Wall clock time and date at job start Tue Mar 31 2020 11:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 120.00084 * 2 1 4 4 C 1.50700 * 109.46911 * 269.99763 * 3 2 1 5 5 H 1.08007 * 120.00174 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00107 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00123 * 179.97438 * 6 4 3 8 8 Si 1.86801 * 120.00031 * 0.02562 * 6 4 3 9 9 H 1.48492 * 109.47190 * 89.99485 * 8 6 4 10 10 H 1.48494 * 109.47274 * 209.99810 * 8 6 4 11 11 H 1.48498 * 109.46797 * 329.99696 * 8 6 4 12 12 C 1.34777 * 120.00027 * 179.97438 * 2 1 3 13 13 O 1.21598 * 119.99933 * 180.02562 * 12 2 1 14 14 N 1.34777 * 120.00254 * 0.02562 * 12 2 1 15 15 C 1.40136 * 120.00104 * 185.29672 * 14 12 2 16 16 C 1.39425 * 119.92308 * 33.56895 * 15 14 12 17 17 C 1.37679 * 120.68153 * 180.26200 * 16 15 14 18 18 C 1.39039 * 120.09666 * 359.44740 * 17 16 15 19 19 O 1.34828 * 133.05326 * 180.25590 * 18 17 16 20 20 C 1.34949 * 110.85944 * 180.02562 * 19 18 17 21 21 C 1.46802 * 125.14126 * 179.97438 * 20 19 18 22 22 O 1.21574 * 120.00227 * 180.02562 * 21 20 19 23 23 O 1.34861 * 119.99440 * 0.03960 * 21 20 19 24 24 C 1.35909 * 109.72061 * 0.02562 * 20 19 18 25 25 C 1.40710 * 119.36368 * 0.25783 * 18 17 16 26 26 C 1.38173 * 119.92347 * 213.26525 * 15 14 12 27 27 H 1.09002 * 109.47383 * 270.00099 * 1 2 3 28 28 H 1.08999 * 109.47564 * 30.00930 * 1 2 3 29 29 H 1.09002 * 109.47129 * 150.00338 * 1 2 3 30 30 H 1.09003 * 109.47181 * 29.99310 * 3 2 1 31 31 H 1.08994 * 109.47561 * 150.00025 * 3 2 1 32 32 H 0.97002 * 120.00101 * 180.02562 * 7 6 4 33 33 H 0.97000 * 119.99489 * 5.28986 * 14 12 2 34 34 H 1.07994 * 119.66174 * 359.96202 * 16 15 14 35 35 H 1.08008 * 119.95297 * 179.73147 * 17 16 15 36 36 H 0.96704 * 116.99778 * 179.97438 * 23 21 20 37 37 H 1.07991 * 126.95698 * 179.97438 * 24 20 19 38 38 H 1.07998 * 120.22951 * 359.97438 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0960 -2.2418 6 6 3.1260 2.8779 -1.6729 7 7 3.3457 3.2572 -2.9128 8 14 3.7330 3.9292 -0.2531 9 1 5.1064 3.5081 0.1229 10 1 3.7478 5.3559 -0.6646 11 1 2.8270 3.7593 0.9112 12 6 2.1388 -1.1672 0.0005 13 8 3.3548 -1.1672 0.0010 14 7 1.4650 -2.3344 0.0005 15 6 2.1612 -3.5454 0.1131 16 6 3.3231 -3.6109 0.8809 17 6 4.0223 -4.7912 0.9979 18 6 3.5669 -5.9378 0.3568 19 8 4.0284 -7.2032 0.2960 20 6 3.2247 -7.9715 -0.4687 21 6 3.4338 -9.3977 -0.7467 22 8 2.6483 -10.0013 -1.4515 23 8 4.4973 -10.0384 -0.2200 24 6 2.1929 -7.2252 -0.9436 25 6 2.3913 -5.8766 -0.4139 26 6 1.6911 -4.6733 -0.5320 27 1 -0.3634 0.0000 1.0277 28 1 -0.3634 0.8899 -0.5140 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6083 2.0284 0.5137 31 1 3.1499 1.1384 0.5138 32 1 3.8225 4.0831 -3.0901 33 1 0.4981 -2.3362 -0.0773 34 1 3.6810 -2.7256 1.3853 35 1 4.9234 -4.8275 1.5923 36 1 4.5928 -10.9773 -0.4309 37 1 1.3891 -7.5603 -1.5821 38 1 0.7883 -4.6252 -1.1228 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830722456.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:57 Heat of formation + Delta-G solvation = -90.143247 kcal Electronic energy + Delta-G solvation = -25211.296363 eV Core-core repulsion = 21213.375638 eV Total energy + Delta-G solvation = -3997.920725 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.63955 -41.60937 -41.07714 -39.01893 -37.33453 -36.68227 -35.63314 -34.55576 -33.99850 -31.09583 -30.90181 -29.73415 -27.42633 -26.24476 -24.94729 -23.43620 -23.19959 -22.07696 -21.07665 -19.69695 -19.36367 -19.12670 -18.68687 -18.49542 -17.97353 -17.69788 -16.78252 -16.69189 -16.35263 -15.85628 -15.65378 -15.17511 -14.93568 -14.83216 -14.50683 -14.38238 -14.28700 -14.09462 -13.99632 -13.65584 -13.46974 -13.22253 -12.79781 -12.77657 -12.41323 -12.24098 -12.23422 -12.01972 -11.73121 -11.43698 -11.35285 -11.07079 -10.80504 -9.55097 -9.48343 -8.95930 -8.31466 -6.36694 -0.72690 0.13820 0.57454 1.15151 1.35779 1.40641 1.48129 1.59572 1.69042 2.04669 2.08927 2.33713 2.64761 2.96705 3.04345 3.43385 3.53273 3.83472 3.96732 4.09245 4.21250 4.32027 4.35412 4.62920 4.70085 4.72017 4.79527 4.88585 4.91963 4.96297 5.12284 5.17357 5.23467 5.29569 5.47059 5.55143 5.62684 5.94232 5.96485 6.27767 6.65014 6.77408 6.96993 7.24927 7.55573 8.85601 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.027943 B = 0.002438 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.788576 B =11480.924853 C =11698.435931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.615 5.615 3 C 0.239 3.761 4 C -0.536 4.536 5 H 0.027 0.973 6 C 0.009 3.991 7 N -0.948 5.948 8 Si 0.949 3.051 9 H -0.277 1.277 10 H -0.278 1.278 11 H -0.233 1.233 12 C 0.695 3.305 13 O -0.616 6.616 14 N -0.672 5.672 15 C 0.149 3.851 16 C -0.085 4.085 17 C -0.093 4.093 18 C 0.047 3.953 19 O -0.183 6.183 20 C -0.038 4.038 21 C 0.581 3.419 22 O -0.510 6.510 23 O -0.498 6.498 24 C -0.078 4.078 25 C -0.137 4.137 26 C -0.084 4.084 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.024 0.976 32 H 0.268 0.732 33 H 0.423 0.577 34 H 0.136 0.864 35 H 0.156 0.844 36 H 0.443 0.557 37 H 0.198 0.802 38 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.447 -22.693 10.186 25.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.349 5.349 3 C 0.116 3.884 4 C -0.574 4.574 5 H 0.045 0.955 6 C -0.189 4.189 7 N -0.588 5.588 8 Si 0.772 3.228 9 H -0.203 1.203 10 H -0.203 1.203 11 H -0.156 1.156 12 C 0.397 3.603 13 O -0.496 6.496 14 N -0.324 5.324 15 C 0.053 3.947 16 C -0.105 4.105 17 C -0.112 4.112 18 C -0.002 4.002 19 O -0.085 6.085 20 C -0.085 4.085 21 C 0.425 3.575 22 O -0.401 6.401 23 O -0.313 6.313 24 C -0.097 4.097 25 C -0.139 4.139 26 C -0.105 4.105 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.042 0.958 32 H 0.077 0.923 33 H 0.264 0.736 34 H 0.154 0.846 35 H 0.174 0.826 36 H 0.306 0.694 37 H 0.216 0.784 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -5.577 -22.301 10.147 25.128 hybrid contribution 0.203 0.272 -0.395 0.521 sum -5.374 -22.029 9.752 24.684 Atomic orbital electron populations 1.21972 0.77535 1.04042 1.03171 1.47113 1.08090 1.04458 1.75257 1.19312 0.92751 0.81101 0.95204 1.21592 1.36710 1.06581 0.92559 0.95511 1.25878 0.95359 0.99050 0.98637 1.70058 1.42791 1.24503 1.21433 0.85696 0.79647 0.77562 0.79909 1.20271 1.20348 1.15566 1.16047 0.85090 0.81109 0.78052 1.90879 1.13564 1.86430 1.58706 1.42555 1.10852 1.02067 1.76912 1.17454 0.94699 0.85255 0.97268 1.21132 0.94747 0.97304 0.97352 1.19940 1.02025 0.87454 1.01734 1.19888 0.95071 0.84194 1.01047 1.84083 1.47140 1.18160 1.59159 1.20730 0.95105 0.90438 1.02268 1.18736 0.78685 0.84110 0.75935 1.91009 1.46024 1.66120 1.36987 1.84639 1.44380 1.32724 1.69514 1.23036 0.98306 0.89457 0.98919 1.19679 0.97157 0.94654 1.02372 1.20356 1.02178 0.88943 0.99037 0.89891 0.90874 0.89775 0.92448 0.95819 0.92346 0.73637 0.84589 0.82632 0.69366 0.78447 0.81644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.87 10.25 127.77 1.31 3.18 16 2 N -0.62 -23.36 2.86 -869.31 -2.48 -25.85 16 3 C 0.24 11.08 4.23 85.63 0.36 11.44 16 4 C -0.54 -30.78 9.94 25.60 0.25 -30.53 16 5 H 0.03 1.73 8.06 -2.91 -0.02 1.71 16 6 C 0.01 0.49 5.47 84.66 0.46 0.96 16 7 N -0.95 -59.53 13.96 21.45 0.30 -59.23 16 8 Si 0.95 43.36 27.47 68.60 1.88 45.24 16 9 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.23 -9.32 6.54 99.48 0.65 -8.67 16 12 C 0.70 26.96 8.01 179.05 1.43 28.39 16 13 O -0.62 -29.66 13.61 -4.02 -0.05 -29.71 16 14 N -0.67 -18.53 5.22 -317.11 -1.66 -20.18 16 15 C 0.15 4.02 6.27 38.08 0.24 4.26 16 16 C -0.09 -2.46 8.63 22.42 0.19 -2.27 16 17 C -0.09 -2.33 10.05 22.33 0.22 -2.10 16 18 C 0.05 1.17 7.40 23.07 0.17 1.34 16 19 O -0.18 -4.48 10.60 -13.39 -0.14 -4.62 16 20 C -0.04 -0.80 7.10 23.97 0.17 -0.63 16 21 C 0.58 10.56 8.31 70.06 0.58 11.14 16 22 O -0.51 -10.86 17.61 19.59 0.35 -10.52 16 23 O -0.50 -6.36 13.44 -55.98 -0.75 -7.11 16 24 C -0.08 -1.48 10.81 23.81 0.26 -1.23 16 25 C -0.14 -3.11 6.38 -20.24 -0.13 -3.24 16 26 C -0.08 -1.82 10.01 22.61 0.23 -1.59 16 27 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.07 1.99 8.07 -2.39 -0.02 1.97 16 29 H 0.08 1.56 6.29 -2.39 -0.02 1.54 16 30 H 0.06 2.39 7.13 -2.39 -0.02 2.38 16 31 H 0.02 1.18 6.85 -2.39 -0.02 1.16 16 32 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 33 H 0.42 8.12 6.51 -92.71 -0.60 7.52 16 34 H 0.14 4.46 6.41 -2.91 -0.02 4.44 16 35 H 0.16 3.22 8.06 -2.91 -0.02 3.19 16 36 H 0.44 0.71 9.11 -74.05 -0.67 0.04 16 37 H 0.20 2.66 8.06 -2.91 -0.02 2.63 16 38 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -82.74 337.44 3.01 -79.72 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -0.18 Total: 13.11 kcal Atomic # 6 Polarization: 13.39 SS G_CDS: 5.76 Total: 19.15 kcal Atomic # 7 Polarization: -101.42 SS G_CDS: -3.84 Total: -105.26 kcal Atomic # 8 Polarization: -51.35 SS G_CDS: -0.60 Total: -51.96 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.88 Total: 45.24 kcal Total: -82.74 3.01 -79.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830722456.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.422 kcal (2) G-P(sol) polarization free energy of solvation -82.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds