 0.942 3.058 25 H -0.272 1.272 26 H -0.277 1.277 27 H -0.266 1.266 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.132 0.868 37 H 0.144 0.856 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.228 2.207 11.772 14.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.091 3.909 3 C -0.250 4.250 4 O -0.199 6.199 5 C 0.126 3.874 6 C -0.179 4.179 7 C -0.063 4.063 8 C -0.077 4.077 9 C -0.041 4.041 10 N -0.148 5.148 11 N -0.052 5.052 12 N -0.078 5.078 13 H 0.327 0.673 14 N -0.151 5.151 15 C -0.062 4.062 16 C -0.198 4.198 17 C 0.214 3.786 18 O -0.432 6.432 19 O -0.110 6.110 20 C -0.459 4.459 21 H 0.114 0.886 22 C -0.159 4.159 23 N -0.497 5.497 24 Si 0.766 3.234 25 H -0.198 1.198 26 H -0.202 1.202 27 H -0.190 1.190 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.154 0.846 35 H 0.156 0.844 36 H 0.150 0.850 37 H 0.161 0.839 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.709 1.872 12.043 14.980 hybrid contribution 0.605 -0.259 -1.595 1.726 sum 9.314 1.613 10.448 14.089 Atomic orbital electron populations 1.21786 0.89068 1.03808 1.04212 1.21241 0.96677 0.91388 0.81582 1.22810 1.03380 0.93814 1.04953 1.86151 1.19181 1.72884 1.41711 1.19053 0.82661 0.92414 0.93251 1.20233 0.94648 1.06017 0.97044 1.20798 0.91681 0.95932 0.97839 1.17035 0.84208 1.08790 0.97642 1.23717 0.95973 0.97234 0.87208 1.76047 0.96310 1.19454 1.23009 1.78840 1.13347 1.11871 1.01108 1.47692 1.09275 1.39085 1.11703 0.67296 1.74995 0.91265 1.23522 1.25338 1.20901 0.94669 0.95327 0.95328 1.21597 0.93561 1.04933 0.99726 1.23444 0.82834 0.85734 0.86581 1.90669 1.38379 1.27187 1.86933 1.83860 1.63237 1.51491 1.12412 1.21255 1.31870 1.11102 0.81717 0.88577 1.25316 0.96230 0.96445 0.97895 1.69975 1.34312 1.22604 1.22843 0.85697 0.79496 0.78833 0.79379 1.19779 1.20227 1.19047 0.90919 0.88580 0.91218 0.90177 0.88851 0.90748 0.84626 0.84439 0.85045 0.83885 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 8.80 37.16 0.33 -1.73 16 2 C 0.13 2.39 1.05 -91.77 -0.10 2.29 16 3 C -0.19 -3.02 8.11 37.16 0.30 -2.72 16 4 O -0.29 -5.18 9.62 -39.26 -0.38 -5.56 16 5 C 0.17 3.04 5.56 -39.14 -0.22 2.83 16 6 C -0.16 -2.39 9.97 -39.48 -0.39 -2.78 16 7 C -0.04 -0.60 9.69 -39.29 -0.38 -0.98 16 8 C -0.07 -1.12 5.88 -104.88 -0.62 -1.74 16 9 C 0.24 3.48 7.93 -156.30 -1.24 2.24 16 10 N -0.27 -3.91 12.23 32.15 0.39 -3.52 16 11 N -0.06 -0.68 13.47 60.35 0.81 0.13 16 12 N -0.23 -2.27 7.90 60.35 0.48 -1.79 16 13 H 0.47 2.21 8.96 -340.37 -3.05 -0.84 16 14 N -0.30 -3.92 12.08 32.17 0.39 -3.53 16 15 C -0.04 -0.69 9.69 -39.29 -0.38 -1.07 16 16 C -0.18 -3.28 5.57 -39.48 -0.22 -3.50 16 17 C 0.37 8.68 4.61 36.01 0.17 8.84 16 18 O -0.53 -13.93 13.14 -25.79 -0.34 -14.26 16 19 O -0.20 -5.43 9.32 -20.68 -0.19 -5.62 16 20 C -0.38 -10.84 9.65 30.93 0.30 -10.55 16 21 H 0.10 2.78 6.86 -52.49 -0.36 2.42 16 22 C 0.05 1.24 5.49 -17.53 -0.10 1.14 16 23 N -0.86 -23.96 13.67 55.48 0.76 -23.20 16 24 Si 0.94 20.68 29.55 -169.99 -5.02 15.65 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 26 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 27 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.10 1.56 8.00 -51.92 -0.42 1.15 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.08 1.26 4.67 -51.92 -0.24 1.01 16 32 H 0.09 1.54 7.93 -51.93 -0.41 1.13 16 33 H 0.07 0.94 8.13 -51.93 -0.42 0.52 16 34 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 35 H 0.14 1.65 7.88 -52.49 -0.41 1.24 16 36 H 0.13 2.04 7.88 -52.48 -0.41 1.63 16 37 H 0.14 2.88 3.77 -52.48 -0.20 2.69 16 38 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 331.04 15.07 4.99 4.99 Total: -1.00 -33.79 331.04 -6.99 -40.78 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -6.33 Total: 3.65 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -2.55 Total: -7.72 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: 2.83 Total: -31.91 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.91 Total: -25.45 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.79 -6.99 -40.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820001578.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.138 kcal (2) G-P(sol) polarization free energy of solvation -33.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds