Wall clock time and date at job start Tue Mar 31 2020 11:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99977 * 2 1 4 4 C 1.52997 * 109.47151 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.47018 * 64.99858 * 4 3 2 6 6 C 1.36935 * 119.99877 * 269.99868 * 5 4 3 7 7 H 1.07995 * 119.99835 * 145.82571 * 6 5 4 8 8 C 1.38817 * 119.99980 * 325.82429 * 6 5 4 9 9 N 1.31614 * 120.00238 * 337.54004 * 8 6 5 10 10 Si 1.86800 * 119.99701 * 157.54340 * 8 6 5 11 11 H 1.48497 * 109.47172 * 89.99865 * 10 8 6 12 12 H 1.48504 * 109.47081 * 209.99835 * 10 8 6 13 13 H 1.48500 * 109.47409 * 329.99972 * 10 8 6 14 14 C 1.46495 * 120.00009 * 90.00300 * 5 4 3 15 15 N 1.46500 * 109.47018 * 275.50313 * 14 5 4 16 16 N 1.37789 * 122.69799 * 270.19581 * 15 14 5 17 17 C 1.28461 * 116.18838 * 180.32300 * 16 15 14 18 18 N 1.38777 * 125.02774 * 179.73191 * 17 16 15 19 19 C 1.46493 * 120.00180 * 359.97310 * 18 17 16 20 20 C 1.46508 * 119.99574 * 179.97438 * 18 17 16 21 21 S 1.75934 * 109.94312 * 359.73098 * 17 16 15 22 22 C 1.33510 * 122.69953 * 89.99946 * 15 14 5 23 23 S 1.71199 * 125.65281 * 359.97438 * 22 15 14 24 24 H 1.09005 * 109.47215 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47317 * 299.99952 * 1 2 3 26 26 H 1.09001 * 109.47224 * 60.00047 * 1 2 3 27 27 H 1.09003 * 109.47000 * 59.99574 * 3 2 1 28 28 H 1.09004 * 109.47046 * 300.00337 * 3 2 1 29 29 H 1.09006 * 109.47009 * 305.00019 * 4 3 2 30 30 H 1.08997 * 109.47124 * 184.99887 * 4 3 2 31 31 H 0.97006 * 120.00324 * 179.97438 * 9 8 6 32 32 H 1.08997 * 109.47046 * 155.49766 * 14 5 4 33 33 H 1.09004 * 109.47108 * 35.49937 * 14 5 4 34 34 H 1.09005 * 109.46945 * 90.00104 * 19 18 17 35 35 H 1.08999 * 109.47093 * 210.00239 * 19 18 17 36 36 H 1.09002 * 109.47011 * 330.00265 * 19 18 17 37 37 H 1.09001 * 109.47209 * 60.00034 * 20 18 17 38 38 H 1.09004 * 109.46747 * 179.97438 * 20 18 17 39 39 H 1.08995 * 109.47084 * 299.99925 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.0967 -0.7970 -1.3369 7 1 3.8738 -1.3026 -2.2647 8 6 4.5061 -1.5271 -0.2295 9 7 5.1870 -0.9394 0.7313 10 14 4.0907 -3.3440 -0.1031 11 1 5.1773 -4.1445 -0.7224 12 1 3.9508 -3.7214 1.3264 13 1 2.8136 -3.6103 -0.8126 14 6 4.2864 1.4006 -2.4148 15 7 3.0525 1.6971 -3.1469 16 7 2.5769 0.8937 -4.1603 17 6 1.4864 1.2753 -4.7219 18 7 0.8504 0.6103 -5.7607 19 6 1.4225 -0.6267 -6.2977 20 6 -0.3934 1.1456 -6.3203 21 16 0.9186 2.7657 -3.9792 22 6 2.2965 2.7655 -2.8834 23 16 2.6176 3.9437 -1.6835 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8515 0.5682 0.8410 30 1 3.9785 2.1765 0.0889 31 1 5.4728 -1.4495 1.5054 32 1 4.9787 0.8707 -3.0690 33 1 4.7432 2.3321 -2.0804 34 1 1.0228 -1.4798 -5.7495 35 1 1.1636 -0.7188 -7.3525 36 1 2.5070 -0.6018 -6.1907 37 1 -0.2126 2.1441 -6.7183 38 1 -0.7418 0.4932 -7.1210 39 1 -1.1507 1.1978 -5.5382 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840153174.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:47 Heat of formation + Delta-G solvation = 61.093731 kcal Electronic energy + Delta-G solvation = -23827.866700 eV Core-core repulsion = 20446.993676 eV Total energy + Delta-G solvation = -3380.873024 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.093 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.44874 -39.02579 -38.30250 -37.03341 -34.02624 -32.72589 -30.96918 -29.26222 -28.55330 -27.55411 -27.20048 -25.52581 -24.21150 -22.50596 -21.90759 -20.49146 -19.14776 -18.57811 -17.77552 -17.24365 -17.00151 -16.76024 -16.63521 -16.49373 -15.88923 -15.65836 -15.41008 -15.27555 -14.74329 -14.16283 -13.59353 -13.56740 -13.55041 -13.34689 -13.03918 -12.90370 -12.86143 -12.78624 -12.67439 -12.49447 -12.47129 -12.05596 -12.04372 -11.61746 -11.55171 -10.90242 -10.68703 -10.41498 -9.49279 -9.07360 -8.70946 -8.53220 -7.96881 -5.53833 -0.68283 -0.59669 -0.11050 0.61039 0.76137 1.12419 1.42518 1.47088 1.55990 2.12119 2.45550 3.09238 3.23459 3.42684 3.47048 4.10117 4.28176 4.33065 4.38092 4.41497 4.45700 4.46992 4.57392 4.59949 4.66513 4.68190 4.77202 4.79852 4.90964 4.98383 5.10862 5.60015 5.60823 5.68661 5.72486 6.24116 6.49524 6.52690 6.97169 7.61057 8.08521 9.03800 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.012676 B = 0.006232 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.338715 B = 4491.835865 C = 5362.130939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.396 6.396 3 C 0.059 3.941 4 C 0.140 3.860 5 N -0.539 5.539 6 C -0.264 4.264 7 H 0.057 0.943 8 C -0.010 4.010 9 N -0.905 5.905 10 Si 0.959 3.041 11 H -0.278 1.278 12 H -0.292 1.292 13 H -0.280 1.280 14 C 0.340 3.660 15 N -0.298 5.298 16 N -0.346 5.346 17 C 0.310 3.690 18 N -0.572 5.572 19 C 0.095 3.905 20 C 0.079 3.921 21 S 0.144 5.856 22 C 0.220 3.780 23 S -0.593 6.593 24 H 0.088 0.912 25 H 0.046 0.954 26 H 0.030 0.970 27 H 0.032 0.968 28 H 0.043 0.957 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.256 0.744 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.054 0.946 35 H 0.116 0.884 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.127 0.873 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.778 2.117 -16.056 20.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.315 6.315 3 C -0.020 4.020 4 C 0.014 3.986 5 N -0.255 5.255 6 C -0.394 4.394 7 H 0.075 0.925 8 C -0.209 4.209 9 N -0.547 5.547 10 Si 0.787 3.213 11 H -0.204 1.204 12 H -0.218 1.218 13 H -0.205 1.205 14 C 0.131 3.869 15 N -0.092 5.092 16 N -0.177 5.177 17 C -0.077 4.077 18 N -0.295 5.295 19 C -0.048 4.048 20 C -0.062 4.062 21 S 0.377 5.623 22 C -0.157 4.157 23 S -0.464 6.464 24 H 0.106 0.894 25 H 0.064 0.936 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.072 0.928 35 H 0.134 0.866 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.146 0.854 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.577 2.449 -15.405 20.038 hybrid contribution 0.065 -1.395 0.286 1.425 sum -12.513 1.054 -15.119 19.654 Atomic orbital electron populations 1.22765 0.81850 1.02557 0.99543 1.88091 1.19377 1.28850 1.95172 1.23338 0.96753 0.83231 0.98669 1.21195 0.89657 0.96777 0.90925 1.44412 1.70592 1.03381 1.07076 1.18982 1.40107 0.81836 0.98436 0.92497 1.25572 0.96219 1.01447 0.97633 1.70061 1.36094 1.37520 1.11053 0.85449 0.78131 0.81097 0.76617 1.20447 1.21782 1.20550 1.21820 0.80528 0.97311 0.87277 1.52342 1.21161 1.12700 1.22979 1.74277 1.15599 1.20097 1.07758 1.24991 0.93019 0.95213 0.94459 1.46166 1.25756 1.25825 1.31753 1.21966 0.99194 0.83285 1.00383 1.22286 0.82219 1.01421 1.00276 1.85791 1.25362 1.21405 1.29761 1.28755 0.94285 0.93901 0.98775 1.92863 1.83123 1.36391 1.34051 0.89362 0.93586 0.95119 0.95027 0.93939 0.90094 0.92301 0.93450 0.87927 0.87736 0.92758 0.86570 0.92196 0.90672 0.85427 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.05 11.01 113.37 1.25 2.30 16 2 O -0.40 -18.70 10.18 -148.98 -1.52 -20.22 16 3 C 0.06 2.71 5.71 71.98 0.41 3.12 16 4 C 0.14 7.02 5.30 86.38 0.46 7.48 16 5 N -0.54 -26.76 2.67 -713.75 -1.91 -28.67 16 6 C -0.26 -14.21 8.96 84.03 0.75 -13.45 16 7 H 0.06 3.13 7.92 -2.91 -0.02 3.10 16 8 C -0.01 -0.53 4.96 84.86 0.42 -0.11 16 9 N -0.91 -51.85 11.29 21.65 0.24 -51.60 16 10 Si 0.96 45.21 29.61 68.60 2.03 47.24 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 13 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 14 C 0.34 14.58 6.44 170.96 1.10 15.68 16 15 N -0.30 -11.59 3.66 -356.71 -1.30 -12.89 16 16 N -0.35 -12.16 10.97 -57.07 -0.63 -12.78 16 17 C 0.31 8.57 7.95 179.61 1.43 9.99 16 18 N -0.57 -10.69 3.38 -756.80 -2.56 -13.25 16 19 C 0.10 1.50 10.53 127.77 1.35 2.85 16 20 C 0.08 0.75 10.08 127.77 1.29 2.03 16 21 S 0.14 3.95 22.56 -56.49 -1.27 2.68 16 22 C 0.22 8.27 5.68 129.99 0.74 9.01 16 23 S -0.59 -25.10 26.81 -56.49 -1.51 -26.61 16 24 H 0.09 2.81 8.14 -2.38 -0.02 2.79 16 25 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.04 1.94 4.19 -2.39 -0.01 1.93 16 29 H 0.08 4.61 5.31 -2.38 -0.01 4.60 16 30 H 0.06 2.93 7.37 -2.39 -0.02 2.92 16 31 H 0.26 14.21 8.31 -92.70 -0.77 13.44 16 32 H 0.10 4.27 8.00 -2.39 -0.02 4.25 16 33 H 0.10 4.47 7.09 -2.39 -0.02 4.45 16 34 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.12 0.85 7.92 -2.39 -0.02 0.83 16 36 H 0.06 1.23 7.62 -2.39 -0.02 1.21 16 37 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.13 0.35 7.79 -2.38 -0.02 0.33 16 39 H 0.07 0.64 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -70.72 347.60 1.82 -68.89 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: 1.06 Total: 8.32 kcal Atomic # 6 Polarization: 29.70 SS G_CDS: 9.19 Total: 38.90 kcal Atomic # 7 Polarization: -113.05 SS G_CDS: -6.15 Total: -119.20 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -1.52 Total: -20.22 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Atomic # 16 Polarization: -21.14 SS G_CDS: -2.79 Total: -23.93 kcal Total: -70.72 1.82 -68.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840153174.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.988 kcal (2) G-P(sol) polarization free energy of solvation -70.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds