Wall clock time and date at job start Tue Mar 31 2020 11:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.46991 * 2 1 4 4 C 1.36910 * 119.99889 * 277.50646 * 3 2 1 5 5 H 1.08006 * 119.99765 * 192.76759 * 4 3 2 6 6 C 1.39010 * 120.00230 * 12.75896 * 4 3 2 7 7 N 1.31388 * 119.99916 * 13.30069 * 6 4 3 8 8 Si 1.86797 * 120.00087 * 193.29067 * 6 4 3 9 9 H 1.48508 * 109.46936 * 90.00717 * 8 6 4 10 10 H 1.48501 * 109.47408 * 210.00237 * 8 6 4 11 11 H 1.48499 * 109.47473 * 330.00690 * 8 6 4 12 12 C 1.34773 * 120.00153 * 97.50654 * 3 2 1 13 13 O 1.21641 * 120.00234 * 187.80464 * 12 3 2 14 14 C 1.47422 * 120.00003 * 7.79974 * 12 3 2 15 15 C 1.39812 * 120.05758 * 314.25194 * 14 12 3 16 16 C 1.37703 * 120.01119 * 179.97438 * 15 14 12 17 17 C 1.39051 * 120.13166 * 359.97438 * 16 15 14 18 18 N 1.39299 * 119.93749 * 179.97438 * 17 16 15 19 19 C 1.39628 * 120.12714 * 0.02562 * 17 16 15 20 20 O 1.36013 * 120.01183 * 179.97438 * 19 17 16 21 21 C 1.42899 * 116.99898 * 179.97438 * 20 19 17 22 22 F 1.39899 * 109.47453 * 59.99707 * 21 20 19 23 23 F 1.39900 * 109.46794 * 180.02562 * 21 20 19 24 24 F 1.39906 * 109.46929 * 299.99936 * 21 20 19 25 25 C 1.38016 * 119.98072 * 359.73776 * 19 17 16 26 26 H 1.09006 * 109.46935 * 278.04338 * 1 2 3 27 27 H 1.09004 * 109.47282 * 38.04010 * 1 2 3 28 28 H 1.08994 * 109.47125 * 158.04278 * 1 2 3 29 29 H 1.08996 * 109.47163 * 119.99563 * 2 1 3 30 30 H 1.09001 * 109.47139 * 240.00340 * 2 1 3 31 31 H 0.96994 * 120.00098 * 179.97438 * 7 6 4 32 32 H 1.08007 * 119.99876 * 359.97438 * 15 14 12 33 33 H 1.07997 * 119.92921 * 180.02562 * 16 15 14 34 34 H 0.97008 * 120.00083 * 0.02562 * 18 17 16 35 35 H 0.97002 * 120.00507 * 179.97438 * 18 17 16 36 36 H 1.07995 * 120.06802 * 180.25425 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1004 2.0783 -1.1755 5 1 2.6456 3.0099 -1.2140 6 6 1.4824 1.5869 -2.3196 7 7 0.6109 0.6080 -2.2266 8 14 1.8906 2.3185 -3.9892 9 1 3.0306 1.5789 -4.5883 10 1 0.7074 2.2099 -4.8799 11 1 2.2585 3.7480 -3.8268 12 6 2.3867 1.9658 1.1571 13 8 2.6562 3.1517 1.1807 14 6 2.4629 1.1679 2.3944 15 6 1.4284 0.2873 2.7247 16 6 1.5008 -0.4579 3.8804 17 6 2.6019 -0.3372 4.7209 18 7 2.6708 -1.0926 5.8892 19 6 3.6383 0.5405 4.3966 20 8 4.7140 0.6571 5.2207 21 6 5.7371 1.5735 4.8263 22 9 5.1977 2.8606 4.7279 23 9 6.7608 1.5680 5.7797 24 9 6.2546 1.1887 3.5847 25 6 3.5731 1.2862 3.2370 26 1 -0.3633 0.1438 1.0176 27 1 -0.3634 0.8094 -0.6333 28 1 -0.3633 -0.9531 -0.3842 29 1 1.8933 -0.5137 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 0.1794 0.2654 -3.0248 32 1 0.5722 0.1915 2.0733 33 1 0.7011 -1.1380 4.1340 34 1 1.9511 -1.7024 6.1157 35 1 3.4386 -1.0095 6.4761 36 1 4.3758 1.9624 2.9827 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823542532.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:22 Heat of formation + Delta-G solvation = -162.002940 kcal Electronic energy + Delta-G solvation = -27655.074955 eV Core-core repulsion = 23112.181420 eV Total energy + Delta-G solvation = -4542.893535 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.33687 -48.10611 -47.89054 -40.30486 -38.77087 -37.15466 -35.22723 -34.34128 -31.75136 -30.34463 -29.44804 -28.64746 -26.03118 -24.96782 -22.78844 -22.50517 -22.06984 -20.18628 -19.21938 -19.02520 -18.64318 -17.04295 -17.01255 -16.81618 -16.45490 -15.26725 -15.12390 -14.86962 -14.69741 -14.45185 -14.42532 -14.37232 -14.33626 -14.11860 -14.02182 -13.60281 -13.45670 -13.37749 -12.85275 -12.53267 -12.39382 -11.99725 -11.53657 -11.19689 -11.08969 -10.87373 -10.70014 -10.51082 -10.20988 -9.99244 -9.88827 -8.95157 -8.53754 -8.45510 -7.73412 -7.30564 -6.19919 -3.86047 1.47445 1.50055 1.56953 2.96134 3.14344 3.24050 3.29546 3.62458 3.79395 3.88411 4.05202 4.09027 4.26060 4.76578 4.88754 5.10236 5.23706 5.37835 5.53616 5.61829 5.86553 6.10513 6.14247 6.40535 6.50986 6.66085 6.74734 6.84795 6.87788 7.02190 7.28093 7.44739 7.49884 7.69718 7.95696 8.06677 8.50652 9.15154 9.38675 9.95392 10.61751 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.018032 B = 0.004324 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.408222 B = 6473.561399 C = 7600.938413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.122 3.878 3 N -0.431 5.431 4 C -0.293 4.293 5 H 0.104 0.896 6 C 0.023 3.977 7 N -0.869 5.869 8 Si 0.929 3.071 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.270 1.270 12 C 0.478 3.522 13 O -0.589 6.589 14 C -0.110 4.110 15 C -0.077 4.077 16 C -0.178 4.178 17 C 0.223 3.777 18 N -0.872 5.872 19 C 0.008 3.992 20 O -0.317 6.317 21 C 0.604 3.396 22 F -0.162 7.162 23 F -0.139 7.139 24 F -0.164 7.164 25 C -0.102 4.102 26 H 0.009 0.991 27 H 0.109 0.891 28 H 0.041 0.959 29 H 0.046 0.954 30 H 0.081 0.919 31 H 0.265 0.735 32 H 0.157 0.843 33 H 0.134 0.866 34 H 0.400 0.600 35 H 0.401 0.599 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.613 -6.734 13.482 15.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.001 4.001 3 N -0.148 5.148 4 C -0.421 4.421 5 H 0.121 0.879 6 C -0.178 4.178 7 N -0.510 5.510 8 Si 0.756 3.244 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.195 1.195 12 C 0.267 3.733 13 O -0.475 6.475 14 C -0.115 4.115 15 C -0.095 4.095 16 C -0.200 4.200 17 C 0.117 3.883 18 N -0.412 5.412 19 C -0.038 4.038 20 O -0.238 6.238 21 C 0.513 3.487 22 F -0.144 7.144 23 F -0.121 7.121 24 F -0.146 7.146 25 C -0.122 4.122 26 H 0.027 0.973 27 H 0.127 0.873 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.174 0.826 33 H 0.152 0.848 34 H 0.228 0.772 35 H 0.229 0.771 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.687 -6.305 13.407 15.267 hybrid contribution 0.426 0.122 -0.604 0.750 sum 4.113 -6.184 12.802 14.801 Atomic orbital electron populations 1.22468 0.95711 1.04229 0.96725 1.21511 0.95386 0.83162 1.00020 1.43780 1.54014 1.11578 1.05469 1.19812 1.30669 1.06814 0.84837 0.87852 1.25338 0.95018 0.97375 1.00100 1.70414 1.24749 1.27425 1.28450 0.85861 0.77879 0.79510 0.81117 1.20420 1.20943 1.19451 1.17688 0.85805 0.87067 0.82732 1.90631 1.56312 1.15169 1.85392 1.19825 0.94914 0.99358 0.97418 1.22125 0.99278 0.92576 0.95570 1.20407 0.97828 1.05536 0.96258 1.17007 0.91806 0.90911 0.88532 1.42179 1.26892 1.48260 1.23885 1.17815 0.87853 1.04610 0.93523 1.86199 1.29127 1.59457 1.49012 1.19321 0.78273 0.76726 0.74382 1.93333 1.85779 1.39688 1.95597 1.93268 1.57728 1.96196 1.64883 1.93317 1.87389 1.90788 1.43147 1.21281 0.99858 0.98555 0.92509 0.97286 0.87264 0.93965 0.93568 0.90110 0.92440 0.82579 0.84799 0.77195 0.77094 0.84636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 8.34 37.16 0.31 -2.45 16 2 C 0.12 2.69 4.89 -4.04 -0.02 2.67 16 3 N -0.43 -10.97 2.63 -116.03 -0.30 -11.28 16 4 C -0.29 -7.98 9.34 -15.00 -0.14 -8.12 16 5 H 0.10 2.98 7.33 -52.48 -0.38 2.59 16 6 C 0.02 0.59 5.13 -17.46 -0.09 0.50 16 7 N -0.87 -21.33 7.22 55.50 0.40 -20.93 16 8 Si 0.93 20.18 29.57 -169.99 -5.03 15.15 16 9 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 10 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 12 C 0.48 12.13 7.20 -12.52 -0.09 12.04 16 13 O -0.59 -17.02 16.66 5.24 0.09 -16.93 16 14 C -0.11 -2.27 5.13 -104.96 -0.54 -2.81 16 15 C -0.08 -1.32 7.36 -39.19 -0.29 -1.61 16 16 C -0.18 -2.46 9.86 -39.48 -0.39 -2.85 16 17 C 0.22 3.07 6.77 -83.65 -0.57 2.50 16 18 N -0.87 -8.52 9.06 32.50 0.29 -8.23 16 19 C 0.01 0.12 6.50 -39.14 -0.25 -0.13 16 20 O -0.32 -4.52 9.60 -19.78 -0.19 -4.71 16 21 C 0.60 8.48 3.42 101.05 0.35 8.83 16 22 F -0.16 -2.49 15.58 2.25 0.04 -2.45 16 23 F -0.14 -1.70 17.53 2.25 0.04 -1.66 16 24 F -0.16 -2.47 15.55 2.25 0.04 -2.44 16 25 C -0.10 -1.93 7.90 -39.05 -0.31 -2.24 16 26 H 0.01 0.17 5.39 -51.93 -0.28 -0.11 16 27 H 0.11 2.64 5.77 -51.93 -0.30 2.34 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.91 4.94 -51.93 -0.26 0.65 16 30 H 0.08 1.90 6.78 -51.93 -0.35 1.54 16 31 H 0.26 6.19 8.31 -40.82 -0.34 5.85 16 32 H 0.16 2.71 3.41 -52.48 -0.18 2.53 16 33 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 34 H 0.40 2.83 8.83 -40.82 -0.36 2.47 16 35 H 0.40 3.60 8.17 -40.82 -0.33 3.27 16 36 H 0.14 2.68 5.08 -52.49 -0.27 2.41 16 LS Contribution 306.76 15.07 4.62 4.62 Total: -1.00 -29.71 306.76 -4.73 -34.44 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -2.69 Total: 8.09 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -2.03 Total: 6.32 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.39 Total: -40.43 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.10 Total: -21.64 kcal Atomic # 9 Polarization: -6.66 SS G_CDS: 0.11 Total: -6.55 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.03 Total: 15.15 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.71 -4.73 -34.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823542532.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.566 kcal (2) G-P(sol) polarization free energy of solvation -29.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds