Wall clock time and date at job start Tue Mar 31 2020 12:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47006 * 207.76400 * 3 2 1 5 5 N 1.46908 * 109.47030 * 179.58889 * 4 3 2 6 6 C 1.46906 * 110.99875 * 288.07491 * 5 4 3 7 7 C 1.50697 * 109.47075 * 160.35597 * 6 5 4 8 8 H 1.07998 * 119.99847 * 4.65338 * 7 6 5 9 9 C 1.37869 * 119.99976 * 184.65437 * 7 6 5 10 10 N 1.31514 * 120.00060 * 0.02562 * 9 7 6 11 11 Si 1.86808 * 120.00092 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.46890 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.46842 * 120.00080 * 11 9 7 14 14 H 1.48503 * 109.47198 * 240.00171 * 11 9 7 15 15 C 1.46899 * 110.99779 * 164.12500 * 5 4 3 16 16 C 1.50699 * 109.46914 * 293.94717 * 15 5 4 17 17 C 1.33607 * 125.12100 * 89.72530 * 16 15 5 18 18 C 1.37982 * 115.06176 * 179.85445 * 17 16 15 19 19 C 1.34733 * 114.70842 * 0.43232 * 18 17 16 20 20 C 1.47928 * 125.26533 * 179.73431 * 19 18 17 21 21 N 1.34200 * 126.69702 * 359.69899 * 20 19 18 22 22 N 1.28983 * 107.24571 * 179.83406 * 21 20 19 23 23 N 1.28719 * 108.99523 * 0.44232 * 22 21 20 24 24 H 0.97004 * 125.31711 * 179.72187 * 23 22 21 25 25 N 1.28866 * 109.36248 * 359.71810 * 23 22 21 26 26 S 1.75858 * 125.12914 * 270.02898 * 16 15 5 27 27 H 1.09007 * 109.47416 * 87.77039 * 3 2 1 28 28 H 1.08996 * 109.47761 * 327.76722 * 3 2 1 29 29 H 1.09000 * 109.47016 * 59.58966 * 4 3 2 30 30 H 1.08999 * 109.47306 * 299.58611 * 4 3 2 31 31 H 1.08992 * 109.47178 * 280.35903 * 6 5 4 32 32 H 1.09002 * 109.47041 * 40.35835 * 6 5 4 33 33 H 0.97009 * 119.99777 * 179.97438 * 10 9 7 34 34 H 1.08995 * 109.47397 * 53.95578 * 15 5 4 35 35 H 1.09006 * 109.47053 * 173.95639 * 15 5 4 36 36 H 1.08000 * 122.46859 * 0.02562 * 17 16 15 37 37 H 1.07996 * 122.64449 * 180.17822 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1173 1.2773 0.6720 5 7 4.5864 1.2734 0.6808 6 6 5.1044 0.2904 1.6417 7 6 6.5348 -0.0395 1.3011 8 1 7.0352 0.4882 0.5026 9 6 7.2046 -1.0149 2.0087 10 7 6.5951 -1.6578 2.9807 11 14 8.9781 -1.4233 1.5869 12 1 9.4301 -0.5641 0.4633 13 1 9.8377 -1.1793 2.7730 14 1 9.0762 -2.8509 1.1896 15 6 5.1147 2.6147 0.9633 16 6 4.7656 3.5415 -0.1726 17 6 3.6503 4.2729 -0.2528 18 6 3.5437 5.0538 -1.3853 19 6 4.5796 4.9499 -2.2406 20 6 4.7036 5.6752 -3.5239 21 7 3.8188 6.5388 -4.0458 22 7 4.3025 6.9500 -5.1686 23 7 5.4371 6.3769 -5.3711 24 1 6.0033 6.5125 -6.1469 25 7 5.7033 5.5949 -4.3820 26 16 5.7610 3.8178 -1.5957 27 1 2.9714 -0.0392 -1.0269 28 1 2.9717 -0.8684 0.5481 29 1 2.7480 1.3209 1.6966 30 1 2.7597 2.1463 0.1196 31 1 5.0572 0.7063 2.6481 32 1 4.5013 -0.6164 1.5947 33 1 7.0663 -2.3444 3.4783 34 1 4.6759 2.9909 1.8873 35 1 6.1983 2.5633 1.0702 36 1 2.8897 4.2562 0.5137 37 1 2.6949 5.6945 -1.5734 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826381320.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:53 Heat of formation + Delta-G solvation = 169.632424 kcal Electronic energy + Delta-G solvation = -22720.241334 eV Core-core repulsion = 19240.923701 eV Total energy + Delta-G solvation = -3479.317633 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.096 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.44958 -39.65038 -38.27935 -37.32881 -35.37326 -34.72173 -34.39530 -32.67218 -31.11322 -28.73882 -27.24731 -25.64812 -24.90064 -24.45000 -23.52711 -21.68167 -20.89697 -19.30583 -18.63553 -18.34236 -18.15873 -18.01794 -16.79366 -16.51430 -16.07306 -15.81557 -15.43800 -15.20964 -14.86779 -14.46673 -14.25176 -14.11833 -13.84648 -13.62839 -13.51771 -13.38146 -13.17694 -12.91830 -12.64852 -12.55687 -12.41390 -12.37489 -12.23778 -12.14582 -12.03157 -11.83503 -11.59201 -11.41298 -11.16332 -10.47801 -9.43875 -9.37069 -8.95774 -8.08311 -6.14819 -0.47636 0.13375 0.50628 1.07381 1.12660 1.41713 1.47986 1.51938 1.61989 1.77493 1.84734 1.95732 2.49881 2.69848 2.96802 3.26124 3.32103 3.62470 3.97285 4.19083 4.19749 4.29118 4.36611 4.39975 4.60114 4.69784 4.76210 4.90450 5.01666 5.12730 5.17849 5.25861 5.34293 5.39899 5.54913 5.60044 5.79580 6.18835 6.37308 6.60908 6.67104 7.00994 7.09021 7.54256 9.01564 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.011250 B = 0.003702 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.347611 B = 7562.590118 C = 9374.159446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C 0.244 3.756 3 C -0.018 4.018 4 C 0.055 3.945 5 N -0.529 5.529 6 C 0.202 3.798 7 C -0.509 4.509 8 H 0.063 0.937 9 C 0.008 3.992 10 N -0.932 5.932 11 Si 0.951 3.049 12 H -0.263 1.263 13 H -0.286 1.286 14 H -0.285 1.285 15 C 0.128 3.872 16 C -0.143 4.143 17 C -0.143 4.143 18 C -0.066 4.066 19 C -0.163 4.163 20 C 0.246 3.754 21 N -0.287 5.287 22 N -0.053 5.053 23 N -0.198 5.198 24 H 0.495 0.505 25 N -0.304 5.304 26 S 0.187 5.813 27 H 0.131 0.869 28 H 0.109 0.891 29 H 0.035 0.965 30 H 0.095 0.905 31 H -0.029 1.029 32 H 0.030 0.970 33 H 0.261 0.739 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.163 0.837 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.175 14.872 -12.780 19.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.172 5.172 2 C -0.072 4.072 3 C -0.058 4.058 4 C -0.074 4.074 5 N -0.254 5.254 6 C 0.076 3.924 7 C -0.548 4.548 8 H 0.082 0.918 9 C -0.190 4.190 10 N -0.573 5.573 11 Si 0.778 3.222 12 H -0.187 1.187 13 H -0.212 1.212 14 H -0.211 1.211 15 C -0.001 4.001 16 C -0.263 4.263 17 C -0.174 4.174 18 C -0.102 4.102 19 C -0.284 4.284 20 C -0.035 4.035 21 N -0.160 5.160 22 N -0.048 5.048 23 N -0.050 5.050 24 H 0.354 0.646 25 N -0.157 5.157 26 S 0.453 5.547 27 H 0.149 0.851 28 H 0.127 0.873 29 H 0.053 0.947 30 H 0.113 0.887 31 H -0.011 1.011 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.181 0.819 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.436 14.463 -14.133 20.272 hybrid contribution 0.262 -0.073 1.256 1.286 sum -1.174 14.390 -12.876 19.345 Atomic orbital electron populations 1.81189 1.14266 1.10580 1.11179 1.29445 0.95269 0.91387 0.91144 1.19325 0.79243 1.01141 1.06124 1.22050 0.88683 0.97433 0.99264 1.61964 1.05924 1.05071 1.52425 1.19552 0.94880 0.90214 0.87749 1.21484 0.97767 1.18987 1.16550 0.91848 1.25672 1.01828 0.96334 0.95141 1.70054 1.38477 1.25734 1.23035 0.85596 0.80604 0.77922 0.78078 1.18721 1.21244 1.21075 1.20434 1.01078 0.86517 0.92041 1.24805 0.98979 1.02458 1.00039 1.20158 0.98621 0.98599 1.00005 1.20399 0.98241 0.99280 0.92232 1.21287 1.03522 1.07723 0.95881 1.22584 0.88219 0.97126 0.95563 1.76142 1.24727 1.12477 1.02657 1.78818 0.97255 1.16928 1.11792 1.47712 1.14879 1.24690 1.17669 0.64595 1.75053 1.25356 1.16190 0.99090 1.84586 1.20357 1.36859 1.12904 0.85109 0.87283 0.94699 0.88715 1.01093 0.95236 0.93037 0.92332 0.90215 0.81938 0.82160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.97 18.54 20.00 0.37 -15.60 16 2 C 0.24 6.75 15.43 89.44 1.38 8.13 16 3 C -0.02 -0.46 5.77 28.79 0.17 -0.29 16 4 C 0.06 1.50 4.78 86.30 0.41 1.91 16 5 N -0.53 -17.80 4.37 -905.34 -3.96 -21.76 16 6 C 0.20 8.84 4.59 85.55 0.39 9.23 16 7 C -0.51 -25.14 8.61 25.60 0.22 -24.92 16 8 H 0.06 3.09 7.66 -2.91 -0.02 3.07 16 9 C 0.01 0.43 5.46 84.65 0.46 0.89 16 10 N -0.93 -51.46 13.29 21.44 0.28 -51.17 16 11 Si 0.95 41.18 29.54 68.60 2.03 43.21 16 12 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 13 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 14 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 15 C 0.13 3.89 5.28 85.56 0.45 4.34 16 16 C -0.14 -3.63 5.50 24.63 0.14 -3.50 16 17 C -0.14 -3.07 8.36 21.16 0.18 -2.90 16 18 C -0.07 -1.42 10.07 21.40 0.22 -1.20 16 19 C -0.16 -3.96 6.44 24.04 0.15 -3.81 16 20 C 0.25 5.96 8.16 137.12 1.12 7.08 16 21 N -0.29 -6.95 12.51 -52.41 -0.66 -7.61 16 22 N -0.05 -1.04 13.46 37.02 0.50 -0.54 16 23 N -0.20 -2.88 7.90 37.02 0.29 -2.59 16 24 H 0.49 2.01 8.96 -347.50 -3.12 -1.11 16 25 N -0.30 -6.43 12.41 -52.36 -0.65 -7.08 16 26 S 0.19 4.79 23.30 -56.49 -1.32 3.48 16 27 H 0.13 2.95 8.14 -2.38 -0.02 2.93 16 28 H 0.11 3.03 6.52 -2.39 -0.02 3.02 16 29 H 0.03 0.97 8.05 -2.39 -0.02 0.95 16 30 H 0.09 2.23 5.39 -2.39 -0.01 2.22 16 31 H -0.03 -1.38 8.00 -2.39 -0.02 -1.40 16 32 H 0.03 1.37 6.24 -2.39 -0.01 1.35 16 33 H 0.26 13.79 8.31 -92.70 -0.77 13.01 16 34 H 0.06 1.66 8.12 -2.39 -0.02 1.64 16 35 H 0.08 2.72 7.32 -2.38 -0.02 2.71 16 36 H 0.16 2.85 7.82 -2.91 -0.02 2.82 16 37 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -64.17 343.68 0.21 -63.96 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -1.97 Total: 0.74 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: 5.29 Total: -5.03 kcal Atomic # 7 Polarization: -102.52 SS G_CDS: -3.82 Total: -106.34 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Atomic # 16 Polarization: 4.79 SS G_CDS: -1.32 Total: 3.48 kcal Total: -64.17 0.21 -63.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826381320.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 233.589 kcal (2) G-P(sol) polarization free energy of solvation -64.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds