Wall clock time and date at job start Tue Mar 31 2020 11:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00454 * 2 1 4 4 C 1.52997 * 109.47121 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47360 * 65.00134 * 4 3 2 6 6 C 1.36793 * 119.99796 * 270.00098 * 5 4 3 7 7 H 1.08004 * 119.99791 * 140.33902 * 6 5 4 8 8 C 1.39106 * 119.99958 * 320.33585 * 6 5 4 9 9 N 1.31324 * 119.99442 * 161.04353 * 8 6 5 10 10 Si 1.86796 * 120.00174 * 341.03848 * 8 6 5 11 11 H 1.48504 * 109.47007 * 95.35825 * 10 8 6 12 12 H 1.48497 * 109.47356 * 215.36077 * 10 8 6 13 13 H 1.48503 * 109.47220 * 335.36540 * 10 8 6 14 14 C 1.34774 * 120.00050 * 89.99403 * 5 4 3 15 15 O 1.21565 * 119.99684 * 6.00942 * 14 5 4 16 16 C 1.47987 * 120.00307 * 186.00520 * 14 5 4 17 17 C 1.39939 * 120.92832 * 329.51178 * 16 14 5 18 18 C 1.38084 * 118.99100 * 179.97438 * 17 16 14 19 19 N 1.31848 * 120.90780 * 359.97438 * 18 17 16 20 20 C 1.31831 * 122.06807 * 0.02562 * 19 18 17 21 21 C 1.50690 * 119.54870 * 179.97438 * 20 19 18 22 22 F 1.39904 * 109.47304 * 4.99993 * 21 20 19 23 23 F 1.39908 * 109.47372 * 125.00245 * 21 20 19 24 24 F 1.39899 * 109.47365 * 244.99640 * 21 20 19 25 25 C 1.38128 * 120.89756 * 0.02562 * 20 19 18 26 26 H 1.08997 * 109.47596 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46400 * 300.00250 * 1 2 3 28 28 H 1.08998 * 109.47088 * 59.99324 * 1 2 3 29 29 H 1.09002 * 109.46614 * 60.00380 * 3 2 1 30 30 H 1.08999 * 109.46853 * 300.00356 * 3 2 1 31 31 H 1.08996 * 109.47053 * 305.00072 * 4 3 2 32 32 H 1.08999 * 109.47303 * 185.00151 * 4 3 2 33 33 H 0.97012 * 119.99364 * 179.97438 * 9 8 6 34 34 H 1.07998 * 120.50091 * 359.97438 * 17 16 14 35 35 H 1.08000 * 119.53856 * 179.97438 * 18 17 16 36 36 H 1.08004 * 120.49935 * 180.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9758 0.5642 -1.2528 6 6 4.0966 -0.7958 -1.3368 7 1 3.7896 -1.3107 -2.2352 8 6 4.6149 -1.5155 -0.2652 9 7 4.3975 -2.8075 -0.1756 10 14 5.6201 -0.6443 1.0462 11 1 4.7390 -0.2806 2.1850 12 1 6.6990 -1.5462 1.5235 13 1 6.2213 0.5866 0.4728 14 6 4.2615 1.3335 -2.3218 15 8 4.2601 2.5446 -2.2169 16 6 4.5771 0.7040 -3.6234 17 6 5.1950 -0.5501 -3.6847 18 6 5.4708 -1.1006 -4.9207 19 7 5.1597 -0.4617 -6.0313 20 6 4.5772 0.7209 -6.0187 21 6 4.2473 1.4007 -7.3225 22 9 4.5464 0.5414 -8.3853 23 9 2.8856 1.7204 -7.3503 24 9 5.0036 2.5715 -7.4424 25 6 4.2662 1.3457 -4.8268 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.6888 1.8462 0.8901 30 1 1.6887 1.8463 -0.8900 31 1 3.8515 0.5680 0.8409 32 1 3.9787 2.1763 0.0889 33 1 4.7593 -3.3096 0.5715 34 1 5.4522 -1.0794 -2.7791 35 1 5.9478 -2.0678 -4.9784 36 1 3.7886 2.3145 -4.8240 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837234197.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:26 Heat of formation + Delta-G solvation = -163.878677 kcal Electronic energy + Delta-G solvation = -27336.460880 eV Core-core repulsion = 22793.486007 eV Total energy + Delta-G solvation = -4542.974873 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.98955 -47.52608 -47.44179 -40.31392 -38.77778 -37.16514 -35.19475 -32.62965 -32.24445 -31.78321 -29.51323 -26.44096 -26.02169 -25.31814 -24.07930 -22.60194 -22.24359 -19.80553 -18.49084 -18.38054 -18.27260 -17.30731 -16.61925 -16.23610 -15.79124 -15.48964 -15.22478 -14.92600 -14.52782 -14.46465 -14.42222 -14.21462 -13.97181 -13.91412 -13.78571 -13.61374 -13.59666 -13.37717 -12.78432 -12.69083 -12.44823 -12.05824 -11.84124 -11.62294 -11.36213 -11.00583 -10.98212 -10.33129 -10.09436 -9.70630 -9.53525 -9.41196 -9.20359 -9.04606 -8.80762 -8.04052 -6.67189 -4.27749 1.05051 1.18317 2.66316 2.91442 3.07851 3.13166 3.35316 3.68745 3.81656 3.94713 4.03212 4.22716 4.30700 4.57984 4.74646 4.89443 5.22222 5.26512 5.34261 5.48425 5.53933 5.66229 5.72657 5.76194 5.83698 5.85902 5.95344 6.04598 6.20344 6.28059 6.57706 6.84892 7.06931 7.65326 7.80699 7.89229 7.97262 8.65628 9.02966 9.33854 10.39949 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.016002 B = 0.004537 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.372536 B = 6170.430791 C = 6798.260674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.357 6.357 3 C 0.054 3.946 4 C 0.098 3.902 5 N -0.434 5.434 6 C -0.349 4.349 7 H 0.113 0.887 8 C 0.077 3.923 9 N -0.840 5.840 10 Si 0.874 3.126 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.259 1.259 14 C 0.510 3.490 15 O -0.590 6.590 16 C -0.054 4.054 17 C -0.091 4.091 18 C 0.085 3.915 19 N -0.445 5.445 20 C 0.010 3.990 21 C 0.526 3.474 22 F -0.166 7.166 23 F -0.175 7.175 24 F -0.175 7.175 25 C -0.083 4.083 26 H 0.082 0.918 27 H 0.031 0.969 28 H 0.033 0.967 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.279 0.721 34 H 0.193 0.807 35 H 0.169 0.831 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.724 3.932 -4.123 5.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C -0.023 4.023 4 C -0.025 4.025 5 N -0.152 5.152 6 C -0.475 4.475 7 H 0.130 0.870 8 C -0.133 4.133 9 N -0.473 5.473 10 Si 0.701 3.299 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.183 1.183 14 C 0.299 3.701 15 O -0.476 6.476 16 C -0.065 4.065 17 C -0.111 4.111 18 C -0.073 4.073 19 N -0.155 5.155 20 C -0.128 4.128 21 C 0.470 3.530 22 F -0.147 7.147 23 F -0.156 7.156 24 F -0.156 7.156 25 C -0.104 4.104 26 H 0.100 0.900 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.209 0.791 35 H 0.186 0.814 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.424 3.784 -4.756 6.243 hybrid contribution -0.193 0.857 1.411 1.662 sum -1.618 4.642 -3.346 5.946 Atomic orbital electron populations 1.22670 0.82784 1.02234 0.98829 1.88212 1.17885 1.26401 1.95037 1.22849 0.94503 0.85453 0.99540 1.21838 0.92557 0.99423 0.88686 1.43461 1.55556 1.07179 1.09030 1.19188 1.43406 0.79239 1.05707 0.86992 1.25271 0.95761 0.95183 0.97109 1.69700 1.39359 1.07387 1.30843 0.86961 0.80388 0.80534 0.82007 1.19749 1.21057 1.18316 1.17926 0.81472 0.86102 0.84551 1.90664 1.57956 1.13728 1.85246 1.20293 0.97717 0.94709 0.93747 1.23913 0.91581 0.93873 1.01730 1.22838 0.97915 0.99834 0.86701 1.66958 1.08676 1.06334 1.33505 1.20550 1.05436 0.95156 0.91674 1.17883 0.74329 0.76514 0.84227 1.93202 1.92908 1.69892 1.58726 1.93213 1.32570 1.93076 1.96777 1.93214 1.76174 1.49822 1.96423 1.21741 0.97289 1.00491 0.90924 0.89973 0.95084 0.94832 0.93507 0.93339 0.90444 0.89116 0.91063 0.79050 0.81375 0.83750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.36 -7.12 10.18 -35.23 -0.36 -7.48 16 3 C 0.05 0.99 6.28 37.16 0.23 1.23 16 4 C 0.10 1.98 4.65 -4.04 -0.02 1.97 16 5 N -0.43 -9.59 2.12 -115.84 -0.25 -9.83 16 6 C -0.35 -8.05 6.27 -15.02 -0.09 -8.14 16 7 H 0.11 2.71 6.02 -52.48 -0.32 2.39 16 8 C 0.08 1.82 5.35 -17.45 -0.09 1.72 16 9 N -0.84 -20.82 13.95 55.50 0.77 -20.05 16 10 Si 0.87 18.55 24.90 -169.99 -4.23 14.31 16 11 H -0.27 -5.63 6.72 56.52 0.38 -5.25 16 12 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 13 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 14 C 0.51 11.18 7.46 -12.27 -0.09 11.09 16 15 O -0.59 -13.83 16.36 5.31 0.09 -13.74 16 16 C -0.05 -1.05 5.61 -104.65 -0.59 -1.64 16 17 C -0.09 -1.65 7.82 -39.00 -0.31 -1.95 16 18 C 0.09 1.37 11.17 -17.60 -0.20 1.17 16 19 N -0.45 -7.66 9.71 -9.54 -0.09 -7.76 16 20 C 0.01 0.17 6.26 -82.64 -0.52 -0.34 16 21 C 0.53 8.16 3.31 36.00 0.12 8.28 16 22 F -0.17 -2.59 16.85 2.25 0.04 -2.56 16 23 F -0.17 -2.64 17.16 2.25 0.04 -2.60 16 24 F -0.17 -2.64 17.28 2.25 0.04 -2.60 16 25 C -0.08 -1.49 9.20 -39.01 -0.36 -1.85 16 26 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 27 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 1.62 3.29 -51.93 -0.17 1.45 16 32 H 0.09 1.75 7.35 -51.93 -0.38 1.37 16 33 H 0.28 6.50 8.31 -40.81 -0.34 6.16 16 34 H 0.19 3.66 5.23 -52.49 -0.27 3.39 16 35 H 0.17 2.16 8.06 -52.49 -0.42 1.73 16 36 H 0.14 2.46 8.00 -52.48 -0.42 2.04 16 LS Contribution 320.80 15.07 4.83 4.83 Total: -1.00 -27.13 320.80 -3.17 -30.30 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -3.26 Total: 4.04 kcal Atomic # 6 Polarization: 13.91 SS G_CDS: -0.80 Total: 13.12 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.44 Total: -37.64 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.27 Total: -21.22 kcal Atomic # 9 Polarization: -7.87 SS G_CDS: 0.12 Total: -7.75 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -4.23 Total: 14.31 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.13 -3.17 -30.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837234197.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.576 kcal (2) G-P(sol) polarization free energy of solvation -27.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds