Wall clock time and date at job start Tue Mar 31 2020 12:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 O 1.42893 * 110.29389 * 299.60595 * 9 7 2 11 11 C 1.54260 * 110.32277 * 61.73753 * 9 7 2 12 12 C 1.54376 * 105.06329 * 118.89437 * 11 9 7 13 13 N 1.48558 * 104.59478 * 23.85312 * 12 11 9 14 14 C 1.40078 * 110.99594 * 200.96100 * 13 12 11 15 15 N 1.33756 * 125.75571 * 239.56139 * 14 13 12 16 16 C 1.32715 * 109.20452 * 179.82842 * 15 14 13 17 17 C 1.40838 * 132.19756 * 180.12944 * 16 15 14 18 18 C 1.36109 * 119.34307 * 180.34035 * 17 16 15 19 19 C 1.40399 * 119.67591 * 359.97438 * 18 17 16 20 20 C 1.35019 * 120.27584 * 0.02562 * 19 18 17 21 21 N 1.36408 * 120.61640 * 359.95433 * 20 19 18 22 22 C 1.35774 * 125.75896 * 59.87603 * 14 13 12 23 23 N 1.48592 * 126.46466 * 0.02562 * 22 14 13 24 24 O 1.21809 * 119.99715 * 270.00251 * 23 22 14 25 25 O 1.21800 * 120.00328 * 89.99483 * 23 22 14 26 26 C 1.48559 * 104.22146 * 320.51803 * 13 12 11 27 27 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 28 28 H 0.96711 * 113.99913 * 59.29418 * 10 9 7 29 29 H 1.09008 * 110.32138 * 237.79359 * 11 9 7 30 30 H 1.09001 * 110.32342 * 359.97438 * 11 9 7 31 31 H 1.09004 * 110.41195 * 142.63249 * 12 11 9 32 32 H 1.08999 * 110.40967 * 264.95293 * 12 11 9 33 33 H 1.07993 * 120.32682 * 0.35643 * 17 16 15 34 34 H 1.07995 * 120.15827 * 179.97438 * 18 17 16 35 35 H 1.08009 * 119.86209 * 180.02562 * 19 18 17 36 36 H 1.07998 * 119.69252 * 180.02562 * 20 19 18 37 37 H 1.09006 * 110.41344 * 280.70633 * 26 13 12 38 38 H 1.08994 * 110.41171 * 158.26728 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 8 0.4350 -2.5949 1.1744 11 6 0.3846 -2.6232 -1.2648 12 6 0.9179 -3.8752 -1.9935 13 7 1.5552 -4.6872 -0.9251 14 6 2.4768 -5.5932 -1.4655 15 7 2.4272 -6.9243 -1.3443 16 6 3.4585 -7.4598 -1.9855 17 6 3.8690 -8.7945 -2.1688 18 6 4.9982 -9.0529 -2.8834 19 6 5.7357 -7.9889 -3.4267 20 6 5.3292 -6.7147 -3.2422 21 7 4.1991 -6.4425 -2.5284 22 6 3.5744 -5.2680 -2.1956 23 7 4.0154 -3.8979 -2.5647 24 8 3.6238 -3.3903 -3.6004 25 8 4.7684 -3.2822 -1.8315 26 6 2.2352 -3.6866 -0.0629 27 1 -0.4850 0.8400 0.0004 28 1 -0.2181 -1.8864 1.2573 29 1 -0.6632 -2.7588 -0.9964 30 1 0.5039 -1.7399 -1.8923 31 1 0.0970 -4.4269 -2.4518 32 1 1.6523 -3.5922 -2.7476 33 1 3.2933 -9.6049 -1.7468 34 1 5.3252 -10.0714 -3.0317 35 1 6.6320 -8.1905 -3.9946 36 1 5.9034 -5.9034 -3.6646 37 1 3.1773 -3.3742 -0.5133 38 1 2.4062 -4.0963 0.9326 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826614156.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:30 Heat of formation + Delta-G solvation = 77.534969 kcal Electronic energy + Delta-G solvation = -27601.180192 eV Core-core repulsion = 23642.823291 eV Total energy + Delta-G solvation = -3958.356900 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.57566 -41.82366 -39.03621 -37.49140 -36.51396 -34.82918 -34.22762 -32.10761 -31.04463 -30.08200 -28.75185 -28.12415 -26.23711 -24.89727 -23.63516 -23.01362 -22.11547 -20.59819 -19.78857 -19.60130 -18.76393 -17.87552 -17.37671 -16.92173 -16.63911 -16.43346 -16.29161 -15.41470 -15.06122 -14.94758 -14.40899 -13.98751 -13.31267 -13.04430 -12.58401 -12.47664 -12.44020 -12.22297 -11.71431 -11.61707 -11.51240 -11.42318 -11.31472 -11.16665 -11.01176 -10.73959 -10.61416 -10.47031 -10.36872 -9.94206 -9.36002 -9.08880 -8.58822 -8.57437 -8.41280 -8.10947 -6.19233 -4.27806 0.18233 0.36865 0.47102 0.88319 2.11361 2.18422 2.96811 3.27242 3.33492 3.35979 3.43155 3.80187 4.14256 4.23003 4.36142 4.49238 4.54762 4.80565 5.07825 5.11410 5.34019 5.40004 5.55770 5.62774 5.70234 5.76242 5.82393 5.98753 6.10132 6.23290 6.40864 6.46767 6.68282 6.87728 7.07078 7.09291 7.36754 7.48468 7.56524 7.58711 7.81719 8.14172 8.76528 9.40780 9.53406 10.87866 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.023103 B = 0.004348 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.679396 B = 6438.859431 C = 7149.698980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.900 3.100 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.536 4.536 8 H 0.066 0.934 9 C 0.260 3.740 10 O -0.584 6.584 11 C -0.118 4.118 12 C 0.028 3.972 13 N -0.450 5.450 14 C 0.346 3.654 15 N -0.457 5.457 16 C 0.274 3.726 17 C -0.079 4.079 18 C -0.083 4.083 19 C -0.131 4.131 20 C 0.056 3.944 21 N -0.340 5.340 22 C -0.073 4.073 23 N 0.049 4.951 24 O -0.116 6.116 25 O -0.104 6.104 26 C 0.043 3.957 27 H 0.267 0.733 28 H 0.382 0.618 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.166 0.834 34 H 0.153 0.847 35 H 0.161 0.839 36 H 0.163 0.837 37 H 0.061 0.939 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.137 -16.468 -8.704 21.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.728 3.272 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.575 4.575 8 H 0.084 0.916 9 C 0.219 3.781 10 O -0.393 6.393 11 C -0.157 4.157 12 C -0.098 4.098 13 N -0.173 5.173 14 C 0.114 3.886 15 N -0.178 5.178 16 C 0.031 3.969 17 C -0.099 4.099 18 C -0.107 4.107 19 C -0.152 4.152 20 C -0.068 4.068 21 N -0.016 5.016 22 C -0.267 4.267 23 N 0.582 4.418 24 O -0.338 6.338 25 O -0.329 6.329 26 C -0.083 4.083 27 H 0.077 0.923 28 H 0.233 0.767 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.183 0.817 34 H 0.171 0.829 35 H 0.178 0.822 36 H 0.180 0.820 37 H 0.079 0.921 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.104 -18.228 -7.695 21.779 hybrid contribution 1.486 2.583 -1.196 3.211 sum 10.590 -15.645 -8.891 20.880 Atomic orbital electron populations 1.69704 1.05932 1.27499 1.50334 1.24975 0.94987 0.99498 0.93591 0.86387 0.80442 0.82772 0.77622 1.19352 1.20788 1.20855 1.21705 0.93846 0.90262 1.51662 0.91590 1.19131 0.86368 0.90061 0.82534 1.86133 1.53099 1.54440 1.45583 1.22924 0.99857 0.93820 0.99063 1.23545 0.98560 0.95241 0.92443 1.62856 1.23228 1.14825 1.16416 1.19685 0.87493 0.91305 0.90070 1.70946 1.19424 1.05114 1.22354 1.21046 0.89612 0.89810 0.96470 1.20427 0.97834 0.91346 1.00336 1.21212 0.93591 1.00444 0.95466 1.20913 1.02002 0.90109 1.02166 1.21820 0.87864 1.00043 0.97037 1.42220 1.18522 1.06110 1.34714 1.22579 1.04352 0.78284 1.21451 1.42423 0.99125 1.00255 0.99961 1.94561 1.57124 1.69785 1.12361 1.94599 1.28518 1.61329 1.48465 1.23589 0.96892 0.91097 0.96687 0.92277 0.76715 0.91811 0.89957 0.90405 0.93397 0.81696 0.82888 0.82193 0.81992 0.92055 0.89737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.04 10.80 55.43 0.60 -23.44 16 2 C 0.07 1.93 5.02 -17.82 -0.09 1.84 16 3 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.54 -14.74 8.07 -34.44 -0.28 -15.01 16 8 H 0.07 1.84 7.58 -52.49 -0.40 1.44 16 9 C 0.26 6.72 1.06 -90.39 -0.10 6.63 16 10 O -0.58 -15.79 12.95 -35.23 -0.46 -16.25 16 11 C -0.12 -2.85 5.56 -25.35 -0.14 -2.99 16 12 C 0.03 0.60 6.38 -2.19 -0.01 0.59 16 13 N -0.45 -9.99 5.50 -169.09 -0.93 -10.92 16 14 C 0.35 6.92 6.15 -154.01 -0.95 5.98 16 15 N -0.46 -8.30 11.33 -11.81 -0.13 -8.43 16 16 C 0.27 3.88 7.80 -155.98 -1.22 2.66 16 17 C -0.08 -0.70 10.11 -39.36 -0.40 -1.10 16 18 C -0.08 -0.48 10.07 -39.53 -0.40 -0.88 16 19 C -0.13 -0.82 9.99 -39.91 -0.40 -1.22 16 20 C 0.06 0.56 10.95 -16.66 -0.18 0.37 16 21 N -0.34 -4.91 2.95 -58.95 -0.17 -5.09 16 22 C -0.07 -1.34 6.86 -141.87 -0.97 -2.31 16 23 N 0.05 0.94 3.28 33.47 0.11 1.05 16 24 O -0.12 -2.24 17.38 -29.46 -0.51 -2.75 16 25 O -0.10 -2.10 17.22 -29.46 -0.51 -2.61 16 26 C 0.04 1.02 5.64 -2.18 -0.01 1.01 16 27 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 28 H 0.38 10.31 7.28 45.56 0.33 10.65 16 29 H 0.06 1.55 7.98 -51.92 -0.41 1.13 16 30 H 0.08 2.11 7.25 -51.93 -0.38 1.73 16 31 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 32 H 0.05 1.03 4.96 -51.93 -0.26 0.77 16 33 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.15 0.31 8.06 -52.49 -0.42 -0.11 16 35 H 0.16 0.41 8.06 -52.48 -0.42 -0.01 16 36 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.06 1.46 4.04 -51.93 -0.21 1.25 16 38 H 0.08 2.05 8.08 -51.93 -0.42 1.63 16 LS Contribution 321.76 15.07 4.85 4.85 Total: -1.00 -32.17 321.76 -10.31 -42.48 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -2.99 Total: 9.46 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -5.14 Total: -4.43 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: -0.53 Total: -46.83 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -1.48 Total: -21.61 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.17 -10.31 -42.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826614156.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.016 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds