Wall clock time and date at job start Tue Mar 31 2020 12:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47249 * 2 1 4 4 O 1.42892 * 109.47355 * 120.00359 * 2 1 3 5 5 C 1.35874 * 117.00331 * 181.56130 * 4 2 1 6 6 C 1.38830 * 119.93966 * 174.32270 * 5 4 2 7 7 C 1.37915 * 120.05861 * 179.97438 * 6 5 4 8 8 C 1.39334 * 119.94152 * 0.02562 * 7 6 5 9 9 C 1.48433 * 120.06156 * 179.97438 * 8 7 6 10 10 N 1.34054 * 126.67664 * 0.02562 * 9 8 7 11 11 N 1.28984 * 107.26856 * 179.97438 * 10 9 8 12 12 N 1.28727 * 108.94714 * 359.97438 * 11 10 9 13 13 H 0.97002 * 125.34132 * 179.97438 * 12 11 10 14 14 N 1.28873 * 109.31934 * 0.02562 * 12 11 10 15 15 C 1.39346 * 119.87729 * 0.25314 * 8 7 6 16 16 C 1.37911 * 119.93452 * 359.51359 * 15 8 7 17 17 C 1.50704 * 109.46914 * 240.00622 * 2 1 3 18 18 O 1.21215 * 119.99739 * 239.99681 * 17 2 1 19 19 O 1.34309 * 120.00420 * 59.99980 * 17 2 1 20 20 C 1.34915 * 117.00129 * 180.02562 * 19 17 2 21 21 H 1.07999 * 120.00208 * 359.97438 * 20 19 17 22 22 C 1.38762 * 119.99885 * 180.02562 * 20 19 17 23 23 N 1.31435 * 119.99779 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99766 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47091 * 89.99968 * 24 22 20 26 26 H 1.48500 * 109.47145 * 209.99808 * 24 22 20 27 27 H 1.48504 * 109.47409 * 330.00231 * 24 22 20 28 28 H 1.08999 * 109.47079 * 304.83255 * 1 2 3 29 29 H 1.09008 * 109.46860 * 64.82595 * 1 2 3 30 30 H 1.08994 * 109.47233 * 184.82478 * 1 2 3 31 31 H 1.09012 * 109.46952 * 172.55363 * 3 2 1 32 32 H 1.08998 * 109.47658 * 292.55179 * 3 2 1 33 33 H 1.09000 * 109.46817 * 52.55678 * 3 2 1 34 34 H 1.08000 * 119.96835 * 359.97438 * 6 5 4 35 35 H 1.08000 * 120.02543 * 180.02562 * 7 6 5 36 36 H 1.08003 * 120.02952 * 179.72156 * 15 8 7 37 37 H 1.08008 * 119.97003 * 180.23058 * 16 15 8 38 38 H 0.97002 * 119.99277 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1666 5 6 3.3529 -0.7342 1.3375 6 6 3.8799 -1.2689 2.5053 7 6 5.2463 -1.3320 2.6810 8 6 6.0982 -0.8581 1.6854 9 6 7.5692 -0.9242 1.8720 10 7 8.2200 -1.4106 2.9383 11 7 9.4826 -1.2856 2.7060 12 7 9.6433 -0.7464 1.5482 13 1 10.4983 -0.5438 1.1374 14 7 8.4899 -0.5170 1.0210 15 6 5.5664 -0.3166 0.5167 16 6 4.1993 -0.2604 0.3443 17 6 2.0323 -0.7103 -1.2306 18 8 2.7292 -1.6958 -1.1194 19 8 1.7078 -0.2514 -2.4504 20 6 2.1897 -0.9338 -3.5098 21 1 2.8068 -1.8065 -3.3546 22 6 1.8935 -0.5138 -4.7987 23 7 1.1429 0.5485 -4.9875 24 14 2.5613 -1.4583 -6.2654 25 1 1.5948 -2.5166 -6.6545 26 1 2.7608 -0.5270 -7.4048 27 1 3.8593 -2.0824 -5.9031 28 1 -0.3633 0.5870 0.8435 29 1 -0.3633 0.4372 -0.9301 30 1 -0.3633 -1.0240 0.0864 31 1 3.1219 1.4453 0.1332 32 1 1.7896 1.9165 -0.9490 33 1 1.5720 1.9933 0.8159 34 1 3.2191 -1.6356 3.2768 35 1 5.6557 -1.7484 3.5896 36 1 6.2244 0.0555 -0.2546 37 1 3.7866 0.1558 -0.5630 38 1 0.9355 0.8418 -5.8885 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820001578.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:36 Heat of formation + Delta-G solvation = 28.211654 kcal Electronic energy + Delta-G solvation = -26401.103249 eV Core-core repulsion = 22440.607529 eV Total energy + Delta-G solvation = -3960.495720 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.45123 -42.41020 -40.44513 -38.90651 -37.07557 -35.39622 -34.92673 -34.34186 -33.96476 -32.13170 -30.81276 -28.43115 -27.73523 -25.75375 -25.50077 -24.84320 -23.52751 -22.74808 -21.48091 -20.21848 -19.89129 -19.42051 -18.13502 -17.92778 -17.76373 -17.20279 -16.78435 -16.65946 -16.19043 -15.60321 -15.33523 -14.96557 -14.94099 -14.63220 -14.33897 -13.95994 -13.71862 -13.61489 -13.40194 -13.24735 -13.19978 -13.08551 -13.06412 -12.91312 -12.50802 -12.37164 -12.26079 -12.20695 -12.04477 -12.01162 -11.75382 -11.58436 -10.85802 -10.71616 -9.99714 -9.07413 -8.56611 -6.35590 -0.27350 0.18387 0.33298 1.21887 1.29445 1.32616 1.42795 1.47701 1.54527 1.89091 2.08819 2.52595 2.67845 2.76863 2.94178 3.15559 3.65718 3.70009 3.86612 3.88738 4.13164 4.23447 4.34117 4.38902 4.42708 4.56155 4.62078 4.68355 4.73499 4.82116 4.96165 5.07885 5.12552 5.16142 5.19017 5.33015 5.38379 5.60936 5.62175 5.79547 6.20295 6.59043 6.88504 7.11912 7.68062 8.62518 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.013356 B = 0.003880 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.950782 B = 7215.115361 C = 8801.219842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.134 3.866 3 C -0.185 4.185 4 O -0.287 6.287 5 C 0.148 3.852 6 C -0.151 4.151 7 C -0.034 4.034 8 C -0.070 4.070 9 C 0.222 3.778 10 N -0.289 5.289 11 N -0.053 5.053 12 N -0.202 5.202 13 H 0.494 0.506 14 N -0.307 5.307 15 C -0.051 4.051 16 C -0.197 4.197 17 C 0.371 3.629 18 O -0.565 6.565 19 O -0.226 6.226 20 C -0.420 4.420 21 H 0.077 0.923 22 C 0.005 3.995 23 N -0.893 5.893 24 Si 1.009 2.991 25 H -0.261 1.261 26 H -0.258 1.258 27 H -0.268 1.268 28 H 0.115 0.885 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.164 0.836 35 H 0.164 0.836 36 H 0.131 0.869 37 H 0.116 0.884 38 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.063 2.134 12.998 15.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.094 3.906 3 C -0.242 4.242 4 O -0.200 6.200 5 C 0.101 3.899 6 C -0.169 4.169 7 C -0.054 4.054 8 C -0.074 4.074 9 C -0.057 4.057 10 N -0.162 5.162 11 N -0.049 5.049 12 N -0.052 5.052 13 H 0.353 0.647 14 N -0.159 5.159 15 C -0.072 4.072 16 C -0.215 4.215 17 C 0.219 3.781 18 O -0.462 6.462 19 O -0.134 6.134 20 C -0.496 4.496 21 H 0.095 0.905 22 C -0.197 4.197 23 N -0.530 5.530 24 Si 0.828 3.172 25 H -0.185 1.185 26 H -0.182 1.182 27 H -0.192 1.192 28 H 0.133 0.867 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.131 0.869 34 H 0.182 0.818 35 H 0.182 0.818 36 H 0.149 0.851 37 H 0.133 0.867 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.561 1.810 13.289 16.471 hybrid contribution 0.520 -0.243 -1.853 1.940 sum 10.081 1.567 11.436 15.325 Atomic orbital electron populations 1.21832 0.86865 1.04338 1.05493 1.21451 0.98165 0.91898 0.79039 1.22771 1.03499 0.92256 1.05669 1.86139 1.19630 1.73324 1.40922 1.19343 0.82348 0.93888 0.94292 1.20576 0.95351 1.04479 0.96491 1.21103 0.91238 0.94827 0.98245 1.17160 0.85142 1.07866 0.97236 1.23602 0.95833 0.98403 0.87878 1.76028 0.96903 1.20063 1.23166 1.78785 1.12580 1.11888 1.01600 1.47738 1.09531 1.37123 1.10855 0.64738 1.74960 0.92009 1.23465 1.25491 1.20906 0.94063 0.96017 0.96180 1.21417 0.94504 1.06341 0.99282 1.24701 0.81130 0.85130 0.87187 1.90627 1.39440 1.28738 1.87436 1.83882 1.64123 1.52041 1.13318 1.21342 1.33392 1.11667 0.83166 0.90495 1.26365 0.95965 0.97230 1.00101 1.70041 1.35075 1.23771 1.24129 0.84745 0.78743 0.77913 0.75767 1.18549 1.18200 1.19218 0.86666 0.89670 0.91647 0.90591 0.90240 0.86900 0.81802 0.81834 0.85064 0.86658 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.90 8.80 71.98 0.63 -3.27 16 2 C 0.13 4.93 1.05 -11.54 -0.01 4.92 16 3 C -0.19 -5.79 8.11 71.98 0.58 -5.21 16 4 O -0.29 -10.22 9.62 -73.08 -0.70 -10.92 16 5 C 0.15 5.15 5.56 22.55 0.13 5.27 16 6 C -0.15 -4.20 9.97 22.33 0.22 -3.98 16 7 C -0.03 -0.90 9.69 22.46 0.22 -0.68 16 8 C -0.07 -2.10 5.88 -20.03 -0.12 -2.22 16 9 C 0.22 6.20 7.93 137.37 1.09 7.29 16 10 N -0.29 -7.67 12.23 -52.19 -0.64 -8.31 16 11 N -0.05 -1.18 13.47 37.02 0.50 -0.68 16 12 N -0.20 -3.52 7.90 37.02 0.29 -3.23 16 13 H 0.49 3.41 8.96 -347.53 -3.12 0.29 16 14 N -0.31 -7.60 12.08 -52.14 -0.63 -8.23 16 15 C -0.05 -1.73 9.69 22.46 0.22 -1.51 16 16 C -0.20 -7.40 5.57 22.33 0.12 -7.28 16 17 C 0.37 18.26 4.61 71.24 0.33 18.59 16 18 O -0.56 -30.82 13.14 27.19 0.36 -30.46 16 19 O -0.23 -12.69 9.32 14.94 0.14 -12.55 16 20 C -0.42 -24.87 9.65 67.95 0.66 -24.21 16 21 H 0.08 4.72 6.86 -2.91 -0.02 4.70 16 22 C 0.00 0.27 5.49 84.88 0.47 0.74 16 23 N -0.89 -50.69 13.67 21.63 0.30 -50.40 16 24 Si 1.01 42.73 29.55 68.60 2.03 44.76 16 25 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 26 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 27 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 28 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.08 2.79 8.00 -2.38 -0.02 2.77 16 30 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.08 2.45 4.67 -2.38 -0.01 2.43 16 32 H 0.08 2.70 7.93 -2.39 -0.02 2.68 16 33 H 0.11 2.62 8.13 -2.39 -0.02 2.60 16 34 H 0.16 3.58 8.06 -2.91 -0.02 3.55 16 35 H 0.16 3.44 7.88 -2.91 -0.02 3.42 16 36 H 0.13 4.26 7.88 -2.91 -0.02 4.23 16 37 H 0.12 4.94 3.77 -2.91 -0.01 4.93 16 38 H 0.28 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -75.78 331.04 4.20 -71.57 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: -1.97 Total: 20.00 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: 4.54 Total: -11.55 kcal Atomic # 7 Polarization: -70.67 SS G_CDS: -0.18 Total: -70.85 kcal Atomic # 8 Polarization: -53.73 SS G_CDS: -0.21 Total: -53.94 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -75.78 4.20 -71.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820001578.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.785 kcal (2) G-P(sol) polarization free energy of solvation -75.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds