Wall clock time and date at job start Tue Mar 31 2020 12:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 O 1.42893 * 110.29389 * 299.60595 * 9 7 2 11 11 C 1.54260 * 110.32277 * 61.73753 * 9 7 2 12 12 C 1.54376 * 105.06329 * 118.89437 * 11 9 7 13 13 N 1.48558 * 104.59478 * 23.85312 * 12 11 9 14 14 C 1.40078 * 110.99594 * 200.96100 * 13 12 11 15 15 N 1.33756 * 125.75571 * 239.56139 * 14 13 12 16 16 C 1.32715 * 109.20452 * 179.82842 * 15 14 13 17 17 C 1.40838 * 132.19756 * 180.12944 * 16 15 14 18 18 C 1.36109 * 119.34307 * 180.34035 * 17 16 15 19 19 C 1.40399 * 119.67591 * 359.97438 * 18 17 16 20 20 C 1.35019 * 120.27584 * 0.02562 * 19 18 17 21 21 N 1.36408 * 120.61640 * 359.95433 * 20 19 18 22 22 C 1.35774 * 125.75896 * 59.87603 * 14 13 12 23 23 N 1.48592 * 126.46466 * 0.02562 * 22 14 13 24 24 O 1.21809 * 119.99715 * 270.00251 * 23 22 14 25 25 O 1.21800 * 120.00328 * 89.99483 * 23 22 14 26 26 C 1.48559 * 104.22146 * 320.51803 * 13 12 11 27 27 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 28 28 H 0.96711 * 113.99913 * 59.29418 * 10 9 7 29 29 H 1.09008 * 110.32138 * 237.79359 * 11 9 7 30 30 H 1.09001 * 110.32342 * 359.97438 * 11 9 7 31 31 H 1.09004 * 110.41195 * 142.63249 * 12 11 9 32 32 H 1.08999 * 110.40967 * 264.95293 * 12 11 9 33 33 H 1.07993 * 120.32682 * 0.35643 * 17 16 15 34 34 H 1.07995 * 120.15827 * 179.97438 * 18 17 16 35 35 H 1.08009 * 119.86209 * 180.02562 * 19 18 17 36 36 H 1.07998 * 119.69252 * 180.02562 * 20 19 18 37 37 H 1.09006 * 110.41344 * 280.70633 * 26 13 12 38 38 H 1.08994 * 110.41171 * 158.26728 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 8 0.4350 -2.5949 1.1744 11 6 0.3846 -2.6232 -1.2648 12 6 0.9179 -3.8752 -1.9935 13 7 1.5552 -4.6872 -0.9251 14 6 2.4768 -5.5932 -1.4655 15 7 2.4272 -6.9243 -1.3443 16 6 3.4585 -7.4598 -1.9855 17 6 3.8690 -8.7945 -2.1688 18 6 4.9982 -9.0529 -2.8834 19 6 5.7357 -7.9889 -3.4267 20 6 5.3292 -6.7147 -3.2422 21 7 4.1991 -6.4425 -2.5284 22 6 3.5744 -5.2680 -2.1956 23 7 4.0154 -3.8979 -2.5647 24 8 3.6238 -3.3903 -3.6004 25 8 4.7684 -3.2822 -1.8315 26 6 2.2352 -3.6866 -0.0629 27 1 -0.4850 0.8400 0.0004 28 1 -0.2181 -1.8864 1.2573 29 1 -0.6632 -2.7588 -0.9964 30 1 0.5039 -1.7399 -1.8923 31 1 0.0970 -4.4269 -2.4518 32 1 1.6523 -3.5922 -2.7476 33 1 3.2933 -9.6049 -1.7468 34 1 5.3252 -10.0714 -3.0317 35 1 6.6320 -8.1905 -3.9946 36 1 5.9034 -5.9034 -3.6646 37 1 3.1773 -3.3742 -0.5133 38 1 2.4062 -4.0963 0.9326 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826614156.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:29 Heat of formation + Delta-G solvation = 55.776458 kcal Electronic energy + Delta-G solvation = -27602.123711 eV Core-core repulsion = 23642.823291 eV Total energy + Delta-G solvation = -3959.300420 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.71230 -43.23482 -40.62601 -38.68821 -38.02086 -36.61786 -35.20372 -34.22593 -32.45224 -31.09162 -30.29668 -30.04675 -27.48713 -26.75651 -24.69416 -24.09193 -23.59630 -22.14703 -21.58259 -20.96888 -20.26597 -19.27606 -19.03497 -18.22737 -17.84963 -17.57498 -17.45535 -17.03756 -16.48279 -16.04566 -15.95104 -15.73063 -15.17142 -14.50237 -14.17249 -13.95039 -13.55062 -13.35457 -13.33178 -13.19887 -13.04637 -12.89945 -12.77543 -12.70447 -12.56855 -12.48002 -12.39033 -12.26193 -12.01414 -11.81052 -11.28599 -10.65958 -10.33008 -10.25799 -10.04285 -9.51240 -8.25789 -6.42250 -1.10083 -0.62805 -0.47234 -0.44710 0.97891 1.12406 1.39854 1.42578 1.55110 2.03326 2.18293 2.39711 2.87315 2.98752 3.14726 3.35401 3.61119 3.62904 3.79912 3.89534 3.93561 3.98491 4.13615 4.33124 4.39351 4.47491 4.57972 4.75280 4.78692 4.86588 4.92621 4.97813 5.15883 5.24346 5.34636 5.44582 5.48179 5.63276 5.71939 6.05306 6.07819 6.22600 6.62697 7.28689 7.39333 8.80629 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.023103 B = 0.004348 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.679396 B = 6438.859431 C = 7149.698980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.036 3.964 3 Si 0.960 3.040 4 H -0.273 1.273 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.562 4.562 8 H 0.051 0.949 9 C 0.248 3.752 10 O -0.593 6.593 11 C -0.106 4.106 12 C 0.037 3.963 13 N -0.458 5.458 14 C 0.318 3.682 15 N -0.496 5.496 16 C 0.270 3.730 17 C -0.096 4.096 18 C -0.043 4.043 19 C -0.093 4.093 20 C 0.014 3.986 21 N -0.338 5.338 22 C -0.096 4.096 23 N 0.056 4.944 24 O -0.117 6.117 25 O -0.138 6.138 26 C 0.052 3.948 27 H 0.273 0.727 28 H 0.379 0.621 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.046 0.954 33 H 0.191 0.809 34 H 0.211 0.789 35 H 0.212 0.788 36 H 0.169 0.831 37 H 0.058 0.942 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.385 -19.606 -10.513 25.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.165 4.165 3 Si 0.784 3.216 4 H -0.198 1.198 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.600 4.600 8 H 0.069 0.931 9 C 0.208 3.792 10 O -0.401 6.401 11 C -0.145 4.145 12 C -0.089 4.089 13 N -0.181 5.181 14 C 0.085 3.915 15 N -0.217 5.217 16 C 0.028 3.972 17 C -0.115 4.115 18 C -0.067 4.067 19 C -0.112 4.112 20 C -0.108 4.108 21 N -0.013 5.013 22 C -0.290 4.290 23 N 0.587 4.413 24 O -0.343 6.343 25 O -0.357 6.357 26 C -0.074 4.074 27 H 0.082 0.918 28 H 0.229 0.771 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.064 0.936 33 H 0.208 0.792 34 H 0.228 0.772 35 H 0.229 0.771 36 H 0.186 0.814 37 H 0.076 0.924 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.400 -21.381 -9.486 26.021 hybrid contribution 0.956 3.240 -0.772 3.466 sum 12.356 -18.140 -10.258 24.227 Atomic orbital electron populations 1.69765 1.06696 1.28451 1.49729 1.25630 0.95857 1.02136 0.92916 0.85482 0.78917 0.79109 0.78042 1.19797 1.19912 1.19965 1.21816 0.93345 0.91670 1.53197 0.93051 1.19295 0.86786 0.90522 0.82646 1.86123 1.53186 1.54294 1.46533 1.22672 0.99208 0.94379 0.98275 1.23416 0.98984 0.94353 0.92112 1.62623 1.24356 1.14409 1.16685 1.19434 0.88270 0.91766 0.92006 1.70816 1.22085 1.04096 1.24741 1.21853 0.88561 0.91383 0.95393 1.21003 0.99628 0.89205 1.01709 1.21976 0.90757 1.02878 0.91090 1.21713 1.02208 0.88151 0.99118 1.22486 0.87420 1.02463 0.98419 1.42313 1.19525 1.04439 1.35045 1.22070 1.05270 0.78264 1.23428 1.42544 0.98463 1.00892 0.99443 1.94518 1.56792 1.70407 1.12583 1.94581 1.29857 1.62359 1.48874 1.23337 0.96443 0.91064 0.96586 0.91796 0.77120 0.92458 0.91922 0.88573 0.93592 0.79204 0.77220 0.77112 0.81407 0.92427 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.79 10.80 21.45 0.23 -49.56 16 2 C 0.04 1.97 5.02 84.65 0.43 2.39 16 3 Si 0.96 44.06 29.54 68.60 2.03 46.09 16 4 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 5 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.56 -32.28 8.07 25.60 0.21 -32.07 16 8 H 0.05 3.02 7.58 -2.91 -0.02 3.00 16 9 C 0.25 13.49 1.06 -10.64 -0.01 13.48 16 10 O -0.59 -33.59 12.95 -148.98 -1.93 -35.52 16 11 C -0.11 -5.40 5.56 31.49 0.18 -5.22 16 12 C 0.04 1.68 6.38 86.45 0.55 2.24 16 13 N -0.46 -21.33 5.50 -688.87 -3.79 -25.12 16 14 C 0.32 13.24 6.15 131.50 0.81 14.05 16 15 N -0.50 -18.29 11.33 -191.26 -2.17 -20.46 16 16 C 0.27 7.29 7.80 134.05 1.05 8.33 16 17 C -0.10 -1.27 10.11 22.41 0.23 -1.05 16 18 C -0.04 -0.19 10.07 22.30 0.22 0.03 16 19 C -0.09 -0.57 9.99 22.06 0.22 -0.35 16 20 C 0.01 0.25 10.95 83.24 0.91 1.16 16 21 N -0.34 -9.50 2.95 -340.41 -1.00 -10.51 16 22 C -0.10 -3.63 6.86 127.26 0.87 -2.75 16 23 N 0.06 2.25 3.28 -48.02 -0.16 2.09 16 24 O -0.12 -4.73 17.38 18.87 0.33 -4.40 16 25 O -0.14 -5.92 17.22 18.89 0.33 -5.59 16 26 C 0.05 2.64 5.64 86.45 0.49 3.13 16 27 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 28 H 0.38 21.37 7.28 -74.05 -0.54 20.83 16 29 H 0.06 2.91 7.98 -2.38 -0.02 2.89 16 30 H 0.06 3.36 7.25 -2.39 -0.02 3.35 16 31 H 0.10 3.91 8.14 -2.39 -0.02 3.89 16 32 H 0.05 2.07 4.96 -2.39 -0.01 2.06 16 33 H 0.19 1.55 8.06 -2.91 -0.02 1.53 16 34 H 0.21 -1.20 8.06 -2.91 -0.02 -1.22 16 35 H 0.21 -0.71 8.06 -2.91 -0.02 -0.73 16 36 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 37 H 0.06 2.95 4.04 -2.38 -0.01 2.94 16 38 H 0.07 3.68 8.08 -2.39 -0.02 3.66 16 Total: -1.00 -77.04 321.76 0.61 -76.43 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: 0.60 Total: 23.19 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 6.14 Total: 3.36 kcal Atomic # 7 Polarization: -96.67 SS G_CDS: -6.89 Total: -103.56 kcal Atomic # 8 Polarization: -44.24 SS G_CDS: -1.28 Total: -45.51 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -77.04 0.61 -76.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826614156.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.208 kcal (2) G-P(sol) polarization free energy of solvation -77.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds