Wall clock time and date at job start Tue Mar 31 2020 12:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.34250 * 125.79177 * 2 1 4 4 H 0.96998 * 125.39708 * 359.97438 * 3 2 1 5 5 C 1.37822 * 109.20546 * 179.97438 * 3 2 1 6 6 C 1.46635 * 125.85999 * 179.97438 * 5 3 2 7 7 O 1.21598 * 120.00279 * 180.02562 * 6 5 3 8 8 O 1.34878 * 119.99887 * 0.02562 * 6 5 3 9 9 C 1.36453 * 108.28415 * 0.02562 * 5 3 2 10 10 C 1.50698 * 126.49744 * 180.02562 * 9 5 3 11 11 C 1.38243 * 125.79375 * 179.69222 * 2 1 3 12 12 C 1.47392 * 126.45207 * 359.96346 * 11 2 1 13 13 O 1.21641 * 119.99445 * 90.02969 * 12 11 2 14 14 N 1.34770 * 120.00506 * 270.02670 * 12 11 2 15 15 C 1.40563 * 120.00231 * 180.02562 * 14 12 11 16 16 C 1.40654 * 126.08299 * 359.68940 * 15 14 12 17 17 N 1.30907 * 108.39002 * 179.85793 * 16 15 14 18 18 N 1.40069 * 108.40766 * 0.40214 * 17 16 15 19 19 C 1.37316 * 126.06842 * 179.72663 * 18 17 16 20 20 H 1.08003 * 119.99724 * 174.15793 * 19 18 17 21 21 C 1.38990 * 120.00317 * 354.15111 * 19 18 17 22 22 N 1.31289 * 119.99384 * 5.94344 * 21 19 18 23 23 Si 1.86795 * 120.00020 * 185.94269 * 21 19 18 24 24 H 1.48500 * 109.47070 * 94.98149 * 23 21 19 25 25 H 1.48505 * 109.47149 * 214.98218 * 23 21 19 26 26 H 1.48496 * 109.47333 * 334.97962 * 23 21 19 27 27 C 1.35679 * 126.08280 * 179.97438 * 15 14 12 28 28 H 1.09001 * 109.46985 * 90.02359 * 1 2 3 29 29 H 1.09000 * 109.47276 * 330.02345 * 1 2 3 30 30 H 1.09002 * 109.47243 * 210.02362 * 1 2 3 31 31 H 0.96693 * 116.99945 * 179.97438 * 8 6 5 32 32 H 1.08995 * 109.46911 * 90.02367 * 10 9 5 33 33 H 1.08999 * 109.47009 * 210.02307 * 10 9 5 34 34 H 1.08997 * 109.47070 * 330.01916 * 10 9 5 35 35 H 0.97005 * 120.00020 * 359.97438 * 14 12 11 36 36 H 1.08000 * 125.80385 * 359.97438 * 16 15 14 37 37 H 0.97005 * 119.99825 * 179.97438 * 22 21 19 38 38 H 1.08005 * 126.24767 * 359.95447 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2922 1.0890 0.0000 4 1 1.9794 2.0071 -0.0004 5 6 3.6131 0.6955 0.0006 6 6 4.7756 1.5893 0.0002 7 8 5.8995 1.1251 0.0004 8 8 4.5983 2.9264 -0.0002 9 6 3.6535 -0.6684 0.0004 10 6 4.8910 -1.5284 0.0014 11 6 2.3156 -1.1213 0.0060 12 6 1.8662 -2.5250 0.0143 13 8 1.6807 -3.1104 -1.0357 14 7 1.6607 -3.1600 1.1852 15 6 1.2326 -4.4988 1.1930 16 6 0.9746 -5.2927 0.0610 17 7 0.5997 -6.4798 0.4657 18 7 0.5945 -6.4883 1.8664 19 6 0.2528 -7.5502 2.6672 20 1 0.3735 -7.4797 3.7381 21 6 -0.2485 -8.7157 2.0995 22 7 -0.2863 -8.8461 0.7937 23 14 -0.8682 -10.0962 3.1946 24 1 -2.3376 -9.9692 3.3675 25 1 -0.5550 -11.4049 2.5664 26 1 -0.2047 -10.0123 4.5204 27 6 0.9896 -5.2536 2.2940 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3634 0.8902 0.5135 30 1 -0.3634 -0.8898 0.5142 31 1 5.3946 3.4748 0.0000 32 1 5.1881 -1.7363 1.0292 33 1 4.6820 -2.4663 -0.5132 34 1 5.6978 -1.0048 -0.5113 35 1 1.8090 -2.6933 2.0226 36 1 1.0714 -4.9771 -0.9674 37 1 -0.6358 -9.6597 0.3975 38 1 1.0903 -4.9356 3.3212 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832847071.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:41 Heat of formation + Delta-G solvation = -3.119541 kcal Electronic energy + Delta-G solvation = -25592.542295 eV Core-core repulsion = 21630.687953 eV Total energy + Delta-G solvation = -3961.854342 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.90750 -39.99118 -39.63621 -38.16335 -36.43293 -34.09274 -33.21291 -33.03945 -31.83307 -30.18370 -28.41563 -27.49660 -27.12470 -24.99329 -23.44780 -22.12620 -20.85424 -19.92295 -19.46381 -19.20844 -18.70654 -17.68524 -17.34334 -16.16752 -16.05303 -15.53342 -15.37242 -15.25183 -14.65854 -14.33810 -14.03407 -13.66255 -13.49489 -13.24426 -13.18606 -13.03838 -12.83707 -12.81505 -12.45915 -12.26628 -11.89680 -11.73481 -11.65941 -11.38512 -11.24573 -10.90736 -10.75532 -10.50800 -10.07862 -9.33622 -9.12313 -8.89661 -8.75856 -8.39152 -8.01312 -6.64760 -6.52920 -4.19108 0.96010 2.11576 2.51123 2.82141 2.85633 2.88480 3.06537 3.07545 3.12472 3.71947 3.76433 3.98388 4.46073 4.50174 4.70997 4.79421 4.96555 5.04607 5.07190 5.26932 5.34092 5.50155 5.63650 5.73192 5.80393 6.00240 6.07408 6.18880 6.29186 6.44273 6.53438 6.62300 6.96117 7.01287 7.05453 7.18358 7.29007 7.58736 7.90372 8.25637 8.34507 8.68396 8.94495 9.42337 9.71640 10.43417 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.030501 B = 0.002594 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.795550 B =10791.271869 C =11089.306939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.116 3.884 3 N -0.519 5.519 4 H 0.424 0.576 5 C -0.062 4.062 6 C 0.555 3.445 7 O -0.503 6.503 8 O -0.524 6.524 9 C -0.012 4.012 10 C -0.101 4.101 11 C -0.215 4.215 12 C 0.577 3.423 13 O -0.529 6.529 14 N -0.615 5.615 15 C -0.058 4.058 16 C -0.033 4.033 17 N -0.261 5.261 18 N -0.144 5.144 19 C -0.324 4.324 20 H 0.116 0.884 21 C 0.047 3.953 22 N -0.770 5.770 23 Si 0.934 3.066 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.264 1.264 27 C -0.082 4.082 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.416 0.584 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.397 0.603 36 H 0.176 0.824 37 H 0.274 0.726 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.978 21.301 1.960 21.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.007 4.007 3 N -0.115 5.115 4 H 0.263 0.737 5 C -0.170 4.170 6 C 0.401 3.599 7 O -0.391 6.391 8 O -0.337 6.337 9 C -0.020 4.020 10 C -0.158 4.158 11 C -0.225 4.225 12 C 0.362 3.638 13 O -0.406 6.406 14 N -0.257 5.257 15 C -0.164 4.164 16 C -0.209 4.209 17 N -0.092 5.092 18 N 0.088 4.912 19 C -0.456 4.456 20 H 0.133 0.867 21 C -0.171 4.171 22 N -0.396 5.396 23 Si 0.758 3.242 24 H -0.197 1.197 25 H -0.201 1.201 26 H -0.188 1.188 27 C -0.233 4.233 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.275 0.725 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.231 0.769 36 H 0.193 0.807 37 H 0.085 0.915 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.395 19.339 0.662 19.646 hybrid contribution 0.465 1.443 1.236 1.956 sum 3.861 20.782 1.898 21.222 Atomic orbital electron populations 1.20582 0.86370 1.04390 1.04206 1.20810 0.93815 0.85120 1.00968 1.41457 1.04958 1.08806 1.56264 0.73703 1.18443 0.81832 0.92066 1.24649 1.19454 0.87583 0.80192 0.72721 1.90942 1.24498 1.76660 1.47040 1.84554 1.43645 1.18963 1.86555 1.19684 0.94679 0.90426 0.97194 1.20519 0.93545 0.98709 1.03050 1.19362 0.92520 0.92987 1.17585 1.17101 0.78637 0.84350 0.83736 1.90698 1.51408 1.66661 1.31799 1.42516 1.64591 1.10843 1.07757 1.17272 1.19571 0.85360 0.94174 1.24124 1.06200 0.91662 0.98871 1.78246 1.24954 1.17916 0.88086 1.44541 1.36006 1.06248 1.04366 1.19856 1.43946 0.91412 0.90378 0.86672 1.25631 0.96142 0.99048 0.96230 1.70225 1.33697 1.26074 1.09652 0.85829 0.79347 0.79404 0.79666 1.19688 1.20138 1.18816 1.21266 1.16778 0.88317 0.96969 0.89458 0.90755 0.88859 0.72488 0.90557 0.90746 0.89836 0.76950 0.80716 0.91517 0.83738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.84 10.24 36.01 0.37 -0.47 16 2 C 0.12 1.27 7.20 -81.53 -0.59 0.68 16 3 N -0.52 -4.74 6.01 -5.62 -0.03 -4.77 16 4 H 0.42 2.48 8.96 -40.82 -0.37 2.11 16 5 C -0.06 -0.72 7.02 -82.43 -0.58 -1.30 16 6 C 0.56 5.91 8.31 34.12 0.28 6.20 16 7 O -0.50 -6.62 15.48 -19.34 -0.30 -6.92 16 8 O -0.52 -3.57 13.44 -40.98 -0.55 -4.13 16 9 C -0.01 -0.16 6.21 -104.12 -0.65 -0.81 16 10 C -0.10 -1.37 9.63 36.00 0.35 -1.03 16 11 C -0.22 -3.10 5.89 -105.03 -0.62 -3.72 16 12 C 0.58 10.49 6.96 -12.54 -0.09 10.41 16 13 O -0.53 -11.76 14.25 5.24 0.07 -11.69 16 14 N -0.62 -11.09 5.46 -10.98 -0.06 -11.15 16 15 C -0.06 -1.34 6.90 -83.85 -0.58 -1.92 16 16 C -0.03 -0.87 10.85 -17.03 -0.18 -1.05 16 17 N -0.26 -7.60 10.42 30.80 0.32 -7.28 16 18 N -0.14 -3.95 3.74 -11.41 -0.04 -3.99 16 19 C -0.32 -8.57 10.24 -14.82 -0.15 -8.72 16 20 H 0.12 2.73 7.84 -52.48 -0.41 2.32 16 21 C 0.05 1.21 5.50 -17.51 -0.10 1.11 16 22 N -0.77 -21.58 11.84 55.49 0.66 -20.92 16 23 Si 0.93 18.96 29.56 -169.99 -5.02 13.94 16 24 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 25 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 26 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 27 C -0.08 -1.93 11.49 -16.39 -0.19 -2.12 16 28 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.94 7.92 -51.93 -0.41 0.53 16 31 H 0.42 1.02 9.11 45.56 0.42 1.43 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.10 8.06 -51.93 -0.42 0.68 16 34 H 0.08 1.11 6.41 -51.93 -0.33 0.78 16 35 H 0.40 5.76 8.81 -40.82 -0.36 5.40 16 36 H 0.18 4.60 5.91 -52.49 -0.31 4.29 16 37 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.15 2.82 8.06 -52.48 -0.42 2.40 16 LS Contribution 341.77 15.07 5.15 5.15 Total: -1.00 -36.43 341.77 -5.55 -41.98 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -3.02 Total: 12.52 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -2.72 Total: -2.74 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: 0.84 Total: -48.12 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.78 Total: -22.73 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.02 Total: 13.94 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -36.43 -5.55 -41.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832847071.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.857 kcal (2) G-P(sol) polarization free energy of solvation -36.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds