Wall clock time and date at job start Tue Mar 31 2020 11:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28442 * 125.19411 * 2 1 4 4 C 1.30876 * 110.94146 * 180.02562 * 3 2 1 5 5 C 1.50707 * 126.05865 * 180.02562 * 4 3 2 6 6 F 1.39900 * 109.46708 * 5.02300 * 5 4 3 7 7 F 1.39898 * 109.47063 * 245.02315 * 5 4 3 8 8 F 1.39900 * 109.47132 * 125.01799 * 5 4 3 9 9 C 1.39641 * 107.88224 * 0.25946 * 4 3 2 10 10 C 1.36653 * 125.19750 * 180.02562 * 2 1 3 11 11 C 1.47006 * 126.89254 * 359.97438 * 10 2 1 12 12 O 1.21548 * 119.99706 * 184.72909 * 11 10 2 13 13 O 1.34821 * 119.99921 * 4.73747 * 11 10 2 14 14 C 1.45204 * 116.99672 * 185.06321 * 13 11 10 15 15 C 1.53000 * 109.46991 * 176.47117 * 14 13 11 16 16 C 1.50698 * 115.55121 * 306.77984 * 15 14 13 17 17 H 1.07997 * 120.00423 * 144.25158 * 16 15 14 18 18 C 1.37880 * 119.99737 * 324.24070 * 16 15 14 19 19 N 1.31518 * 120.00070 * 350.81593 * 18 16 15 20 20 Si 1.86800 * 120.00086 * 170.80679 * 18 16 15 21 21 H 1.48498 * 109.46850 * 60.00427 * 20 18 16 22 22 H 1.48499 * 109.47012 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47101 * 300.00833 * 20 18 16 24 24 C 1.52996 * 117.49892 * 161.10134 * 15 14 13 25 25 C 1.53006 * 117.49582 * 92.44118 * 15 14 13 26 26 H 1.08997 * 109.47298 * 96.53592 * 1 2 3 27 27 H 1.09010 * 109.47086 * 216.53733 * 1 2 3 28 28 H 1.08998 * 109.47387 * 336.53324 * 1 2 3 29 29 H 1.07993 * 127.32293 * 179.74069 * 9 4 3 30 30 H 1.09004 * 109.46718 * 296.47138 * 14 13 11 31 31 H 1.08995 * 109.46982 * 56.46927 * 14 13 11 32 32 H 0.96997 * 120.00076 * 185.03172 * 19 18 16 33 33 H 1.09001 * 117.49834 * 0.02562 * 24 15 14 34 34 H 1.09001 * 117.49991 * 145.02075 * 24 15 14 35 35 H 1.08997 * 117.49701 * 214.97968 * 25 15 14 36 36 H 1.08999 * 117.49943 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2053 1.0496 0.0000 4 6 3.4737 0.7274 -0.0005 5 6 4.6335 1.6899 -0.0002 6 9 4.1532 2.9986 0.1163 7 9 5.3477 1.5599 -1.1961 8 9 5.4760 1.4045 1.0796 9 6 3.5621 -0.6662 -0.0070 10 6 2.2527 -1.1167 -0.0005 11 6 1.8006 -2.5155 -0.0006 12 8 2.6120 -3.4164 0.0857 13 8 0.4860 -2.7991 -0.0966 14 6 0.1023 -4.1944 0.0231 15 6 -1.4227 -4.3095 -0.0225 16 6 -2.1695 -3.4464 0.9615 17 1 -3.1153 -3.0052 0.6837 18 6 -1.6454 -3.2203 2.2166 19 7 -0.5923 -3.8963 2.6210 20 14 -2.4309 -1.9535 3.3424 21 1 -3.8422 -2.3331 3.6061 22 1 -1.6842 -1.9004 4.6249 23 1 -2.3907 -0.6196 2.6910 24 6 -2.0181 -5.6791 -0.3550 25 6 -2.0725 -4.5497 -1.3868 26 1 -0.3634 -0.1170 -1.0209 27 1 -0.3634 -0.8258 0.6119 28 1 -0.3634 0.9426 0.4092 29 1 4.4607 -1.2652 -0.0130 30 1 0.5344 -4.7620 -0.8010 31 1 0.4685 -4.5919 0.9696 32 1 -0.2676 -3.7908 3.5289 33 1 -1.3233 -6.4982 -0.5408 34 1 -2.9501 -5.9559 0.1378 35 1 -3.0402 -4.0838 -1.5723 36 1 -1.4135 -4.6251 -2.2518 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835188059.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:31 Heat of formation + Delta-G solvation = -137.259284 kcal Electronic energy + Delta-G solvation = -27163.480586 eV Core-core repulsion = 22621.660016 eV Total energy + Delta-G solvation = -4541.820570 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -51.22087 -48.73393 -48.72033 -44.07781 -41.13307 -38.58798 -36.97847 -35.06610 -34.18316 -32.60960 -29.75390 -28.65674 -27.44602 -26.32112 -24.94741 -22.97914 -22.78495 -21.58975 -21.11502 -19.84561 -19.63238 -19.35467 -18.59637 -17.86142 -17.80628 -17.61719 -17.00094 -16.59126 -16.43202 -15.60023 -15.57693 -15.46507 -15.17056 -15.13753 -14.91311 -14.85781 -14.84107 -14.17169 -14.03958 -13.82785 -13.58820 -13.53790 -13.44892 -12.82815 -12.77477 -12.50523 -12.37278 -12.11609 -11.93114 -11.51003 -11.34130 -11.03582 -10.81458 -10.66583 -10.56155 -10.07931 -8.06985 -6.18008 -0.26689 0.66329 0.85119 1.37546 1.41180 1.45763 1.51074 1.68897 1.76334 2.40704 2.46170 2.80476 3.00951 3.28781 3.30307 3.55294 3.64833 3.95002 4.11476 4.21052 4.25589 4.28302 4.38719 4.58652 4.69254 4.76999 4.82365 4.92039 4.95797 5.16770 5.21157 5.41045 5.52313 5.57665 5.83012 6.31626 6.35004 6.65105 6.82531 7.44638 8.91607 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.017696 B = 0.004094 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.894827 B = 6837.241395 C = 7533.375885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.233 5.233 3 N -0.218 5.218 4 C -0.088 4.088 5 C 0.574 3.426 6 F -0.168 7.168 7 F -0.164 7.164 8 F -0.165 7.165 9 C -0.104 4.104 10 C -0.026 4.026 11 C 0.534 3.466 12 O -0.523 6.523 13 O -0.322 6.322 14 C 0.125 3.875 15 C 0.013 3.987 16 C -0.489 4.489 17 H 0.062 0.938 18 C 0.038 3.962 19 N -0.908 5.908 20 Si 0.934 3.066 21 H -0.274 1.274 22 H -0.296 1.296 23 H -0.254 1.254 24 C -0.189 4.189 25 C -0.183 4.183 26 H 0.117 0.883 27 H 0.101 0.899 28 H 0.123 0.877 29 H 0.195 0.805 30 H 0.040 0.960 31 H 0.086 0.914 32 H 0.259 0.741 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.938 9.392 -6.009 12.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.025 5.025 3 N -0.056 5.056 4 C -0.243 4.243 5 C 0.518 3.482 6 F -0.149 7.149 7 F -0.145 7.145 8 F -0.146 7.146 9 C -0.131 4.131 10 C -0.151 4.151 11 C 0.377 3.623 12 O -0.413 6.413 13 O -0.237 6.237 14 C 0.051 3.949 15 C 0.012 3.988 16 C -0.527 4.527 17 H 0.080 0.920 18 C -0.163 4.163 19 N -0.546 5.546 20 Si 0.760 3.240 21 H -0.200 1.200 22 H -0.223 1.223 23 H -0.178 1.178 24 C -0.227 4.227 25 C -0.221 4.221 26 H 0.135 0.865 27 H 0.120 0.880 28 H 0.142 0.858 29 H 0.213 0.787 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.426 10.004 -5.861 12.802 hybrid contribution 0.229 -0.527 0.904 1.072 sum 5.656 9.477 -4.957 12.098 Atomic orbital electron populations 1.22868 0.69229 1.07209 1.07300 1.46263 1.09384 1.01132 1.45752 1.73057 1.02464 1.14021 1.16107 1.21748 0.92330 0.93787 1.16439 1.16416 0.79862 0.77768 0.74139 1.93223 1.88057 1.37909 1.95700 1.93247 1.79328 1.95700 1.46218 1.93248 1.72451 1.93373 1.55524 1.22061 0.96587 0.92651 1.01838 1.20803 0.91689 0.86604 1.15974 1.19739 0.82300 0.87060 0.73183 1.90823 1.55823 1.47286 1.47354 1.86538 1.22813 1.33555 1.80755 1.22695 0.95374 0.75861 1.00921 1.18989 0.89290 0.96087 0.94423 1.20613 1.05471 1.29111 0.97455 0.91986 1.25479 0.94880 0.96889 0.99006 1.69912 1.25324 1.41851 1.17545 0.85985 0.78531 0.81310 0.78222 1.19969 1.22277 1.17813 1.22984 1.02553 0.92623 1.04579 1.22998 1.02468 1.03646 0.92938 0.86463 0.88020 0.85847 0.78746 0.94209 0.89641 0.93148 0.90266 0.90072 0.89422 0.89416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.91 10.54 127.77 1.35 3.26 16 2 N -0.23 -7.16 3.75 -356.07 -1.34 -8.50 16 3 N -0.22 -6.45 11.68 -47.50 -0.56 -7.01 16 4 C -0.09 -2.46 6.50 43.04 0.28 -2.18 16 5 C 0.57 13.72 3.51 71.24 0.25 13.97 16 6 F -0.17 -4.09 17.14 44.97 0.77 -3.32 16 7 F -0.16 -3.70 17.30 44.97 0.78 -2.92 16 8 F -0.16 -3.85 17.30 44.97 0.78 -3.07 16 9 C -0.10 -3.03 10.78 22.67 0.24 -2.78 16 10 C -0.03 -0.89 6.96 40.75 0.28 -0.61 16 11 C 0.53 21.31 7.92 70.12 0.56 21.86 16 12 O -0.52 -22.94 16.72 19.68 0.33 -22.61 16 13 O -0.32 -13.45 7.55 -57.33 -0.43 -13.88 16 14 C 0.12 5.56 4.53 71.98 0.33 5.88 16 15 C 0.01 0.55 2.13 -52.93 -0.11 0.44 16 16 C -0.49 -23.33 8.76 25.60 0.22 -23.10 16 17 H 0.06 2.91 7.83 -2.91 -0.02 2.88 16 18 C 0.04 1.84 5.20 84.65 0.44 2.28 16 19 N -0.91 -47.28 10.74 21.45 0.23 -47.05 16 20 Si 0.93 38.66 29.55 68.60 2.03 40.68 16 21 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 22 H -0.30 -12.73 7.11 99.48 0.71 -12.02 16 23 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 24 C -0.19 -7.52 9.96 30.62 0.30 -7.21 16 25 C -0.18 -6.75 9.92 30.62 0.30 -6.45 16 26 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 27 H 0.10 3.35 6.69 -2.38 -0.02 3.33 16 28 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.20 4.81 8.06 -2.91 -0.02 4.79 16 30 H 0.04 1.66 8.08 -2.39 -0.02 1.64 16 31 H 0.09 4.38 6.03 -2.39 -0.01 4.37 16 32 H 0.26 13.33 8.32 -92.71 -0.77 12.56 16 33 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 34 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 35 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 36 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 Total: -1.00 -55.10 333.62 8.17 -46.93 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 1.14 Total: 15.39 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 4.45 Total: 5.36 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: -1.66 Total: -62.56 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -0.10 Total: -36.49 kcal Atomic # 9 Polarization: -11.64 SS G_CDS: 2.33 Total: -9.32 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.68 kcal Total: -55.10 8.17 -46.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835188059.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.334 kcal (2) G-P(sol) polarization free energy of solvation -55.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds