Wall clock time and date at job start Tue Mar 31 2020 12:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99412 * 2 1 4 4 H 1.48501 * 109.46845 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47204 * 299.99512 * 3 2 1 6 6 H 1.48491 * 109.47687 * 59.99742 * 3 2 1 7 7 C 1.37877 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99435 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00353 * 0.02562 * 7 2 1 10 10 O 1.42899 * 110.87375 * 62.38653 * 9 7 2 11 11 C 1.55136 * 110.98700 * 298.54664 * 9 7 2 12 12 C 1.54321 * 103.01497 * 206.21645 * 11 9 7 13 13 N 1.47440 * 107.23477 * 22.28190 * 12 11 9 14 14 C 1.40079 * 110.99873 * 123.25530 * 13 12 11 15 15 N 1.33755 * 125.76108 * 239.87173 * 14 13 12 16 16 C 1.32708 * 109.20655 * 180.02562 * 15 14 13 17 17 C 1.40844 * 132.19070 * 179.71955 * 16 15 14 18 18 C 1.36114 * 119.33808 * 179.83925 * 17 16 15 19 19 C 1.40399 * 119.67807 * 0.47122 * 18 17 16 20 20 C 1.35024 * 120.27033 * 359.74606 * 19 18 17 21 21 N 1.36403 * 120.62067 * 0.02562 * 20 19 18 22 22 C 1.35771 * 125.75644 * 59.88104 * 14 13 12 23 23 N 1.48590 * 126.46516 * 359.97438 * 22 14 13 24 24 O 1.21798 * 120.00194 * 270.03022 * 23 22 14 25 25 O 1.21800 * 119.99795 * 90.02521 * 23 22 14 26 26 C 1.47845 * 108.56652 * 0.99066 * 13 12 11 27 27 H 0.96991 * 120.00280 * 0.02562 * 1 2 3 28 28 H 0.96693 * 114.00385 * 297.61342 * 10 9 7 29 29 H 1.08991 * 110.71003 * 87.83492 * 11 9 7 30 30 H 1.09004 * 110.85637 * 324.66736 * 11 9 7 31 31 H 1.08998 * 109.89006 * 262.87874 * 12 11 9 32 32 H 1.09005 * 110.02447 * 141.76051 * 12 11 9 33 33 H 1.07998 * 120.33491 * 0.28525 * 17 16 15 34 34 H 1.08005 * 120.15623 * 180.20860 * 18 17 16 35 35 H 1.07999 * 119.86180 * 179.76619 * 19 18 17 36 36 H 1.08001 * 119.68643 * 180.02562 * 20 19 18 37 37 H 1.09002 * 110.37352 * 94.72928 * 26 13 12 38 38 H 1.09000 * 110.37461 * 217.07397 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3965 1.2123 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 0.4611 -2.6310 -1.1829 11 6 0.3734 -2.6341 1.2726 12 6 0.2524 -4.1622 1.4509 13 7 1.3907 -4.7761 0.7429 14 6 2.1472 -5.5769 1.6082 15 7 3.4415 -5.4069 1.8993 16 6 3.8248 -6.3494 2.7514 17 6 5.0636 -6.6256 3.3619 18 6 5.1658 -7.6808 4.2156 19 6 4.0413 -8.4828 4.4674 20 6 2.8617 -8.2075 3.8707 21 7 2.7450 -7.1502 3.0168 22 6 1.6902 -6.6567 2.2927 23 7 0.3081 -7.2013 2.2626 24 8 -0.5221 -6.8001 3.0584 25 8 0.0052 -8.0489 1.4420 26 6 2.2180 -3.6990 0.1588 27 1 -0.4850 0.8399 -0.0004 28 1 -0.2245 -1.9554 -1.2754 29 1 -0.6073 -2.1859 1.1135 30 1 0.8665 -2.1834 2.1339 31 1 -0.6852 -4.5128 1.0196 32 1 0.2923 -4.4187 2.5096 33 1 5.9221 -6.0021 3.1604 34 1 6.1086 -7.9026 4.6937 35 1 4.1200 -9.3230 5.1413 36 1 2.0025 -8.8304 4.0715 37 1 3.0357 -3.4412 0.8318 38 1 2.6069 -4.0037 -0.8129 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826614157.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:32 Heat of formation + Delta-G solvation = 47.089306 kcal Electronic energy + Delta-G solvation = -27106.072753 eV Core-core repulsion = 23146.395629 eV Total energy + Delta-G solvation = -3959.677123 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -44.58917 -43.12096 -40.70635 -38.60813 -37.90028 -36.50831 -35.11175 -34.25246 -32.38605 -31.21593 -30.31808 -30.05609 -27.43206 -26.78198 -24.67243 -24.02880 -23.53249 -21.95195 -21.54518 -20.83405 -20.23436 -19.25920 -18.88495 -18.15858 -17.81017 -17.69634 -17.29000 -16.97518 -16.69495 -16.13505 -15.91754 -15.85204 -14.68899 -14.68119 -14.22158 -13.82949 -13.46655 -13.32892 -13.27720 -13.14603 -13.06055 -13.03921 -12.74456 -12.63076 -12.57017 -12.46403 -12.40423 -12.26493 -12.06860 -11.72689 -11.29542 -10.89091 -10.67638 -10.23334 -9.51992 -9.46385 -8.27046 -6.43184 -0.94811 -0.50415 -0.38936 -0.34749 1.06694 1.23080 1.38883 1.42058 1.53266 2.19980 2.28242 2.38643 2.75750 2.97787 3.24819 3.34696 3.62244 3.68520 3.82616 3.94630 3.95534 4.02890 4.17824 4.37738 4.43624 4.55809 4.59915 4.77632 4.89127 4.89584 4.97274 5.01590 5.16158 5.29270 5.34303 5.38446 5.57513 5.70818 5.77670 6.02286 6.21926 6.24554 6.61269 7.27121 7.35596 8.79645 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.017649 B = 0.004157 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.131949 B = 6734.584471 C = 7816.218915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.034 3.966 3 Si 0.964 3.036 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.561 4.561 8 H 0.057 0.943 9 C 0.240 3.760 10 O -0.587 6.587 11 C -0.126 4.126 12 C 0.055 3.945 13 N -0.463 5.463 14 C 0.323 3.677 15 N -0.539 5.539 16 C 0.280 3.720 17 C -0.106 4.106 18 C -0.041 4.041 19 C -0.102 4.102 20 C 0.024 3.976 21 N -0.338 5.338 22 C -0.094 4.094 23 N 0.065 4.935 24 O -0.131 6.131 25 O -0.131 6.131 26 C 0.077 3.923 27 H 0.271 0.729 28 H 0.376 0.624 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.183 0.817 34 H 0.207 0.793 35 H 0.212 0.788 36 H 0.173 0.827 37 H 0.079 0.921 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.346 -17.132 13.529 24.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.167 4.167 3 Si 0.789 3.211 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.599 4.599 8 H 0.075 0.925 9 C 0.200 3.800 10 O -0.395 6.395 11 C -0.166 4.166 12 C -0.070 4.070 13 N -0.181 5.181 14 C 0.090 3.910 15 N -0.265 5.265 16 C 0.038 3.962 17 C -0.126 4.126 18 C -0.065 4.065 19 C -0.122 4.122 20 C -0.099 4.099 21 N -0.014 5.014 22 C -0.286 4.286 23 N 0.598 4.402 24 O -0.354 6.354 25 O -0.355 6.355 26 C -0.049 4.049 27 H 0.081 0.919 28 H 0.226 0.774 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.200 0.800 34 H 0.224 0.776 35 H 0.228 0.772 36 H 0.190 0.810 37 H 0.097 0.903 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.433 -16.948 12.682 24.058 hybrid contribution -1.270 1.222 0.386 1.804 sum 10.162 -15.726 13.068 22.833 Atomic orbital electron populations 1.69809 1.06852 1.28401 1.49727 1.25693 0.95870 1.02313 0.92867 0.85413 0.78880 0.78906 0.77863 1.19516 1.20237 1.20185 1.21683 0.93562 0.91443 1.53203 0.92504 1.19725 0.87153 0.91216 0.81933 1.86143 1.51520 1.56738 1.45109 1.23056 1.02172 0.91385 0.99940 1.22960 0.92080 0.96022 0.95919 1.61061 1.08776 1.22484 1.25779 1.19214 0.90201 0.91730 0.89877 1.71004 1.10085 1.25382 1.20043 1.21646 0.89806 0.88128 0.96605 1.20936 0.92175 1.01356 0.98151 1.21934 1.01286 0.90341 0.92960 1.21655 0.89073 1.02057 0.99409 1.22476 1.03789 0.89697 0.93889 1.42214 1.07503 1.22280 1.29423 1.20165 0.82057 1.07080 1.19251 1.42236 1.00673 0.98408 0.98881 1.94539 1.44328 1.61416 1.35108 1.94545 1.84663 1.23848 1.32424 1.22923 0.95067 0.88150 0.98735 0.91928 0.77449 0.90632 0.92934 0.90431 0.92436 0.79955 0.77623 0.77166 0.80975 0.90266 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.84 10.75 21.45 0.23 -48.61 16 2 C 0.03 1.80 5.29 84.65 0.45 2.25 16 3 Si 0.96 42.45 29.54 68.60 2.03 44.48 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 6 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.56 -30.98 8.27 25.60 0.21 -30.77 16 8 H 0.06 3.15 7.79 -2.91 -0.02 3.12 16 9 C 0.24 12.60 0.87 -10.16 -0.01 12.60 16 10 O -0.59 -32.19 13.16 -148.98 -1.96 -34.15 16 11 C -0.13 -6.21 5.37 31.77 0.17 -6.04 16 12 C 0.06 2.47 6.26 86.65 0.54 3.01 16 13 N -0.46 -21.12 5.29 -692.71 -3.66 -24.78 16 14 C 0.32 13.33 6.15 131.50 0.81 14.14 16 15 N -0.54 -20.41 9.80 -191.27 -1.88 -22.29 16 16 C 0.28 7.90 7.80 134.05 1.05 8.94 16 17 C -0.11 -1.64 10.11 22.41 0.23 -1.41 16 18 C -0.04 -0.25 10.07 22.30 0.22 -0.03 16 19 C -0.10 -0.67 9.99 22.06 0.22 -0.45 16 20 C 0.02 0.40 10.95 83.24 0.91 1.31 16 21 N -0.34 -9.41 2.95 -340.41 -1.00 -10.41 16 22 C -0.09 -3.40 7.19 127.26 0.92 -2.49 16 23 N 0.07 2.37 4.15 -48.02 -0.20 2.17 16 24 O -0.13 -4.71 18.54 18.89 0.35 -4.36 16 25 O -0.13 -4.84 19.26 18.89 0.36 -4.48 16 26 C 0.08 3.75 5.68 86.77 0.49 4.25 16 27 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 28 H 0.38 20.56 7.56 -74.06 -0.56 20.00 16 29 H 0.08 3.85 7.53 -2.39 -0.02 3.83 16 30 H 0.05 2.63 8.04 -2.39 -0.02 2.62 16 31 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 32 H 0.06 2.45 6.69 -2.38 -0.02 2.44 16 33 H 0.18 2.09 8.06 -2.91 -0.02 2.06 16 34 H 0.21 -0.78 8.06 -2.91 -0.02 -0.81 16 35 H 0.21 -0.64 8.06 -2.91 -0.02 -0.67 16 36 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 37 H 0.08 3.87 6.77 -2.39 -0.02 3.85 16 38 H 0.07 3.43 8.14 -2.39 -0.02 3.41 16 Total: -1.00 -72.97 329.94 1.04 -71.92 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: 0.57 Total: 25.21 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 6.21 Total: 5.31 kcal Atomic # 7 Polarization: -97.42 SS G_CDS: -6.51 Total: -103.93 kcal Atomic # 8 Polarization: -41.74 SS G_CDS: -1.25 Total: -42.99 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -72.97 1.04 -71.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826614157.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.009 kcal (2) G-P(sol) polarization free energy of solvation -72.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds