Wall clock time and date at job start Tue Mar 31 2020 12:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47006 * 207.76400 * 3 2 1 5 5 N 1.46908 * 109.47030 * 179.58889 * 4 3 2 6 6 C 1.46906 * 110.99875 * 288.07491 * 5 4 3 7 7 C 1.50697 * 109.47075 * 160.35597 * 6 5 4 8 8 H 1.07998 * 119.99847 * 4.65338 * 7 6 5 9 9 C 1.37869 * 119.99976 * 184.65437 * 7 6 5 10 10 N 1.31514 * 120.00060 * 0.02562 * 9 7 6 11 11 Si 1.86808 * 120.00092 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.46890 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.46842 * 120.00080 * 11 9 7 14 14 H 1.48503 * 109.47198 * 240.00171 * 11 9 7 15 15 C 1.46899 * 110.99779 * 164.12500 * 5 4 3 16 16 C 1.50699 * 109.46914 * 293.94717 * 15 5 4 17 17 C 1.33607 * 125.12100 * 89.72530 * 16 15 5 18 18 C 1.37982 * 115.06176 * 179.85445 * 17 16 15 19 19 C 1.34733 * 114.70842 * 0.43232 * 18 17 16 20 20 C 1.47928 * 125.26533 * 179.73431 * 19 18 17 21 21 N 1.34200 * 126.69702 * 359.69899 * 20 19 18 22 22 N 1.28983 * 107.24571 * 179.83406 * 21 20 19 23 23 N 1.28719 * 108.99523 * 0.44232 * 22 21 20 24 24 H 0.97004 * 125.31711 * 179.72187 * 23 22 21 25 25 N 1.28866 * 109.36248 * 359.71810 * 23 22 21 26 26 S 1.75858 * 125.12914 * 270.02898 * 16 15 5 27 27 H 1.09007 * 109.47416 * 87.77039 * 3 2 1 28 28 H 1.08996 * 109.47761 * 327.76722 * 3 2 1 29 29 H 1.09000 * 109.47016 * 59.58966 * 4 3 2 30 30 H 1.08999 * 109.47306 * 299.58611 * 4 3 2 31 31 H 1.08992 * 109.47178 * 280.35903 * 6 5 4 32 32 H 1.09002 * 109.47041 * 40.35835 * 6 5 4 33 33 H 0.97009 * 119.99777 * 179.97438 * 10 9 7 34 34 H 1.08995 * 109.47397 * 53.95578 * 15 5 4 35 35 H 1.09006 * 109.47053 * 173.95639 * 15 5 4 36 36 H 1.08000 * 122.46859 * 0.02562 * 17 16 15 37 37 H 1.07996 * 122.64449 * 180.17822 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1173 1.2773 0.6720 5 7 4.5864 1.2734 0.6808 6 6 5.1044 0.2904 1.6417 7 6 6.5348 -0.0395 1.3011 8 1 7.0352 0.4882 0.5026 9 6 7.2046 -1.0149 2.0087 10 7 6.5951 -1.6578 2.9807 11 14 8.9781 -1.4233 1.5869 12 1 9.4301 -0.5641 0.4633 13 1 9.8377 -1.1793 2.7730 14 1 9.0762 -2.8509 1.1896 15 6 5.1147 2.6147 0.9633 16 6 4.7656 3.5415 -0.1726 17 6 3.6503 4.2729 -0.2528 18 6 3.5437 5.0538 -1.3853 19 6 4.5796 4.9499 -2.2406 20 6 4.7036 5.6752 -3.5239 21 7 3.8188 6.5388 -4.0458 22 7 4.3025 6.9500 -5.1686 23 7 5.4371 6.3769 -5.3711 24 1 6.0033 6.5125 -6.1469 25 7 5.7033 5.5949 -4.3820 26 16 5.7610 3.8178 -1.5957 27 1 2.9714 -0.0392 -1.0269 28 1 2.9717 -0.8684 0.5481 29 1 2.7480 1.3209 1.6966 30 1 2.7597 2.1463 0.1196 31 1 5.0572 0.7063 2.6481 32 1 4.5013 -0.6164 1.5947 33 1 7.0663 -2.3444 3.4783 34 1 4.6759 2.9909 1.8873 35 1 6.1983 2.5633 1.0702 36 1 2.8897 4.2562 0.5137 37 1 2.6949 5.6945 -1.5734 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826381320.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:54 Heat of formation + Delta-G solvation = 188.943324 kcal Electronic energy + Delta-G solvation = -22719.403951 eV Core-core repulsion = 19240.923701 eV Total energy + Delta-G solvation = -3478.480250 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.096 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.59098 -38.50226 -37.11567 -36.04955 -34.48435 -33.59431 -32.74478 -31.50983 -29.83476 -27.23748 -26.00350 -24.78230 -23.69171 -22.98219 -22.55506 -20.28532 -20.01389 -18.39956 -17.42647 -17.30793 -16.93382 -16.58294 -15.51314 -15.24802 -14.69143 -14.41072 -14.20745 -14.10423 -13.68654 -13.36006 -13.00320 -12.91995 -12.63020 -12.44325 -12.23651 -12.11866 -11.91285 -11.54619 -11.45302 -11.32734 -11.24275 -11.03525 -10.95448 -10.89597 -10.69922 -10.54680 -10.41050 -9.88531 -9.36635 -8.52990 -8.41408 -8.35843 -7.53557 -6.12173 -4.14032 0.48372 0.99387 1.51163 2.04685 2.06977 2.10880 2.89934 2.98583 3.03349 3.26175 3.35060 3.38594 3.58284 4.16507 4.22003 4.38233 4.86916 5.09707 5.15619 5.24783 5.25239 5.35162 5.45101 5.48360 5.56156 5.82572 5.85779 6.07562 6.14172 6.16583 6.23030 6.26010 6.28200 6.51333 6.98439 7.14303 7.66892 7.78362 7.87403 7.96141 7.99797 8.34792 8.93428 9.51340 10.98081 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.011250 B = 0.003702 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.347611 B = 7562.590118 C = 9374.159446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.220 3.780 3 C -0.027 4.027 4 C 0.053 3.947 5 N -0.527 5.527 6 C 0.188 3.812 7 C -0.508 4.508 8 H 0.065 0.935 9 C 0.058 3.942 10 N -0.897 5.897 11 Si 0.894 3.106 12 H -0.271 1.271 13 H -0.285 1.285 14 H -0.284 1.284 15 C 0.124 3.876 16 C -0.129 4.129 17 C -0.160 4.160 18 C -0.067 4.067 19 C -0.164 4.164 20 C 0.261 3.739 21 N -0.266 5.266 22 N -0.052 5.052 23 N -0.228 5.228 24 H 0.475 0.525 25 N -0.297 5.297 26 S 0.205 5.795 27 H 0.114 0.886 28 H 0.117 0.883 29 H 0.035 0.965 30 H 0.075 0.925 31 H -0.005 1.005 32 H 0.042 0.958 33 H 0.262 0.738 34 H 0.050 0.950 35 H 0.100 0.900 36 H 0.144 0.856 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.189 13.711 -11.336 17.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.098 4.098 3 C -0.067 4.067 4 C -0.077 4.077 5 N -0.252 5.252 6 C 0.064 3.936 7 C -0.547 4.547 8 H 0.083 0.917 9 C -0.144 4.144 10 N -0.536 5.536 11 Si 0.722 3.278 12 H -0.196 1.196 13 H -0.212 1.212 14 H -0.210 1.210 15 C -0.005 4.005 16 C -0.250 4.250 17 C -0.190 4.190 18 C -0.103 4.103 19 C -0.285 4.285 20 C -0.019 4.019 21 N -0.140 5.140 22 N -0.047 5.047 23 N -0.074 5.074 24 H 0.329 0.671 25 N -0.149 5.149 26 S 0.471 5.529 27 H 0.132 0.868 28 H 0.135 0.865 29 H 0.054 0.946 30 H 0.094 0.906 31 H 0.013 0.987 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.118 0.882 36 H 0.161 0.839 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.456 13.274 -12.652 18.395 hybrid contribution 0.253 0.180 0.914 0.966 sum -1.203 13.454 -11.737 17.895 Atomic orbital electron populations 1.81158 1.13244 1.09414 1.09858 1.29444 0.95466 0.92509 0.92337 1.19363 0.80086 1.01901 1.05366 1.22010 0.90599 0.96251 0.98826 1.62109 1.04165 1.04777 1.54176 1.19897 0.96101 0.89571 0.88033 1.21146 0.96368 1.19814 1.17340 0.91697 1.24956 0.98351 0.96030 0.95037 1.69948 1.37043 1.24854 1.21758 0.86496 0.84680 0.78306 0.78292 1.19555 1.21166 1.21026 1.20577 1.02281 0.87038 0.90638 1.25109 0.97999 1.01533 1.00340 1.19974 0.99119 1.00021 0.99906 1.20218 0.98074 0.99379 0.92675 1.21180 1.03646 1.08045 0.95599 1.22528 0.87700 0.96540 0.95177 1.76160 1.24058 1.11900 1.01901 1.78877 0.96685 1.16886 1.12293 1.47657 1.15456 1.26445 1.17846 0.67072 1.75088 1.25485 1.15705 0.98652 1.84552 1.19662 1.36132 1.12522 0.86761 0.86529 0.94634 0.90641 0.98711 0.94054 0.92873 0.93168 0.88188 0.83870 0.83718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.69 18.54 42.15 0.78 -6.91 16 2 C 0.22 3.20 15.43 -20.76 -0.32 2.88 16 3 C -0.03 -0.36 5.77 -29.52 -0.17 -0.53 16 4 C 0.05 0.76 4.78 -3.82 -0.02 0.74 16 5 N -0.53 -9.05 4.37 -237.51 -1.04 -10.09 16 6 C 0.19 4.09 4.59 -4.97 -0.02 4.07 16 7 C -0.51 -12.49 8.61 -34.44 -0.30 -12.79 16 8 H 0.06 1.59 7.66 -52.49 -0.40 1.19 16 9 C 0.06 1.49 5.46 -17.82 -0.10 1.40 16 10 N -0.90 -24.43 13.29 55.43 0.74 -23.69 16 11 Si 0.89 20.05 29.54 -169.99 -5.02 15.03 16 12 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 13 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 15 C 0.12 1.92 5.28 -4.98 -0.03 1.89 16 16 C -0.13 -1.74 5.50 -35.93 -0.20 -1.94 16 17 C -0.16 -1.91 8.36 -41.30 -0.35 -2.26 16 18 C -0.07 -0.80 10.07 -40.92 -0.41 -1.21 16 19 C -0.16 -2.12 6.44 -36.86 -0.24 -2.36 16 20 C 0.26 3.38 8.16 -156.25 -1.28 2.11 16 21 N -0.27 -3.45 12.51 32.08 0.40 -3.05 16 22 N -0.05 -0.56 13.46 60.35 0.81 0.25 16 23 N -0.23 -1.90 7.90 60.35 0.48 -1.42 16 24 H 0.48 1.54 8.96 -340.33 -3.05 -1.51 16 25 N -0.30 -3.41 12.41 32.10 0.40 -3.01 16 26 S 0.20 2.74 23.30 -107.50 -2.50 0.23 16 27 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.12 1.66 6.52 -51.93 -0.34 1.32 16 29 H 0.04 0.52 8.05 -51.93 -0.42 0.10 16 30 H 0.08 0.99 5.39 -51.93 -0.28 0.71 16 31 H 0.00 -0.12 8.00 -51.93 -0.42 -0.53 16 32 H 0.04 0.94 6.24 -51.93 -0.32 0.62 16 33 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 34 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 35 H 0.10 1.70 7.32 -51.93 -0.38 1.32 16 36 H 0.14 1.49 7.82 -52.49 -0.41 1.08 16 37 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 343.68 15.07 5.18 5.18 Total: -1.00 -30.28 343.68 -9.62 -39.90 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -6.42 Total: -4.41 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -3.42 Total: -8.00 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: 2.57 Total: -47.93 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 16 Polarization: 2.74 SS G_CDS: -2.50 Total: 0.23 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.28 -9.62 -39.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826381320.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.843 kcal (2) G-P(sol) polarization free energy of solvation -30.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 198.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 188.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds