Wall clock time and date at job start Tue Mar 31 2020 12:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99412 * 2 1 4 4 H 1.48501 * 109.46845 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47204 * 299.99512 * 3 2 1 6 6 H 1.48491 * 109.47687 * 59.99742 * 3 2 1 7 7 C 1.37877 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99435 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00353 * 0.02562 * 7 2 1 10 10 O 1.42899 * 110.87375 * 62.38653 * 9 7 2 11 11 C 1.55136 * 110.98700 * 298.54664 * 9 7 2 12 12 C 1.54321 * 103.01497 * 206.21645 * 11 9 7 13 13 N 1.47440 * 107.23477 * 22.28190 * 12 11 9 14 14 C 1.40079 * 110.99873 * 123.25530 * 13 12 11 15 15 N 1.33755 * 125.76108 * 239.87173 * 14 13 12 16 16 C 1.32708 * 109.20655 * 180.02562 * 15 14 13 17 17 C 1.40844 * 132.19070 * 179.71955 * 16 15 14 18 18 C 1.36114 * 119.33808 * 179.83925 * 17 16 15 19 19 C 1.40399 * 119.67807 * 0.47122 * 18 17 16 20 20 C 1.35024 * 120.27033 * 359.74606 * 19 18 17 21 21 N 1.36403 * 120.62067 * 0.02562 * 20 19 18 22 22 C 1.35771 * 125.75644 * 59.88104 * 14 13 12 23 23 N 1.48590 * 126.46516 * 359.97438 * 22 14 13 24 24 O 1.21798 * 120.00194 * 270.03022 * 23 22 14 25 25 O 1.21800 * 119.99795 * 90.02521 * 23 22 14 26 26 C 1.47845 * 108.56652 * 0.99066 * 13 12 11 27 27 H 0.96991 * 120.00280 * 0.02562 * 1 2 3 28 28 H 0.96693 * 114.00385 * 297.61342 * 10 9 7 29 29 H 1.08991 * 110.71003 * 87.83492 * 11 9 7 30 30 H 1.09004 * 110.85637 * 324.66736 * 11 9 7 31 31 H 1.08998 * 109.89006 * 262.87874 * 12 11 9 32 32 H 1.09005 * 110.02447 * 141.76051 * 12 11 9 33 33 H 1.07998 * 120.33491 * 0.28525 * 17 16 15 34 34 H 1.08005 * 120.15623 * 180.20860 * 18 17 16 35 35 H 1.07999 * 119.86180 * 179.76619 * 19 18 17 36 36 H 1.08001 * 119.68643 * 180.02562 * 20 19 18 37 37 H 1.09002 * 110.37352 * 94.72928 * 26 13 12 38 38 H 1.09000 * 110.37461 * 217.07397 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3965 1.2123 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 0.4611 -2.6310 -1.1829 11 6 0.3734 -2.6341 1.2726 12 6 0.2524 -4.1622 1.4509 13 7 1.3907 -4.7761 0.7429 14 6 2.1472 -5.5769 1.6082 15 7 3.4415 -5.4069 1.8993 16 6 3.8248 -6.3494 2.7514 17 6 5.0636 -6.6256 3.3619 18 6 5.1658 -7.6808 4.2156 19 6 4.0413 -8.4828 4.4674 20 6 2.8617 -8.2075 3.8707 21 7 2.7450 -7.1502 3.0168 22 6 1.6902 -6.6567 2.2927 23 7 0.3081 -7.2013 2.2626 24 8 -0.5221 -6.8001 3.0584 25 8 0.0052 -8.0489 1.4420 26 6 2.2180 -3.6990 0.1588 27 1 -0.4850 0.8399 -0.0004 28 1 -0.2245 -1.9554 -1.2754 29 1 -0.6073 -2.1859 1.1135 30 1 0.8665 -2.1834 2.1339 31 1 -0.6852 -4.5128 1.0196 32 1 0.2923 -4.4187 2.5096 33 1 5.9221 -6.0021 3.1604 34 1 6.1086 -7.9026 4.6937 35 1 4.1200 -9.3230 5.1413 36 1 2.0025 -8.8304 4.0715 37 1 3.0357 -3.4412 0.8318 38 1 2.6069 -4.0037 -0.8129 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826614157.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:34 Heat of formation + Delta-G solvation = 66.739615 kcal Electronic energy + Delta-G solvation = -27105.220652 eV Core-core repulsion = 23146.395629 eV Total energy + Delta-G solvation = -3958.825022 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.47747 -41.78606 -39.15705 -37.41760 -36.51289 -34.80591 -34.09509 -32.19910 -30.99654 -30.14358 -28.83587 -28.26255 -26.19770 -25.01194 -23.65194 -22.90475 -22.11571 -20.37673 -19.74263 -19.66960 -18.84819 -17.69186 -17.42255 -16.95191 -16.62415 -16.47924 -16.15403 -15.32067 -15.06143 -14.94994 -14.85540 -14.04643 -13.15359 -12.87883 -12.69072 -12.64595 -12.48459 -11.89554 -11.82462 -11.67520 -11.52480 -11.41600 -11.37587 -11.20660 -11.11993 -10.90500 -10.64101 -10.46098 -10.43199 -10.12467 -9.55572 -9.34870 -8.67049 -8.53790 -8.21170 -8.02217 -6.26784 -4.34897 0.26393 0.39587 0.57061 0.94137 2.20860 2.27721 3.04049 3.19424 3.28272 3.32655 3.54506 3.76783 4.19454 4.27641 4.29967 4.47536 4.59418 4.93352 5.01889 5.12030 5.30712 5.47217 5.57432 5.66208 5.73185 5.74638 5.85495 6.01927 6.08960 6.28640 6.40615 6.50833 6.71907 6.86191 6.91704 7.28858 7.30460 7.38073 7.48314 7.60086 7.75347 8.05145 8.67954 9.32897 9.42708 10.80849 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.017649 B = 0.004157 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.131949 B = 6734.584471 C = 7816.218915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.072 3.928 3 Si 0.902 3.098 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.534 4.534 8 H 0.065 0.935 9 C 0.252 3.748 10 O -0.579 6.579 11 C -0.139 4.139 12 C 0.041 3.959 13 N -0.450 5.450 14 C 0.352 3.648 15 N -0.496 5.496 16 C 0.289 3.711 17 C -0.085 4.085 18 C -0.080 4.080 19 C -0.138 4.138 20 C 0.060 3.940 21 N -0.338 5.338 22 C -0.075 4.075 23 N 0.061 4.939 24 O -0.128 6.128 25 O -0.118 6.118 26 C 0.062 3.938 27 H 0.267 0.733 28 H 0.380 0.620 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.052 0.948 33 H 0.165 0.835 34 H 0.152 0.848 35 H 0.159 0.841 36 H 0.161 0.839 37 H 0.084 0.916 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.747 -15.287 10.849 20.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.209 1.209 7 C -0.573 4.573 8 H 0.083 0.917 9 C 0.212 3.788 10 O -0.387 6.387 11 C -0.178 4.178 12 C -0.084 4.084 13 N -0.168 5.168 14 C 0.119 3.881 15 N -0.223 5.223 16 C 0.046 3.954 17 C -0.106 4.106 18 C -0.104 4.104 19 C -0.159 4.159 20 C -0.064 4.064 21 N -0.015 5.015 22 C -0.267 4.267 23 N 0.595 4.405 24 O -0.350 6.350 25 O -0.344 6.344 26 C -0.063 4.063 27 H 0.077 0.923 28 H 0.229 0.771 29 H 0.107 0.893 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.182 0.818 34 H 0.170 0.830 35 H 0.177 0.823 36 H 0.179 0.821 37 H 0.102 0.898 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.821 -15.041 9.982 20.092 hybrid contribution -0.660 0.861 0.996 1.473 sum 8.161 -14.180 10.978 19.703 Atomic orbital electron populations 1.69731 1.05965 1.27522 1.50128 1.24999 0.95011 0.99527 0.93497 0.86371 0.80170 0.82791 0.77705 1.19574 1.20716 1.20875 1.21489 0.93719 0.90149 1.51909 0.91672 1.19563 0.86689 0.90695 0.81890 1.86152 1.51470 1.56849 1.44225 1.23301 1.03532 0.89844 1.01148 1.23173 0.91856 0.97735 0.95595 1.61154 1.08600 1.22947 1.24080 1.19323 0.89276 0.91105 0.88370 1.71147 1.10654 1.22780 1.17669 1.20926 0.88360 0.88894 0.97213 1.20433 0.93665 0.99315 0.97138 1.21203 0.99449 0.93438 0.96336 1.20865 0.91029 1.02190 1.01834 1.21755 1.01316 0.89996 0.93314 1.42097 1.08863 1.21330 1.29227 1.20335 0.81720 1.06657 1.17968 1.42202 1.00397 0.98691 0.99198 1.94564 1.43951 1.61444 1.35065 1.94564 1.84393 1.23268 1.32127 1.23229 0.95485 0.88281 0.99329 0.92271 0.77051 0.89297 0.91815 0.90115 0.92986 0.81784 0.83011 0.82319 0.82125 0.89766 0.90063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.57 10.75 55.43 0.60 -22.97 16 2 C 0.07 1.89 5.29 -17.82 -0.09 1.80 16 3 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.53 -14.26 8.27 -34.44 -0.28 -14.55 16 8 H 0.07 1.74 7.79 -52.48 -0.41 1.33 16 9 C 0.25 6.32 0.87 -89.64 -0.08 6.24 16 10 O -0.58 -15.16 13.16 -35.23 -0.46 -15.62 16 11 C -0.14 -3.26 5.37 -24.91 -0.13 -3.39 16 12 C 0.04 0.87 6.26 -2.84 -0.02 0.85 16 13 N -0.45 -9.75 5.29 -170.30 -0.90 -10.65 16 14 C 0.35 6.96 6.15 -154.01 -0.95 6.02 16 15 N -0.50 -9.12 9.80 -11.81 -0.12 -9.23 16 16 C 0.29 4.20 7.80 -155.99 -1.22 2.99 16 17 C -0.08 -0.81 10.11 -39.36 -0.40 -1.20 16 18 C -0.08 -0.50 10.07 -39.53 -0.40 -0.90 16 19 C -0.14 -0.88 9.99 -39.91 -0.40 -1.28 16 20 C 0.06 0.59 10.95 -16.66 -0.18 0.41 16 21 N -0.34 -4.87 2.95 -58.95 -0.17 -5.04 16 22 C -0.08 -1.34 7.19 -141.87 -1.02 -2.36 16 23 N 0.06 1.08 4.15 33.47 0.14 1.22 16 24 O -0.13 -2.26 18.54 -29.46 -0.55 -2.81 16 25 O -0.12 -2.12 19.26 -29.46 -0.57 -2.68 16 26 C 0.06 1.42 5.68 -2.30 -0.01 1.41 16 27 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 28 H 0.38 9.91 7.56 45.56 0.34 10.25 16 29 H 0.09 2.16 7.53 -51.93 -0.39 1.77 16 30 H 0.06 1.52 8.04 -51.93 -0.42 1.10 16 31 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 32 H 0.05 1.06 6.69 -51.93 -0.35 0.71 16 33 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.15 0.40 8.06 -52.48 -0.42 -0.03 16 35 H 0.16 0.43 8.06 -52.49 -0.42 0.01 16 36 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.08 1.93 6.77 -51.93 -0.35 1.58 16 38 H 0.08 1.90 8.14 -51.93 -0.42 1.47 16 LS Contribution 329.94 15.07 4.97 4.97 Total: -1.00 -30.93 329.94 -10.51 -41.44 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -3.24 Total: 9.85 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -5.18 Total: -3.96 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: -0.46 Total: -46.68 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -1.58 Total: -21.11 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.93 -10.51 -41.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826614157.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.175 kcal (2) G-P(sol) polarization free energy of solvation -30.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds