Wall clock time and date at job start Tue Mar 31 2020 11:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46489 * 120.00335 * 2 1 4 4 C 1.50706 * 109.47230 * 90.00190 * 3 2 1 5 5 H 1.08004 * 119.99817 * 0.02562 * 4 3 2 6 6 C 1.37867 * 120.00374 * 180.02562 * 4 3 2 7 7 N 1.31525 * 120.00015 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00207 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47202 * 89.99978 * 8 6 4 10 10 H 1.48500 * 109.47195 * 209.99750 * 8 6 4 11 11 H 1.48501 * 109.47147 * 330.00045 * 8 6 4 12 12 C 1.34785 * 119.99676 * 180.02562 * 2 1 3 13 13 O 1.21600 * 119.99891 * 187.01563 * 12 2 1 14 14 C 1.47516 * 120.00086 * 7.01303 * 12 2 1 15 15 C 1.39749 * 120.05663 * 20.62025 * 14 12 2 16 16 C 1.37718 * 120.01926 * 179.97438 * 15 14 12 17 17 C 1.39033 * 120.12975 * 359.97438 * 16 15 14 18 18 N 1.39303 * 119.94489 * 179.97438 * 17 16 15 19 19 C 1.39610 * 120.11220 * 0.02562 * 17 16 15 20 20 O 1.36020 * 120.00881 * 179.97438 * 19 17 16 21 21 C 1.42903 * 116.99375 * 179.97438 * 20 19 17 22 22 F 1.39895 * 109.47252 * 59.99947 * 21 20 19 23 23 F 1.39899 * 109.46634 * 179.97438 * 21 20 19 24 24 F 1.39899 * 109.47084 * 299.99570 * 21 20 19 25 25 C 1.38022 * 119.97723 * 359.73722 * 19 17 16 26 26 H 1.09000 * 109.47632 * 87.67527 * 1 2 3 27 27 H 1.09003 * 109.47178 * 207.67262 * 1 2 3 28 28 H 1.08998 * 109.47117 * 327.66543 * 1 2 3 29 29 H 1.08998 * 109.47303 * 330.00869 * 3 2 1 30 30 H 1.08998 * 109.47862 * 209.99991 * 3 2 1 31 31 H 0.97000 * 119.99566 * 179.97438 * 7 6 4 32 32 H 1.08004 * 119.99331 * 0.02562 * 15 14 12 33 33 H 1.07998 * 119.93239 * 180.02562 * 16 15 14 34 34 H 0.97005 * 119.99887 * 359.97438 * 18 17 16 35 35 H 0.96995 * 119.99830 * 180.02562 * 18 17 16 36 36 H 1.08002 * 120.06903 * 180.28191 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4488 1.7036 1.4209 5 1 2.0982 1.0956 2.2418 6 6 3.1261 2.8777 1.6728 7 7 3.5535 3.6179 0.6732 8 14 3.4369 3.4172 3.4340 9 1 4.7319 2.8605 3.9011 10 1 3.4843 4.9002 3.4964 11 1 2.3415 2.9199 4.3047 12 6 2.1388 -1.1673 -0.0005 13 8 3.3480 -1.1714 0.1281 14 6 1.4095 -2.4400 -0.1571 15 6 0.1317 -2.4494 -0.7230 16 6 -0.5483 -3.6380 -0.8693 17 6 0.0341 -4.8307 -0.4553 18 7 -0.6574 -6.0307 -0.6046 19 6 1.3103 -4.8276 0.1108 20 8 1.8778 -5.9956 0.5156 21 6 3.1859 -5.9179 1.0854 22 9 3.1519 -5.1028 2.2219 23 9 3.6150 -7.2001 1.4444 24 9 4.0713 -5.3747 0.1482 25 6 1.9978 -3.6396 0.2550 26 1 -0.3634 0.0417 -1.0268 27 1 -0.3634 -0.9101 0.4773 28 1 -0.3633 0.8683 0.5496 29 1 1.6084 2.0283 -0.5137 30 1 3.1499 1.1383 -0.5138 31 1 4.0297 4.4442 0.8506 32 1 -0.3223 -1.5244 -1.0465 33 1 -1.5355 -3.6437 -1.3072 34 1 -1.5447 -6.0337 -0.9967 35 1 -0.2521 -6.8632 -0.3157 36 1 2.9870 -3.6360 0.6886 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823446060.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:33 Heat of formation + Delta-G solvation = -176.087806 kcal Electronic energy + Delta-G solvation = -27061.045057 eV Core-core repulsion = 22517.540757 eV Total energy + Delta-G solvation = -4543.504301 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.47551 -48.23849 -48.03480 -40.62620 -39.07206 -37.44061 -35.00517 -34.64600 -32.59187 -30.56420 -29.38125 -27.61949 -26.13553 -26.00326 -23.64248 -22.75383 -22.14744 -20.15280 -19.27283 -19.16850 -18.60149 -17.31848 -17.21881 -16.69199 -16.50113 -15.42312 -15.38447 -15.20475 -14.90100 -14.66043 -14.54721 -14.52092 -14.48300 -14.38292 -14.24221 -14.13844 -13.63910 -13.31575 -13.02373 -12.78780 -12.57011 -12.26269 -12.14950 -11.66083 -11.23927 -10.95906 -10.90713 -10.63050 -10.45700 -10.13018 -9.60820 -9.00563 -8.86825 -8.40780 -7.73989 -7.56738 -6.01797 -4.06058 1.07117 1.15820 1.38036 2.80452 3.20800 3.34070 3.40161 3.42655 3.51395 3.70015 3.85735 3.93788 4.13753 4.47502 4.57862 4.83089 4.93930 5.09751 5.27535 5.32637 5.49009 5.61565 5.77707 5.84464 6.03783 6.18895 6.21711 6.37433 6.58808 7.06629 7.15163 7.42770 7.43657 7.54090 7.94606 8.25211 8.39235 8.92068 9.08491 9.58854 11.06343 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.015923 B = 0.003883 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.081609 B = 7209.888182 C = 8364.703153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.595 5.595 3 C 0.246 3.754 4 C -0.524 4.524 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.548 3.452 13 O -0.534 6.534 14 C -0.142 4.142 15 C -0.072 4.072 16 C -0.182 4.182 17 C 0.237 3.763 18 N -0.867 5.867 19 C 0.007 3.993 20 O -0.317 6.317 21 C 0.604 3.396 22 F -0.162 7.162 23 F -0.137 7.137 24 F -0.161 7.161 25 C -0.085 4.085 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.035 0.965 30 H 0.044 0.956 31 H 0.263 0.737 32 H 0.160 0.840 33 H 0.138 0.862 34 H 0.402 0.598 35 H 0.404 0.596 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.829 -20.435 -3.446 23.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.327 5.327 3 C 0.127 3.873 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.335 3.665 13 O -0.412 6.412 14 C -0.147 4.147 15 C -0.091 4.091 16 C -0.205 4.205 17 C 0.131 3.869 18 N -0.407 5.407 19 C -0.039 4.039 20 O -0.238 6.238 21 C 0.513 3.487 22 F -0.144 7.144 23 F -0.118 7.118 24 F -0.143 7.143 25 C -0.105 4.105 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.177 0.823 33 H 0.156 0.844 34 H 0.231 0.769 35 H 0.232 0.768 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.103 -20.364 -3.407 22.987 hybrid contribution 0.325 0.031 1.112 1.159 sum -9.778 -20.333 -2.295 22.678 Atomic orbital electron populations 1.22214 0.81909 1.03105 0.99963 1.48016 1.06014 1.07606 1.71038 1.19326 0.92463 0.77824 0.97661 1.21433 1.36445 1.06124 0.92301 0.92386 1.24927 0.95358 0.96383 0.97426 1.69936 1.38495 1.14393 1.30701 0.86497 0.78818 0.77454 0.84648 1.20540 1.21178 1.19928 1.17972 0.87164 0.83159 0.78216 1.90769 1.13953 1.86835 1.49690 1.19791 0.95768 0.93843 1.05311 1.22207 0.92947 0.99239 0.94712 1.20447 1.01811 0.89963 1.08293 1.17111 0.87691 0.88019 0.94076 1.42271 1.20832 1.06221 1.71328 1.17824 0.94028 0.83206 1.08815 1.86217 1.28310 1.32582 1.76658 1.19312 0.78972 0.74420 0.75947 1.93331 1.95935 1.72979 1.52181 1.93282 1.88594 1.38509 1.91448 1.93337 1.69694 1.85684 1.65604 1.21401 1.00122 0.90375 0.98623 0.93081 0.91065 0.90765 0.94731 0.93833 0.92742 0.82297 0.84396 0.76922 0.76784 0.83848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.10 8.64 59.85 0.52 1.62 16 2 N -0.60 -12.76 2.86 -184.21 -0.53 -13.29 16 3 C 0.25 6.46 5.12 -5.20 -0.03 6.44 16 4 C -0.52 -15.03 9.39 -34.44 -0.32 -15.36 16 5 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -26.74 13.29 55.43 0.74 -26.01 16 8 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 9 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 12 C 0.55 12.02 7.50 -12.47 -0.09 11.93 16 13 O -0.53 -14.12 16.18 5.28 0.09 -14.03 16 14 C -0.14 -2.40 5.56 -104.96 -0.58 -2.99 16 15 C -0.07 -0.92 7.61 -39.21 -0.30 -1.22 16 16 C -0.18 -1.84 9.86 -39.48 -0.39 -2.23 16 17 C 0.24 2.58 6.77 -83.66 -0.57 2.01 16 18 N -0.87 -6.32 9.06 32.50 0.29 -6.02 16 19 C 0.01 0.09 6.50 -39.15 -0.25 -0.16 16 20 O -0.32 -3.89 9.60 -19.80 -0.19 -4.08 16 21 C 0.60 7.63 3.42 101.05 0.35 7.97 16 22 F -0.16 -2.26 15.58 2.25 0.04 -2.22 16 23 F -0.14 -1.52 17.53 2.25 0.04 -1.48 16 24 F -0.16 -2.24 15.55 2.25 0.04 -2.20 16 25 C -0.09 -1.39 7.79 -39.07 -0.30 -1.69 16 26 H 0.05 0.63 6.89 -51.93 -0.36 0.27 16 27 H 0.07 0.94 5.39 -51.93 -0.28 0.66 16 28 H 0.07 1.17 8.09 -51.93 -0.42 0.75 16 29 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 30 H 0.04 1.29 7.53 -51.93 -0.39 0.89 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.16 1.76 4.01 -52.48 -0.21 1.55 16 33 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.40 1.84 8.83 -40.82 -0.36 1.48 16 35 H 0.40 2.74 8.17 -40.82 -0.33 2.40 16 36 H 0.14 2.55 4.80 -52.49 -0.25 2.30 16 LS Contribution 320.07 15.07 4.82 4.82 Total: -1.00 -34.27 320.07 -4.75 -39.03 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -2.99 Total: 0.41 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: -2.07 Total: 7.97 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: 0.50 Total: -45.32 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.10 Total: -18.12 kcal Atomic # 9 Polarization: -6.01 SS G_CDS: 0.11 Total: -5.90 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.27 -4.75 -39.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823446060.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.062 kcal (2) G-P(sol) polarization free energy of solvation -34.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds