Wall clock time and date at job start Tue Mar 31 2020 12:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.34250 * 125.79177 * 2 1 4 4 H 0.96998 * 125.39708 * 359.97438 * 3 2 1 5 5 C 1.37822 * 109.20546 * 179.97438 * 3 2 1 6 6 C 1.46635 * 125.85999 * 179.97438 * 5 3 2 7 7 O 1.21598 * 120.00279 * 180.02562 * 6 5 3 8 8 O 1.34878 * 119.99887 * 0.02562 * 6 5 3 9 9 C 1.36453 * 108.28415 * 0.02562 * 5 3 2 10 10 C 1.50698 * 126.49744 * 180.02562 * 9 5 3 11 11 C 1.38243 * 125.79375 * 179.69222 * 2 1 3 12 12 C 1.47392 * 126.45207 * 359.96346 * 11 2 1 13 13 O 1.21641 * 119.99445 * 90.02969 * 12 11 2 14 14 N 1.34770 * 120.00506 * 270.02670 * 12 11 2 15 15 C 1.40563 * 120.00231 * 180.02562 * 14 12 11 16 16 C 1.40654 * 126.08299 * 359.68940 * 15 14 12 17 17 N 1.30907 * 108.39002 * 179.85793 * 16 15 14 18 18 N 1.40069 * 108.40766 * 0.40214 * 17 16 15 19 19 C 1.37316 * 126.06842 * 179.72663 * 18 17 16 20 20 H 1.08003 * 119.99724 * 174.15793 * 19 18 17 21 21 C 1.38990 * 120.00317 * 354.15111 * 19 18 17 22 22 N 1.31289 * 119.99384 * 5.94344 * 21 19 18 23 23 Si 1.86795 * 120.00020 * 185.94269 * 21 19 18 24 24 H 1.48500 * 109.47070 * 94.98149 * 23 21 19 25 25 H 1.48505 * 109.47149 * 214.98218 * 23 21 19 26 26 H 1.48496 * 109.47333 * 334.97962 * 23 21 19 27 27 C 1.35679 * 126.08280 * 179.97438 * 15 14 12 28 28 H 1.09001 * 109.46985 * 90.02359 * 1 2 3 29 29 H 1.09000 * 109.47276 * 330.02345 * 1 2 3 30 30 H 1.09002 * 109.47243 * 210.02362 * 1 2 3 31 31 H 0.96693 * 116.99945 * 179.97438 * 8 6 5 32 32 H 1.08995 * 109.46911 * 90.02367 * 10 9 5 33 33 H 1.08999 * 109.47009 * 210.02307 * 10 9 5 34 34 H 1.08997 * 109.47070 * 330.01916 * 10 9 5 35 35 H 0.97005 * 120.00020 * 359.97438 * 14 12 11 36 36 H 1.08000 * 125.80385 * 359.97438 * 16 15 14 37 37 H 0.97005 * 119.99825 * 179.97438 * 22 21 19 38 38 H 1.08005 * 126.24767 * 359.95447 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2922 1.0890 0.0000 4 1 1.9794 2.0071 -0.0004 5 6 3.6131 0.6955 0.0006 6 6 4.7756 1.5893 0.0002 7 8 5.8995 1.1251 0.0004 8 8 4.5983 2.9264 -0.0002 9 6 3.6535 -0.6684 0.0004 10 6 4.8910 -1.5284 0.0014 11 6 2.3156 -1.1213 0.0060 12 6 1.8662 -2.5250 0.0143 13 8 1.6807 -3.1104 -1.0357 14 7 1.6607 -3.1600 1.1852 15 6 1.2326 -4.4988 1.1930 16 6 0.9746 -5.2927 0.0610 17 7 0.5997 -6.4798 0.4657 18 7 0.5945 -6.4883 1.8664 19 6 0.2528 -7.5502 2.6672 20 1 0.3735 -7.4797 3.7381 21 6 -0.2485 -8.7157 2.0995 22 7 -0.2863 -8.8461 0.7937 23 14 -0.8682 -10.0962 3.1946 24 1 -2.3376 -9.9692 3.3675 25 1 -0.5550 -11.4049 2.5664 26 1 -0.2047 -10.0123 4.5204 27 6 0.9896 -5.2536 2.2940 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3634 0.8902 0.5135 30 1 -0.3634 -0.8898 0.5142 31 1 5.3946 3.4748 0.0000 32 1 5.1881 -1.7363 1.0292 33 1 4.6820 -2.4663 -0.5132 34 1 5.6978 -1.0048 -0.5113 35 1 1.8090 -2.6933 2.0226 36 1 1.0714 -4.9771 -0.9674 37 1 -0.6358 -9.6597 0.3975 38 1 1.0903 -4.9356 3.3212 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832847071.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:41 Heat of formation + Delta-G solvation = -31.087661 kcal Electronic energy + Delta-G solvation = -25593.755084 eV Core-core repulsion = 21630.687953 eV Total energy + Delta-G solvation = -3963.067131 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.85324 -41.59246 -40.72876 -39.75481 -37.16362 -35.85874 -34.91603 -34.11060 -32.81130 -32.14800 -29.81640 -28.92643 -28.00604 -26.85361 -24.68076 -23.15608 -22.73450 -21.33080 -20.90667 -20.39236 -19.71079 -19.11516 -18.44863 -17.50817 -17.24116 -17.07783 -16.76091 -16.55839 -15.76875 -15.64864 -15.51987 -15.03468 -14.87954 -14.70588 -14.41264 -14.29040 -14.10532 -13.75691 -13.47207 -13.29353 -13.26863 -13.21283 -12.94344 -12.78041 -12.67456 -12.60504 -12.05122 -11.80733 -11.67691 -10.99500 -10.90573 -10.74520 -10.06300 -9.94627 -9.33229 -8.49899 -8.44539 -6.21041 0.08850 1.10145 1.21737 1.42000 1.49693 1.60026 1.74840 1.89456 1.93763 2.04175 2.16294 2.50659 2.55630 2.98919 3.11123 3.67435 3.85321 3.92811 4.17283 4.38040 4.45160 4.48113 4.64423 4.67049 4.69318 4.75119 4.96442 5.03637 5.05909 5.11260 5.16936 5.32733 5.37040 5.50493 5.57355 5.64139 5.99409 6.34243 6.35255 6.76602 6.78935 6.92668 7.42060 7.50572 7.71915 8.55165 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.030501 B = 0.002594 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.795550 B =10791.271869 C =11089.306939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.138 3.862 3 N -0.493 5.493 4 H 0.444 0.556 5 C -0.058 4.058 6 C 0.564 3.436 7 O -0.532 6.532 8 O -0.507 6.507 9 C -0.034 4.034 10 C -0.096 4.096 11 C -0.248 4.248 12 C 0.585 3.415 13 O -0.574 6.574 14 N -0.605 5.605 15 C -0.042 4.042 16 C -0.058 4.058 17 N -0.310 5.310 18 N -0.168 5.168 19 C -0.354 4.354 20 H 0.141 0.859 21 C -0.007 4.007 22 N -0.825 5.825 23 Si 1.019 2.981 24 H -0.266 1.266 25 H -0.278 1.278 26 H -0.243 1.243 27 C -0.078 4.078 28 H 0.092 0.908 29 H 0.114 0.886 30 H 0.076 0.924 31 H 0.438 0.562 32 H 0.083 0.917 33 H 0.050 0.950 34 H 0.083 0.917 35 H 0.418 0.582 36 H 0.166 0.834 37 H 0.276 0.724 38 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.605 24.039 4.253 24.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.013 3.987 3 N -0.090 5.090 4 H 0.287 0.713 5 C -0.167 4.167 6 C 0.410 3.590 7 O -0.423 6.423 8 O -0.322 6.322 9 C -0.042 4.042 10 C -0.153 4.153 11 C -0.257 4.257 12 C 0.372 3.628 13 O -0.454 6.454 14 N -0.249 5.249 15 C -0.148 4.148 16 C -0.234 4.234 17 N -0.142 5.142 18 N 0.063 4.937 19 C -0.485 4.485 20 H 0.158 0.842 21 C -0.218 4.218 22 N -0.453 5.453 23 Si 0.838 3.162 24 H -0.191 1.191 25 H -0.203 1.203 26 H -0.166 1.166 27 C -0.228 4.228 28 H 0.111 0.889 29 H 0.133 0.867 30 H 0.095 0.905 31 H 0.301 0.699 32 H 0.101 0.899 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.254 0.746 36 H 0.183 0.817 37 H 0.086 0.914 38 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 3.047 22.196 2.990 22.603 hybrid contribution 0.642 0.837 0.480 1.159 sum 3.689 23.033 3.470 23.583 Atomic orbital electron populations 1.20702 0.84403 1.05593 1.04895 1.20975 0.94710 0.84399 0.98597 1.41361 1.03816 1.09449 1.54378 0.71264 1.18435 0.83067 0.91536 1.23676 1.19230 0.86571 0.81193 0.72018 1.90942 1.25472 1.77491 1.48373 1.84494 1.45012 1.17132 1.85574 1.19704 0.94141 0.91663 0.98678 1.20425 0.93964 0.97751 1.03169 1.19012 0.93689 0.91500 1.21548 1.17655 0.76791 0.85607 0.82743 1.90674 1.53045 1.68185 1.33450 1.42457 1.64324 1.09035 1.09089 1.17317 1.17589 0.87069 0.92832 1.24148 1.07462 0.92207 0.99538 1.78145 1.26718 1.19433 0.89922 1.44836 1.37247 1.07790 1.03870 1.20604 1.44453 0.91859 0.91541 0.84204 1.26877 0.95546 1.01772 0.97620 1.70407 1.35497 1.27173 1.12221 0.84582 0.78698 0.74933 0.78012 1.19113 1.20270 1.16578 1.21985 1.14857 0.87084 0.98895 0.88948 0.86730 0.90482 0.69906 0.89877 0.93058 0.89818 0.74564 0.81697 0.91437 0.79518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.41 10.24 71.24 0.73 -0.68 16 2 C 0.14 2.70 7.20 42.19 0.30 3.01 16 3 N -0.49 -7.31 6.01 -171.70 -1.03 -8.35 16 4 H 0.44 3.15 8.96 -92.71 -0.83 2.32 16 5 C -0.06 -1.22 7.02 39.98 0.28 -0.93 16 6 C 0.56 10.58 8.31 70.01 0.58 11.17 16 7 O -0.53 -13.20 15.48 19.51 0.30 -12.89 16 8 O -0.51 -5.01 13.44 -57.92 -0.78 -5.79 16 9 C -0.03 -0.91 6.21 -19.54 -0.12 -1.03 16 10 C -0.10 -2.66 9.63 71.24 0.69 -1.97 16 11 C -0.25 -6.98 5.89 -20.13 -0.12 -7.09 16 12 C 0.58 21.59 6.96 86.65 0.60 22.19 16 13 O -0.57 -26.67 14.25 -4.16 -0.06 -26.73 16 14 N -0.61 -21.69 5.46 -306.88 -1.68 -23.36 16 15 C -0.04 -1.95 6.90 37.74 0.26 -1.69 16 16 C -0.06 -3.23 10.85 85.42 0.93 -2.30 16 17 N -0.31 -18.92 10.42 -56.46 -0.59 -19.51 16 18 N -0.17 -9.40 3.74 -190.00 -0.71 -10.11 16 19 C -0.35 -18.79 10.24 84.01 0.86 -17.93 16 20 H 0.14 6.43 7.84 -2.91 -0.02 6.41 16 21 C -0.01 -0.35 5.50 84.95 0.47 0.12 16 22 N -0.82 -48.05 11.84 21.66 0.26 -47.79 16 23 Si 1.02 38.77 29.56 68.60 2.03 40.80 16 24 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 25 H -0.28 -10.48 7.11 99.48 0.71 -9.78 16 26 H -0.24 -8.31 7.11 99.48 0.71 -7.61 16 27 C -0.08 -3.62 11.49 83.37 0.96 -2.66 16 28 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 1.42 7.92 -2.39 -0.02 1.40 16 31 H 0.44 0.47 9.11 -74.06 -0.67 -0.21 16 32 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.05 1.61 8.06 -2.39 -0.02 1.59 16 34 H 0.08 2.27 6.41 -2.39 -0.02 2.25 16 35 H 0.42 11.49 8.81 -92.70 -0.82 10.68 16 36 H 0.17 9.31 5.91 -2.91 -0.02 9.30 16 37 H 0.28 14.76 8.31 -92.70 -0.77 13.99 16 38 H 0.19 6.81 8.06 -2.91 -0.02 6.79 16 Total: -1.00 -84.44 341.77 3.01 -81.43 By element: Atomic # 1 Polarization: 33.26 SS G_CDS: -1.15 Total: 32.11 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: 6.42 Total: 0.19 kcal Atomic # 7 Polarization: -105.37 SS G_CDS: -3.75 Total: -109.12 kcal Atomic # 8 Polarization: -44.87 SS G_CDS: -0.54 Total: -45.41 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Total: -84.44 3.01 -81.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832847071.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.344 kcal (2) G-P(sol) polarization free energy of solvation -84.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds