Wall clock time and date at job start Tue Mar 31 2020 11:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 120.00084 * 2 1 4 4 C 1.50700 * 109.46911 * 269.99763 * 3 2 1 5 5 H 1.08007 * 120.00174 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00107 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00123 * 179.97438 * 6 4 3 8 8 Si 1.86801 * 120.00031 * 0.02562 * 6 4 3 9 9 H 1.48492 * 109.47190 * 89.99485 * 8 6 4 10 10 H 1.48494 * 109.47274 * 209.99810 * 8 6 4 11 11 H 1.48498 * 109.46797 * 329.99696 * 8 6 4 12 12 C 1.34777 * 120.00027 * 179.97438 * 2 1 3 13 13 O 1.21598 * 119.99933 * 180.02562 * 12 2 1 14 14 N 1.34777 * 120.00254 * 0.02562 * 12 2 1 15 15 C 1.40136 * 120.00104 * 185.29672 * 14 12 2 16 16 C 1.39425 * 119.92308 * 33.56895 * 15 14 12 17 17 C 1.37679 * 120.68153 * 180.26200 * 16 15 14 18 18 C 1.39039 * 120.09666 * 359.44740 * 17 16 15 19 19 O 1.34828 * 133.05326 * 180.25590 * 18 17 16 20 20 C 1.34949 * 110.85944 * 180.02562 * 19 18 17 21 21 C 1.46802 * 125.14126 * 179.97438 * 20 19 18 22 22 O 1.21574 * 120.00227 * 180.02562 * 21 20 19 23 23 O 1.34861 * 119.99440 * 0.03960 * 21 20 19 24 24 C 1.35909 * 109.72061 * 0.02562 * 20 19 18 25 25 C 1.40710 * 119.36368 * 0.25783 * 18 17 16 26 26 C 1.38173 * 119.92347 * 213.26525 * 15 14 12 27 27 H 1.09002 * 109.47383 * 270.00099 * 1 2 3 28 28 H 1.08999 * 109.47564 * 30.00930 * 1 2 3 29 29 H 1.09002 * 109.47129 * 150.00338 * 1 2 3 30 30 H 1.09003 * 109.47181 * 29.99310 * 3 2 1 31 31 H 1.08994 * 109.47561 * 150.00025 * 3 2 1 32 32 H 0.97002 * 120.00101 * 180.02562 * 7 6 4 33 33 H 0.97000 * 119.99489 * 5.28986 * 14 12 2 34 34 H 1.07994 * 119.66174 * 359.96202 * 16 15 14 35 35 H 1.08008 * 119.95297 * 179.73147 * 17 16 15 36 36 H 0.96704 * 116.99778 * 179.97438 * 23 21 20 37 37 H 1.07991 * 126.95698 * 179.97438 * 24 20 19 38 38 H 1.07998 * 120.22951 * 359.97438 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0960 -2.2418 6 6 3.1260 2.8779 -1.6729 7 7 3.3457 3.2572 -2.9128 8 14 3.7330 3.9292 -0.2531 9 1 5.1064 3.5081 0.1229 10 1 3.7478 5.3559 -0.6646 11 1 2.8270 3.7593 0.9112 12 6 2.1388 -1.1672 0.0005 13 8 3.3548 -1.1672 0.0010 14 7 1.4650 -2.3344 0.0005 15 6 2.1612 -3.5454 0.1131 16 6 3.3231 -3.6109 0.8809 17 6 4.0223 -4.7912 0.9979 18 6 3.5669 -5.9378 0.3568 19 8 4.0284 -7.2032 0.2960 20 6 3.2247 -7.9715 -0.4687 21 6 3.4338 -9.3977 -0.7467 22 8 2.6483 -10.0013 -1.4515 23 8 4.4973 -10.0384 -0.2200 24 6 2.1929 -7.2252 -0.9436 25 6 2.3913 -5.8766 -0.4139 26 6 1.6911 -4.6733 -0.5320 27 1 -0.3634 0.0000 1.0277 28 1 -0.3634 0.8899 -0.5140 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6083 2.0284 0.5137 31 1 3.1499 1.1384 0.5138 32 1 3.8225 4.0831 -3.0901 33 1 0.4981 -2.3362 -0.0773 34 1 3.6810 -2.7256 1.3853 35 1 4.9234 -4.8275 1.5923 36 1 4.5928 -10.9773 -0.4309 37 1 1.3891 -7.5603 -1.5821 38 1 0.7883 -4.6252 -1.1228 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830722456.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:57 Heat of formation + Delta-G solvation = -63.687219 kcal Electronic energy + Delta-G solvation = -25210.149143 eV Core-core repulsion = 21213.375638 eV Total energy + Delta-G solvation = -3996.773505 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.71031 -40.44029 -40.14559 -37.86470 -36.63509 -35.12924 -34.32299 -33.08163 -32.51135 -30.07719 -29.60415 -28.22002 -26.09902 -25.33649 -23.37827 -22.44867 -21.86615 -21.20034 -19.80216 -18.76995 -18.11792 -17.87317 -17.46941 -17.02809 -16.83092 -16.77496 -15.56194 -15.34630 -15.05104 -14.61930 -14.21534 -14.05845 -13.96806 -13.55223 -13.45018 -13.30292 -13.02804 -12.90035 -12.45309 -12.37556 -12.13600 -12.08633 -11.56137 -11.43840 -11.27338 -11.02982 -10.58235 -10.50596 -10.27352 -10.06741 -9.65382 -9.50179 -8.62969 -8.53821 -8.10704 -7.73035 -6.12426 -4.11929 0.15603 1.17360 1.48225 1.97432 2.51292 2.73078 2.98614 3.26551 3.32189 3.34486 3.37358 3.81113 4.21769 4.32861 4.35750 4.40970 4.70979 4.84867 4.97275 5.18996 5.23355 5.26043 5.36173 5.59174 5.68200 5.74250 5.79271 5.88689 5.97991 6.04936 6.15266 6.30123 6.48506 6.63268 6.78547 6.97012 7.12225 7.34876 7.35742 7.55585 8.30180 8.42210 8.89708 8.99513 9.46970 11.00943 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.027943 B = 0.002438 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.788576 B =11480.924853 C =11698.435931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.605 5.605 3 C 0.230 3.770 4 C -0.532 4.532 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.896 5.896 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.700 3.300 13 O -0.567 6.567 14 N -0.693 5.693 15 C 0.174 3.826 16 C -0.070 4.070 17 C -0.093 4.093 18 C 0.058 3.942 19 O -0.174 6.174 20 C -0.025 4.025 21 C 0.572 3.428 22 O -0.493 6.493 23 O -0.501 6.501 24 C -0.087 4.087 25 C -0.129 4.129 26 C -0.101 4.101 27 H 0.048 0.952 28 H 0.082 0.918 29 H 0.053 0.947 30 H 0.033 0.967 31 H 0.039 0.961 32 H 0.265 0.735 33 H 0.405 0.595 34 H 0.156 0.844 35 H 0.140 0.860 36 H 0.420 0.580 37 H 0.173 0.827 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.071 -21.382 8.774 23.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.340 5.340 3 C 0.109 3.891 4 C -0.570 4.570 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.534 5.534 8 Si 0.704 3.296 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.190 1.190 12 C 0.402 3.598 13 O -0.443 6.443 14 N -0.343 5.343 15 C 0.077 3.923 16 C -0.090 4.090 17 C -0.112 4.112 18 C 0.010 3.990 19 O -0.075 6.075 20 C -0.074 4.074 21 C 0.416 3.584 22 O -0.382 6.382 23 O -0.313 6.313 24 C -0.107 4.107 25 C -0.131 4.131 26 C -0.123 4.123 27 H 0.067 0.933 28 H 0.101 0.899 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.242 0.758 34 H 0.174 0.826 35 H 0.158 0.842 36 H 0.279 0.721 37 H 0.190 0.810 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.131 -20.911 8.716 23.028 hybrid contribution -0.233 0.077 0.116 0.271 sum -4.364 -20.834 8.832 23.046 Atomic orbital electron populations 1.21645 0.80997 1.02911 1.00608 1.47151 1.05939 1.05692 1.75213 1.19646 0.92283 0.78666 0.98463 1.21333 1.37243 1.07197 0.91271 0.90789 1.24859 0.95200 0.97348 0.95615 1.69894 1.41292 1.23561 1.18694 0.86841 0.80172 0.79784 0.82812 1.19840 1.21057 1.19044 1.15850 0.85510 0.80021 0.78420 1.90917 1.11228 1.85506 1.56604 1.42950 1.10176 1.03396 1.77812 1.17289 0.94130 0.84988 0.95886 1.21230 0.93898 0.97385 0.96455 1.19852 1.01711 0.87911 1.01761 1.19730 0.94545 0.83970 1.00770 1.84096 1.46593 1.18210 1.58652 1.20327 0.95007 0.89658 1.02363 1.18975 0.78517 0.84619 0.76328 1.91010 1.45227 1.65899 1.36074 1.84682 1.45698 1.30736 1.70152 1.22743 0.98037 0.90547 0.99406 1.19434 0.97381 0.93834 1.02442 1.20140 1.01782 0.90096 1.00266 0.93325 0.89946 0.92810 0.94871 0.94279 0.92498 0.75778 0.82648 0.84204 0.72105 0.80962 0.84676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.13 10.25 59.84 0.61 1.74 16 2 N -0.61 -11.71 2.86 -188.74 -0.54 -12.24 16 3 C 0.23 5.37 4.23 -5.19 -0.02 5.35 16 4 C -0.53 -14.89 9.94 -34.44 -0.34 -15.24 16 5 H 0.07 2.29 8.06 -52.48 -0.42 1.87 16 6 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 7 N -0.90 -27.29 13.96 55.43 0.77 -26.52 16 8 Si 0.88 21.01 27.47 -169.99 -4.67 16.34 16 9 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 12 C 0.70 13.57 8.01 -86.92 -0.70 12.88 16 13 O -0.57 -13.22 13.61 5.28 0.07 -13.15 16 14 N -0.69 -9.96 5.22 -14.20 -0.07 -10.04 16 15 C 0.17 2.42 6.27 -83.64 -0.52 1.89 16 16 C -0.07 -0.99 8.63 -39.34 -0.34 -1.33 16 17 C -0.09 -1.17 10.05 -39.49 -0.40 -1.57 16 18 C 0.06 0.76 7.40 -38.35 -0.28 0.48 16 19 O -0.17 -2.22 10.60 1.65 0.02 -2.20 16 20 C -0.03 -0.29 7.10 -36.96 -0.26 -0.55 16 21 C 0.57 5.74 8.31 34.19 0.28 6.02 16 22 O -0.49 -5.73 17.61 -19.32 -0.34 -6.07 16 23 O -0.50 -3.73 13.44 -42.78 -0.58 -4.30 16 24 C -0.09 -0.94 10.81 -37.21 -0.40 -1.34 16 25 C -0.13 -1.58 6.38 -105.20 -0.67 -2.26 16 26 C -0.10 -1.20 10.01 -39.05 -0.39 -1.59 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 29 H 0.05 0.58 6.29 -51.93 -0.33 0.25 16 30 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 31 H 0.04 0.97 6.85 -51.93 -0.36 0.62 16 32 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.40 4.40 6.51 -40.82 -0.27 4.14 16 34 H 0.16 2.42 6.41 -52.49 -0.34 2.08 16 35 H 0.14 1.44 8.06 -52.48 -0.42 1.02 16 36 H 0.42 0.84 9.11 45.56 0.42 1.26 16 37 H 0.17 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 337.44 15.07 5.09 5.09 Total: -1.00 -36.45 337.44 -6.72 -43.17 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -2.94 Total: 3.46 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: -3.53 Total: 6.46 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: 0.16 Total: -48.80 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.83 Total: -25.72 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.34 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -36.45 -6.72 -43.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830722456.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.514 kcal (2) G-P(sol) polarization free energy of solvation -36.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds