Wall clock time and date at job start Tue Mar 31 2020 11:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46489 * 120.00335 * 2 1 4 4 C 1.50706 * 109.47230 * 90.00190 * 3 2 1 5 5 H 1.08004 * 119.99817 * 0.02562 * 4 3 2 6 6 C 1.37867 * 120.00374 * 180.02562 * 4 3 2 7 7 N 1.31525 * 120.00015 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00207 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47202 * 89.99978 * 8 6 4 10 10 H 1.48500 * 109.47195 * 209.99750 * 8 6 4 11 11 H 1.48501 * 109.47147 * 330.00045 * 8 6 4 12 12 C 1.34785 * 119.99676 * 180.02562 * 2 1 3 13 13 O 1.21600 * 119.99891 * 187.01563 * 12 2 1 14 14 C 1.47516 * 120.00086 * 7.01303 * 12 2 1 15 15 C 1.39749 * 120.05663 * 20.62025 * 14 12 2 16 16 C 1.37718 * 120.01926 * 179.97438 * 15 14 12 17 17 C 1.39033 * 120.12975 * 359.97438 * 16 15 14 18 18 N 1.39303 * 119.94489 * 179.97438 * 17 16 15 19 19 C 1.39610 * 120.11220 * 0.02562 * 17 16 15 20 20 O 1.36020 * 120.00881 * 179.97438 * 19 17 16 21 21 C 1.42903 * 116.99375 * 179.97438 * 20 19 17 22 22 F 1.39895 * 109.47252 * 59.99947 * 21 20 19 23 23 F 1.39899 * 109.46634 * 179.97438 * 21 20 19 24 24 F 1.39899 * 109.47084 * 299.99570 * 21 20 19 25 25 C 1.38022 * 119.97723 * 359.73722 * 19 17 16 26 26 H 1.09000 * 109.47632 * 87.67527 * 1 2 3 27 27 H 1.09003 * 109.47178 * 207.67262 * 1 2 3 28 28 H 1.08998 * 109.47117 * 327.66543 * 1 2 3 29 29 H 1.08998 * 109.47303 * 330.00869 * 3 2 1 30 30 H 1.08998 * 109.47862 * 209.99991 * 3 2 1 31 31 H 0.97000 * 119.99566 * 179.97438 * 7 6 4 32 32 H 1.08004 * 119.99331 * 0.02562 * 15 14 12 33 33 H 1.07998 * 119.93239 * 180.02562 * 16 15 14 34 34 H 0.97005 * 119.99887 * 359.97438 * 18 17 16 35 35 H 0.96995 * 119.99830 * 180.02562 * 18 17 16 36 36 H 1.08002 * 120.06903 * 180.28191 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4488 1.7036 1.4209 5 1 2.0982 1.0956 2.2418 6 6 3.1261 2.8777 1.6728 7 7 3.5535 3.6179 0.6732 8 14 3.4369 3.4172 3.4340 9 1 4.7319 2.8605 3.9011 10 1 3.4843 4.9002 3.4964 11 1 2.3415 2.9199 4.3047 12 6 2.1388 -1.1673 -0.0005 13 8 3.3480 -1.1714 0.1281 14 6 1.4095 -2.4400 -0.1571 15 6 0.1317 -2.4494 -0.7230 16 6 -0.5483 -3.6380 -0.8693 17 6 0.0341 -4.8307 -0.4553 18 7 -0.6574 -6.0307 -0.6046 19 6 1.3103 -4.8276 0.1108 20 8 1.8778 -5.9956 0.5156 21 6 3.1859 -5.9179 1.0854 22 9 3.1519 -5.1028 2.2219 23 9 3.6150 -7.2001 1.4444 24 9 4.0713 -5.3747 0.1482 25 6 1.9978 -3.6396 0.2550 26 1 -0.3634 0.0417 -1.0268 27 1 -0.3634 -0.9101 0.4773 28 1 -0.3633 0.8683 0.5496 29 1 1.6084 2.0283 -0.5137 30 1 3.1499 1.1383 -0.5138 31 1 4.0297 4.4442 0.8506 32 1 -0.3223 -1.5244 -1.0465 33 1 -1.5355 -3.6437 -1.3072 34 1 -1.5447 -6.0337 -0.9967 35 1 -0.2521 -6.8632 -0.3157 36 1 2.9870 -3.6360 0.6886 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823446060.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:32 Heat of formation + Delta-G solvation = -201.685399 kcal Electronic energy + Delta-G solvation = -27062.155052 eV Core-core repulsion = 22517.540757 eV Total energy + Delta-G solvation = -4544.614296 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.51123 -49.23338 -49.11714 -41.72864 -40.49341 -38.53396 -36.72968 -35.69386 -34.64647 -31.65968 -30.69314 -29.18059 -27.63184 -27.15316 -25.31751 -23.82634 -23.50376 -21.36106 -20.41103 -20.21190 -19.86304 -18.70649 -18.20479 -18.13212 -17.99245 -17.10150 -16.52757 -16.36074 -16.25518 -16.00408 -15.86249 -15.59323 -15.55381 -15.51965 -15.45843 -15.24010 -14.78418 -14.56820 -14.34880 -14.20377 -14.03194 -13.63468 -13.47259 -13.29222 -12.94944 -12.76254 -12.58482 -12.23857 -12.01476 -11.70660 -11.59074 -10.70861 -10.64215 -9.86919 -9.44674 -8.53466 -8.21382 -6.36105 -0.04482 0.16734 0.37305 1.35975 1.39715 1.49066 1.78731 1.91501 2.28044 2.43403 2.70444 2.73939 2.79275 2.93567 3.07592 3.60856 3.61953 3.87477 4.08860 4.29916 4.40638 4.56211 4.63915 4.74955 4.95436 4.98980 5.10885 5.23992 5.26790 5.36580 5.56084 5.64169 5.85083 6.06894 6.36671 6.69763 6.76108 6.89917 7.27765 7.44944 8.85096 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.015923 B = 0.003883 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.081609 B = 7209.888182 C = 8364.703153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.602 5.602 3 C 0.260 3.740 4 C -0.542 4.542 5 H 0.049 0.951 6 C 0.009 3.991 7 N -0.927 5.927 8 Si 0.965 3.035 9 H -0.283 1.283 10 H -0.271 1.271 11 H -0.263 1.263 12 C 0.538 3.462 13 O -0.602 6.602 14 C -0.176 4.176 15 C -0.059 4.059 16 C -0.165 4.165 17 C 0.257 3.743 18 N -0.844 5.844 19 C -0.007 4.007 20 O -0.306 6.306 21 C 0.606 3.394 22 F -0.173 7.173 23 F -0.126 7.126 24 F -0.172 7.172 25 C -0.101 4.101 26 H 0.092 0.908 27 H 0.099 0.901 28 H 0.068 0.932 29 H 0.034 0.966 30 H -0.004 1.004 31 H 0.268 0.732 32 H 0.179 0.821 33 H 0.189 0.811 34 H 0.421 0.579 35 H 0.409 0.591 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.459 -22.175 -3.551 26.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.332 5.332 3 C 0.139 3.861 4 C -0.581 4.581 5 H 0.067 0.933 6 C -0.190 4.190 7 N -0.567 5.567 8 Si 0.790 3.210 9 H -0.209 1.209 10 H -0.196 1.196 11 H -0.187 1.187 12 C 0.329 3.671 13 O -0.485 6.485 14 C -0.181 4.181 15 C -0.077 4.077 16 C -0.187 4.187 17 C 0.147 3.853 18 N -0.383 5.383 19 C -0.053 4.053 20 O -0.226 6.226 21 C 0.515 3.485 22 F -0.155 7.155 23 F -0.107 7.107 24 F -0.154 7.154 25 C -0.121 4.121 26 H 0.110 0.890 27 H 0.117 0.883 28 H 0.087 0.913 29 H 0.052 0.948 30 H 0.014 0.986 31 H 0.076 0.924 32 H 0.196 0.804 33 H 0.206 0.794 34 H 0.253 0.747 35 H 0.239 0.761 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -13.831 -22.156 -3.529 26.356 hybrid contribution 1.365 0.403 1.074 1.783 sum -12.466 -21.754 -2.455 25.192 Atomic orbital electron populations 1.22612 0.77964 1.04301 1.02820 1.47997 1.08479 1.05908 1.70787 1.18808 0.91116 0.80147 0.96061 1.21690 1.36934 1.06376 0.93094 0.93269 1.25818 0.94863 0.96393 1.01901 1.70043 1.38933 1.14836 1.32901 0.85451 0.78537 0.77661 0.79370 1.20944 1.19584 1.18680 1.18839 0.86779 0.84824 0.76679 1.90708 1.16986 1.87953 1.52852 1.19363 0.97849 0.91089 1.09840 1.22353 0.90903 1.01318 0.93168 1.20906 1.03130 0.88130 1.06568 1.17306 0.86476 0.89675 0.91867 1.42320 1.21255 1.05210 1.69547 1.17910 0.95092 0.82393 1.09906 1.86214 1.27839 1.32025 1.76565 1.19304 0.79107 0.74548 0.75541 1.93310 1.95991 1.73473 1.52692 1.93303 1.88518 1.37550 1.91323 1.93317 1.70126 1.85985 1.65979 1.21214 0.99523 0.91649 0.99752 0.89039 0.88294 0.91339 0.94781 0.98582 0.92355 0.80415 0.79376 0.74658 0.76109 0.86732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.86 8.64 127.77 1.10 2.96 16 2 N -0.60 -26.57 2.86 -854.95 -2.44 -29.01 16 3 C 0.26 14.37 5.12 85.64 0.44 14.81 16 4 C -0.54 -32.30 9.39 25.60 0.24 -32.06 16 5 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 6 C 0.01 0.54 5.46 84.65 0.46 1.01 16 7 N -0.93 -56.91 13.29 21.45 0.28 -56.62 16 8 Si 0.97 46.11 29.54 68.60 2.03 48.14 16 9 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 12 C 0.54 24.86 7.50 86.69 0.65 25.51 16 13 O -0.60 -34.59 16.18 -4.03 -0.07 -34.65 16 14 C -0.18 -5.98 5.56 -20.08 -0.11 -6.10 16 15 C -0.06 -1.30 7.61 22.51 0.17 -1.13 16 16 C -0.16 -2.45 9.86 22.34 0.22 -2.23 16 17 C 0.26 4.49 6.77 38.48 0.26 4.75 16 18 N -0.84 -7.93 9.06 -51.09 -0.46 -8.39 16 19 C -0.01 -0.17 6.50 22.55 0.15 -0.03 16 20 O -0.31 -7.13 9.60 -93.78 -0.90 -8.03 16 21 C 0.61 15.47 3.42 113.37 0.39 15.86 16 22 F -0.17 -5.01 15.58 44.97 0.70 -4.31 16 23 F -0.13 -2.72 17.53 44.97 0.79 -1.93 16 24 F -0.17 -5.03 15.55 44.97 0.70 -4.33 16 25 C -0.10 -3.36 7.79 22.60 0.18 -3.19 16 26 H 0.09 1.93 6.89 -2.39 -0.02 1.91 16 27 H 0.10 2.33 5.39 -2.39 -0.01 2.32 16 28 H 0.07 2.07 8.09 -2.39 -0.02 2.05 16 29 H 0.03 1.85 8.07 -2.39 -0.02 1.83 16 30 H 0.00 -0.25 7.53 -2.39 -0.02 -0.27 16 31 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 32 H 0.18 3.17 4.01 -2.91 -0.01 3.15 16 33 H 0.19 1.00 8.06 -2.91 -0.02 0.98 16 34 H 0.42 1.22 8.83 -92.70 -0.82 0.40 16 35 H 0.41 3.67 8.17 -92.71 -0.76 2.92 16 36 H 0.11 4.42 4.80 -2.91 -0.01 4.40 16 Total: -1.00 -81.84 320.07 4.39 -77.45 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -0.38 Total: 1.51 kcal Atomic # 6 Polarization: 16.03 SS G_CDS: 4.15 Total: 20.17 kcal Atomic # 7 Polarization: -91.40 SS G_CDS: -2.62 Total: -94.02 kcal Atomic # 8 Polarization: -41.72 SS G_CDS: -0.97 Total: -42.68 kcal Atomic # 9 Polarization: -12.76 SS G_CDS: 2.19 Total: -10.57 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -81.84 4.39 -77.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823446060.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.238 kcal (2) G-P(sol) polarization free energy of solvation -81.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds