Wall clock time and date at job start Tue Mar 31 2020 11:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.46991 * 2 1 4 4 C 1.36910 * 119.99889 * 277.50646 * 3 2 1 5 5 H 1.08006 * 119.99765 * 192.76759 * 4 3 2 6 6 C 1.39010 * 120.00230 * 12.75896 * 4 3 2 7 7 N 1.31388 * 119.99916 * 13.30069 * 6 4 3 8 8 Si 1.86797 * 120.00087 * 193.29067 * 6 4 3 9 9 H 1.48508 * 109.46936 * 90.00717 * 8 6 4 10 10 H 1.48501 * 109.47408 * 210.00237 * 8 6 4 11 11 H 1.48499 * 109.47473 * 330.00690 * 8 6 4 12 12 C 1.34773 * 120.00153 * 97.50654 * 3 2 1 13 13 O 1.21641 * 120.00234 * 187.80464 * 12 3 2 14 14 C 1.47422 * 120.00003 * 7.79974 * 12 3 2 15 15 C 1.39812 * 120.05758 * 314.25194 * 14 12 3 16 16 C 1.37703 * 120.01119 * 179.97438 * 15 14 12 17 17 C 1.39051 * 120.13166 * 359.97438 * 16 15 14 18 18 N 1.39299 * 119.93749 * 179.97438 * 17 16 15 19 19 C 1.39628 * 120.12714 * 0.02562 * 17 16 15 20 20 O 1.36013 * 120.01183 * 179.97438 * 19 17 16 21 21 C 1.42899 * 116.99898 * 179.97438 * 20 19 17 22 22 F 1.39899 * 109.47453 * 59.99707 * 21 20 19 23 23 F 1.39900 * 109.46794 * 180.02562 * 21 20 19 24 24 F 1.39906 * 109.46929 * 299.99936 * 21 20 19 25 25 C 1.38016 * 119.98072 * 359.73776 * 19 17 16 26 26 H 1.09006 * 109.46935 * 278.04338 * 1 2 3 27 27 H 1.09004 * 109.47282 * 38.04010 * 1 2 3 28 28 H 1.08994 * 109.47125 * 158.04278 * 1 2 3 29 29 H 1.08996 * 109.47163 * 119.99563 * 2 1 3 30 30 H 1.09001 * 109.47139 * 240.00340 * 2 1 3 31 31 H 0.96994 * 120.00098 * 179.97438 * 7 6 4 32 32 H 1.08007 * 119.99876 * 359.97438 * 15 14 12 33 33 H 1.07997 * 119.92921 * 180.02562 * 16 15 14 34 34 H 0.97008 * 120.00083 * 0.02562 * 18 17 16 35 35 H 0.97002 * 120.00507 * 179.97438 * 18 17 16 36 36 H 1.07995 * 120.06802 * 180.25425 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1004 2.0783 -1.1755 5 1 2.6456 3.0099 -1.2140 6 6 1.4824 1.5869 -2.3196 7 7 0.6109 0.6080 -2.2266 8 14 1.8906 2.3185 -3.9892 9 1 3.0306 1.5789 -4.5883 10 1 0.7074 2.2099 -4.8799 11 1 2.2585 3.7480 -3.8268 12 6 2.3867 1.9658 1.1571 13 8 2.6562 3.1517 1.1807 14 6 2.4629 1.1679 2.3944 15 6 1.4284 0.2873 2.7247 16 6 1.5008 -0.4579 3.8804 17 6 2.6019 -0.3372 4.7209 18 7 2.6708 -1.0926 5.8892 19 6 3.6383 0.5405 4.3966 20 8 4.7140 0.6571 5.2207 21 6 5.7371 1.5735 4.8263 22 9 5.1977 2.8606 4.7279 23 9 6.7608 1.5680 5.7797 24 9 6.2546 1.1887 3.5847 25 6 3.5731 1.2862 3.2370 26 1 -0.3633 0.1438 1.0176 27 1 -0.3634 0.8094 -0.6333 28 1 -0.3633 -0.9531 -0.3842 29 1 1.8933 -0.5137 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 0.1794 0.2654 -3.0248 32 1 0.5722 0.1915 2.0733 33 1 0.7011 -1.1380 4.1340 34 1 1.9511 -1.7024 6.1157 35 1 3.4386 -1.0095 6.4761 36 1 4.3758 1.9624 2.9827 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823542532.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:21 Heat of formation + Delta-G solvation = -182.188748 kcal Electronic energy + Delta-G solvation = -27655.950278 eV Core-core repulsion = 23112.181420 eV Total energy + Delta-G solvation = -4543.768857 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.48629 -49.20817 -49.08806 -41.63127 -40.41041 -38.45757 -37.16154 -35.56340 -33.64437 -31.83106 -31.01417 -29.98298 -27.37767 -26.67211 -24.21866 -23.86719 -23.68276 -21.64633 -20.54839 -20.18751 -19.92451 -18.75398 -18.19181 -18.09858 -18.07665 -16.83784 -16.40798 -16.32430 -15.96519 -15.91326 -15.79101 -15.55943 -15.55620 -15.49200 -15.23378 -15.19682 -15.01472 -14.59618 -14.44127 -14.02993 -13.91467 -13.47376 -13.07247 -12.90493 -12.82508 -12.55734 -12.32066 -12.20938 -11.89819 -11.66651 -11.49165 -10.82525 -10.39817 -9.85008 -9.63108 -8.45072 -8.12675 -5.89176 0.14586 0.20694 0.40724 1.39013 1.43558 1.54467 1.80347 2.01881 2.27702 2.64910 2.73033 2.84199 2.94186 3.05340 3.16369 3.65741 3.81651 3.98941 4.20471 4.34514 4.49066 4.60333 4.76409 4.92947 5.01094 5.16093 5.26616 5.34257 5.44770 5.49619 5.54582 5.72465 6.08416 6.19131 6.43166 6.57685 6.96034 7.18003 7.46692 8.03168 8.65302 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.018032 B = 0.004324 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.408222 B = 6473.561399 C = 7600.938413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.126 3.874 3 N -0.440 5.440 4 C -0.342 4.342 5 H 0.069 0.931 6 C 0.001 3.999 7 N -0.864 5.864 8 Si 0.988 3.012 9 H -0.270 1.270 10 H -0.268 1.268 11 H -0.282 1.282 12 C 0.465 3.535 13 O -0.645 6.645 14 C -0.148 4.148 15 C -0.074 4.074 16 C -0.161 4.161 17 C 0.245 3.755 18 N -0.847 5.847 19 C 0.001 3.999 20 O -0.305 6.305 21 C 0.606 3.394 22 F -0.172 7.172 23 F -0.125 7.125 24 F -0.172 7.172 25 C -0.113 4.113 26 H 0.035 0.965 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.272 0.728 32 H 0.155 0.845 33 H 0.182 0.818 34 H 0.419 0.581 35 H 0.409 0.591 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.556 -9.637 15.247 18.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.004 3.996 3 N -0.156 5.156 4 C -0.470 4.470 5 H 0.087 0.913 6 C -0.201 4.201 7 N -0.503 5.503 8 Si 0.812 3.188 9 H -0.195 1.195 10 H -0.193 1.193 11 H -0.208 1.208 12 C 0.256 3.744 13 O -0.535 6.535 14 C -0.153 4.153 15 C -0.093 4.093 16 C -0.184 4.184 17 C 0.136 3.864 18 N -0.387 5.387 19 C -0.045 4.045 20 O -0.226 6.226 21 C 0.515 3.485 22 F -0.154 7.154 23 F -0.106 7.106 24 F -0.154 7.154 25 C -0.133 4.133 26 H 0.053 0.947 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.172 0.828 33 H 0.199 0.801 34 H 0.251 0.749 35 H 0.239 0.761 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.604 -9.297 15.218 18.022 hybrid contribution 0.758 0.935 -0.996 1.562 sum 3.363 -8.362 14.222 16.837 Atomic orbital electron populations 1.22249 0.94462 1.03560 0.97740 1.21596 0.96289 0.81446 1.00290 1.43981 1.53930 1.12611 1.05069 1.19649 1.33187 1.07265 0.86888 0.91280 1.25958 0.94255 0.97690 1.02227 1.70534 1.23544 1.26804 1.29431 0.85013 0.78263 0.78077 0.77411 1.19538 1.19288 1.20775 1.18513 0.84700 0.86980 0.84214 1.90556 1.58586 1.17784 1.86616 1.19454 0.97605 1.01869 0.96386 1.22056 0.97977 0.92305 0.96982 1.20770 0.98610 1.04721 0.94292 1.17118 0.90512 0.89533 0.89223 1.42199 1.27685 1.46829 1.22016 1.17835 0.88943 1.04885 0.92860 1.86196 1.28737 1.59306 1.48345 1.19297 0.78451 0.76344 0.74397 1.93317 1.86005 1.40429 1.95665 1.93300 1.57013 1.96102 1.64195 1.93304 1.87456 1.90806 1.43852 1.21116 0.99187 0.99255 0.93774 0.94706 0.90872 0.92220 0.90961 0.92066 0.91757 0.82763 0.80102 0.74908 0.76127 0.86751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.95 8.34 71.98 0.60 -4.35 16 2 C 0.13 5.57 4.89 86.38 0.42 5.99 16 3 N -0.44 -23.45 2.63 -639.25 -1.68 -25.13 16 4 C -0.34 -19.72 9.34 84.09 0.79 -18.93 16 5 H 0.07 4.34 7.33 -2.91 -0.02 4.32 16 6 C 0.00 0.06 5.13 84.94 0.44 0.49 16 7 N -0.86 -42.47 7.22 21.67 0.16 -42.32 16 8 Si 0.99 42.12 29.57 68.60 2.03 44.15 16 9 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 10 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 C 0.46 25.00 7.20 86.66 0.62 25.62 16 13 O -0.65 -40.31 16.66 -4.16 -0.07 -40.38 16 14 C -0.15 -6.22 5.13 -20.08 -0.10 -6.32 16 15 C -0.07 -2.42 7.36 22.52 0.17 -2.26 16 16 C -0.16 -3.74 9.86 22.34 0.22 -3.52 16 17 C 0.24 5.74 6.77 38.49 0.26 6.00 16 18 N -0.85 -12.03 9.06 -51.07 -0.46 -12.50 16 19 C 0.00 0.03 6.50 22.55 0.15 0.18 16 20 O -0.31 -8.13 9.60 -93.70 -0.90 -9.02 16 21 C 0.61 16.77 3.42 113.37 0.39 17.16 16 22 F -0.17 -5.41 15.58 44.97 0.70 -4.71 16 23 F -0.12 -2.89 17.53 44.97 0.79 -2.10 16 24 F -0.17 -5.26 15.55 44.97 0.70 -4.57 16 25 C -0.11 -4.36 7.90 22.61 0.18 -4.18 16 26 H 0.03 1.22 5.39 -2.38 -0.01 1.20 16 27 H 0.07 3.55 5.77 -2.38 -0.01 3.53 16 28 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.07 2.79 4.94 -2.39 -0.01 2.77 16 30 H 0.06 2.90 6.78 -2.39 -0.02 2.88 16 31 H 0.27 12.46 8.31 -92.71 -0.77 11.69 16 32 H 0.16 5.02 3.41 -2.91 -0.01 5.01 16 33 H 0.18 2.54 8.06 -2.91 -0.02 2.52 16 34 H 0.42 3.29 8.83 -92.70 -0.82 2.47 16 35 H 0.41 5.29 8.17 -92.71 -0.76 4.53 16 36 H 0.11 4.81 5.08 -2.91 -0.01 4.79 16 Total: -1.00 -70.14 306.76 5.02 -65.12 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -0.37 Total: 15.58 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: 4.12 Total: 15.88 kcal Atomic # 7 Polarization: -77.96 SS G_CDS: -1.99 Total: -79.94 kcal Atomic # 8 Polarization: -48.44 SS G_CDS: -0.97 Total: -49.41 kcal Atomic # 9 Polarization: -13.57 SS G_CDS: 2.19 Total: -11.38 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -70.14 5.02 -65.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823542532.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.071 kcal (2) G-P(sol) polarization free energy of solvation -70.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds