Wall clock time and date at job start Tue Mar 31 2020 11:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99535 * 2 1 4 4 H 1.48507 * 109.46981 * 240.00100 * 3 2 1 5 5 H 1.48495 * 109.47726 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47204 * 120.00458 * 3 2 1 7 7 C 1.37868 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99977 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00134 * 359.97438 * 7 2 1 10 10 O 1.42901 * 109.47372 * 180.02562 * 9 7 2 11 11 C 1.42895 * 113.99948 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47036 * 180.02562 * 11 10 9 13 13 S 1.81400 * 109.47145 * 180.02562 * 12 11 10 14 14 O 1.42097 * 109.47307 * 63.60458 * 13 12 11 15 15 C 1.81401 * 103.00097 * 179.97438 * 13 12 11 16 16 C 1.50699 * 109.46970 * 179.97438 * 15 13 12 17 17 C 1.36122 * 120.17334 * 90.00289 * 16 15 13 18 18 C 1.39332 * 120.99046 * 179.97438 * 17 16 15 19 19 C 1.36135 * 120.98740 * 0.02562 * 18 17 16 20 20 C 1.40496 * 119.65103 * 359.97438 * 19 18 17 21 21 C 1.40554 * 121.28772 * 179.97438 * 20 19 18 22 22 C 1.36092 * 119.64993 * 180.02562 * 21 20 19 23 23 C 1.39378 * 120.99616 * 0.02773 * 22 21 20 24 24 C 1.36086 * 120.99225 * 359.97438 * 23 22 21 25 25 C 1.40505 * 120.16872 * 269.71633 * 16 15 13 26 26 H 0.97000 * 120.00055 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46932 * 60.00176 * 9 7 2 28 28 H 1.08995 * 109.47360 * 300.00868 * 9 7 2 29 29 H 1.09001 * 109.47626 * 60.00343 * 11 10 9 30 30 H 1.09001 * 109.47255 * 300.00084 * 11 10 9 31 31 H 1.09001 * 109.47002 * 299.99477 * 12 11 10 32 32 H 1.08993 * 109.46955 * 59.99914 * 12 11 10 33 33 H 1.09007 * 109.46813 * 299.99841 * 15 13 12 34 34 H 1.08998 * 109.47330 * 59.99409 * 15 13 12 35 35 H 1.07999 * 119.50608 * 359.96567 * 17 16 15 36 36 H 1.07999 * 119.50605 * 179.97438 * 18 17 16 37 37 H 1.07993 * 120.17283 * 179.97438 * 19 18 17 38 38 H 1.07993 * 120.17446 * 359.97438 * 21 20 19 39 39 H 1.08000 * 119.50048 * 180.02562 * 22 21 20 40 40 H 1.07997 * 119.50236 * 179.97438 * 23 22 21 41 41 H 1.08003 * 120.17237 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 8 2.1798 -3.5852 -0.0005 11 6 1.5653 -4.8753 -0.0011 12 6 2.6484 -5.9561 -0.0004 13 16 1.8683 -7.5938 -0.0019 14 8 1.1282 -7.7649 -1.2028 15 6 3.2885 -8.7223 -0.0017 16 6 2.7979 -10.1472 -0.0022 17 6 2.5757 -10.7938 -1.1793 18 6 2.1226 -12.1113 -1.1997 19 6 1.8885 -12.7899 -0.0430 20 6 2.1066 -12.1554 1.1915 21 6 1.8756 -12.8234 2.4064 22 6 2.0974 -12.1766 3.5830 23 6 2.5506 -10.8587 3.6034 24 6 2.7850 -10.1804 2.4471 25 6 2.5732 -10.8171 1.2122 26 1 -0.4850 0.8400 0.0004 27 1 0.6242 -2.5567 -0.8903 28 1 0.6248 -2.5571 0.8895 29 1 0.9455 -4.9822 -0.8914 30 1 0.9448 -4.9826 0.8886 31 1 3.2691 -5.8490 -0.8900 32 1 3.2678 -5.8491 0.8900 33 1 3.8932 -8.5455 -0.8912 34 1 3.8922 -8.5465 0.8887 35 1 2.7530 -10.2779 -2.1113 36 1 1.9538 -12.6011 -2.1472 37 1 1.5371 -13.8106 -0.0741 38 1 1.5232 -13.8442 2.4061 39 1 1.9195 -12.6923 4.5151 40 1 2.7182 -10.3685 4.5509 41 1 3.1364 -9.1596 2.4783 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840868343.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:49 Heat of formation + Delta-G solvation = -47.853469 kcal Electronic energy + Delta-G solvation = -22565.634101 eV Core-core repulsion = 19115.840413 eV Total energy + Delta-G solvation = -3449.793688 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.71109 -36.88319 -36.83321 -35.73069 -34.14116 -32.86717 -30.95886 -30.56612 -30.31996 -27.42462 -26.98222 -23.61686 -23.24135 -22.78873 -22.23682 -21.03017 -17.81084 -17.57536 -17.26550 -16.51617 -16.41940 -16.10266 -15.56725 -15.10384 -14.94255 -14.76556 -14.33868 -14.14980 -14.01446 -13.69793 -13.66759 -13.36880 -13.22276 -12.98912 -12.60922 -12.19215 -12.00433 -11.93550 -11.60821 -11.20313 -11.13357 -11.07977 -10.94614 -10.75033 -10.71554 -10.57492 -10.12358 -9.84058 -9.16232 -8.87885 -8.87238 -8.48138 -8.22476 -7.92916 -6.12809 -4.15288 0.19985 0.75911 1.25787 1.89518 2.51947 2.77487 3.30818 3.33594 3.37326 3.65037 3.87076 4.20625 4.33819 4.44712 4.54441 4.61708 4.75450 4.86684 4.89504 4.92176 5.09061 5.14542 5.16017 5.23270 5.23411 5.30863 5.58521 5.59572 5.67315 5.77195 5.85723 5.94241 5.99013 6.07334 6.17942 6.18754 6.28457 6.36432 6.55054 6.73896 7.06301 7.38974 7.76030 8.11359 8.51488 8.96759 9.49441 10.98610 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.026746 B = 0.002204 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.649059 B =12699.146197 C =13270.187392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.910 3.090 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.066 0.934 9 C 0.193 3.807 10 O -0.393 6.393 11 C 0.083 3.917 12 C -0.446 4.446 13 S 1.251 4.749 14 O -0.833 6.833 15 C -0.416 4.416 16 C -0.050 4.050 17 C -0.107 4.107 18 C -0.109 4.109 19 C -0.110 4.110 20 C -0.050 4.050 21 C -0.107 4.107 22 C -0.117 4.117 23 C -0.114 4.114 24 C -0.109 4.109 25 C -0.045 4.045 26 H 0.265 0.735 27 H 0.006 0.994 28 H 0.009 0.991 29 H 0.041 0.959 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.124 0.876 33 H 0.100 0.900 34 H 0.130 0.870 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.869 -28.657 7.276 29.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.737 3.263 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.556 4.556 8 H 0.084 0.916 9 C 0.118 3.882 10 O -0.313 6.313 11 C 0.005 3.995 12 C -0.583 4.583 13 S 1.449 4.551 14 O -0.828 6.828 15 C -0.550 4.550 16 C -0.051 4.051 17 C -0.127 4.127 18 C -0.127 4.127 19 C -0.129 4.129 20 C -0.050 4.050 21 C -0.125 4.125 22 C -0.135 4.135 23 C -0.132 4.132 24 C -0.127 4.127 25 C -0.046 4.046 26 H 0.075 0.925 27 H 0.024 0.976 28 H 0.027 0.973 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.110 0.890 32 H 0.142 0.858 33 H 0.118 0.882 34 H 0.148 0.852 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.144 0.856 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.955 -28.679 7.246 29.844 hybrid contribution 1.467 1.199 -1.926 2.702 sum 5.422 -27.480 5.321 28.511 Atomic orbital electron populations 1.69954 1.06100 1.27363 1.50228 1.24960 0.95013 0.99466 0.95073 0.86369 0.79294 0.81808 0.78837 1.20042 1.21096 1.19954 1.21000 0.94014 0.89305 1.51250 0.91594 1.20262 0.88825 0.83422 0.95667 1.87878 1.35548 1.12618 1.95230 1.21674 0.92781 0.85177 0.99905 1.27772 1.08649 1.13415 1.08429 1.70998 0.86273 0.85577 1.12236 1.93134 1.56359 1.82661 1.50653 1.26784 1.16098 1.03370 1.08718 1.18880 1.00031 0.93389 0.92816 1.20809 0.99177 0.94897 0.97831 1.20829 0.98892 0.94438 0.98558 1.21028 1.00410 0.99858 0.91596 1.18065 0.99660 0.93353 0.93939 1.21019 1.00095 0.99733 0.91623 1.20890 0.99373 0.95124 0.98094 1.20908 0.99075 0.94690 0.98515 1.21155 0.99904 1.00278 0.91372 1.17893 1.00135 0.93430 0.93103 0.92511 0.97590 0.97330 0.94049 0.93288 0.89022 0.85814 0.88158 0.85215 0.86035 0.85813 0.85510 0.85649 0.85966 0.85558 0.84787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -15.40 9.43 -34.44 -0.32 -15.72 16 8 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 9 C 0.19 5.38 5.69 36.01 0.20 5.58 16 10 O -0.39 -9.66 10.33 -35.23 -0.36 -10.02 16 11 C 0.08 1.58 5.95 37.16 0.22 1.80 16 12 C -0.45 -6.21 6.29 37.16 0.23 -5.98 16 13 S 1.25 14.34 13.14 -107.50 -1.41 12.93 16 14 O -0.83 -14.65 18.14 -35.23 -0.64 -15.29 16 15 C -0.42 -3.85 5.58 36.01 0.20 -3.65 16 16 C -0.05 -0.53 5.15 -104.53 -0.54 -1.06 16 17 C -0.11 -1.19 9.59 -39.93 -0.38 -1.57 16 18 C -0.11 -1.03 9.95 -39.93 -0.40 -1.43 16 19 C -0.11 -0.96 9.77 -39.49 -0.39 -1.35 16 20 C -0.05 -0.47 5.74 -106.83 -0.61 -1.09 16 21 C -0.11 -0.80 9.77 -39.48 -0.39 -1.19 16 22 C -0.12 -0.79 9.95 -39.93 -0.40 -1.18 16 23 C -0.11 -0.78 9.95 -39.93 -0.40 -1.17 16 24 C -0.11 -0.85 9.28 -39.49 -0.37 -1.21 16 25 C -0.04 -0.44 5.74 -106.83 -0.61 -1.05 16 26 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 27 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.09 1.38 8.14 -51.92 -0.42 0.96 16 32 H 0.12 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.10 0.96 8.08 -51.92 -0.42 0.54 16 34 H 0.13 0.81 6.43 -51.92 -0.33 0.48 16 35 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 39 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 40 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 41 H 0.13 0.70 6.37 -52.48 -0.33 0.37 16 LS Contribution 363.23 15.07 5.47 5.47 Total: -1.00 -37.93 363.23 -10.97 -48.91 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: -5.71 Total: -3.86 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: -4.04 Total: -28.73 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.74 Total: -26.28 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -1.00 Total: -25.31 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 14.34 SS G_CDS: -1.41 Total: 12.93 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.93 -10.97 -48.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840868343.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.052 kcal (2) G-P(sol) polarization free energy of solvation -37.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds