Wall clock time and date at job start Tue Mar 31 2020 11:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39853 * 119.87617 * 2 1 4 4 C 1.29766 * 121.13549 * 199.43123 * 3 2 1 5 5 C 1.46536 * 119.55726 * 179.84414 * 4 3 2 6 6 O 1.21597 * 119.99899 * 179.73526 * 5 4 3 7 7 O 1.34876 * 120.00024 * 359.73428 * 5 4 3 8 8 C 1.35903 * 117.00197 * 175.08015 * 7 5 4 9 9 C 1.38836 * 120.02154 * 245.69793 * 8 7 5 10 10 C 1.38185 * 120.07920 * 180.29698 * 9 8 7 11 11 C 1.38163 * 120.12308 * 359.95892 * 10 9 8 12 12 C 1.38892 * 120.04356 * 0.04137 * 11 10 9 13 13 O 1.35758 * 120.03813 * 179.97438 * 12 11 10 14 14 C 1.34827 * 116.99906 * 185.94706 * 13 12 11 15 15 H 1.08003 * 119.99994 * 5.54067 * 14 13 12 16 16 C 1.38655 * 119.99965 * 185.54307 * 14 13 12 17 17 N 1.31555 * 119.99736 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00006 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46822 * 90.00241 * 18 16 14 20 20 H 1.48499 * 109.47174 * 210.00071 * 18 16 14 21 21 H 1.48496 * 109.47315 * 330.00143 * 18 16 14 22 22 C 1.38594 * 120.01847 * 65.97727 * 8 7 5 23 23 C 1.50550 * 120.88920 * 359.57741 * 4 3 2 24 24 C 1.53011 * 109.60287 * 326.09261 * 23 4 3 25 25 C 1.34756 * 119.79015 * 179.74305 * 2 1 3 26 26 O 1.21240 * 120.11990 * 359.78055 * 25 2 1 27 27 H 1.08995 * 109.47074 * 270.26021 * 1 2 3 28 28 H 1.09005 * 109.46677 * 30.25046 * 1 2 3 29 29 H 1.08994 * 109.47624 * 150.25407 * 1 2 3 30 30 H 1.07999 * 119.96343 * 0.25067 * 9 8 7 31 31 H 1.08000 * 119.93986 * 179.97438 * 10 9 8 32 32 H 1.08006 * 119.97584 * 180.02562 * 11 10 9 33 33 H 0.97005 * 119.99705 * 179.97438 * 17 16 14 34 34 H 1.07995 * 120.06473 * 359.69494 * 22 8 7 35 35 H 1.08999 * 109.44759 * 86.13617 * 23 4 3 36 36 H 1.09003 * 109.44445 * 206.05054 * 23 4 3 37 37 H 1.08995 * 109.51297 * 167.38614 * 24 23 4 38 38 H 1.09003 * 109.51291 * 287.53302 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1616 1.2127 0.0000 4 6 3.4041 1.2727 -0.3695 5 6 4.0998 2.5624 -0.3594 6 8 5.2654 2.6271 -0.6994 7 8 3.4471 3.6776 0.0272 8 6 4.1765 4.8212 0.1122 9 6 4.3782 5.4264 1.3453 10 6 5.1145 6.5925 1.4323 11 6 5.6527 7.1593 0.2931 12 6 5.4541 6.5582 -0.9432 13 8 5.9826 7.1156 -2.0626 14 6 5.6507 6.5526 -3.2419 15 1 4.9229 5.7553 -3.2738 16 6 6.2437 6.9974 -4.4137 17 7 7.1305 7.9682 -4.3747 18 14 5.7843 6.2170 -6.0475 19 1 4.6383 6.9510 -6.6418 20 1 6.9456 6.2813 -6.9707 21 1 5.4038 4.7983 -5.8289 22 6 4.7145 5.3872 -1.0328 23 6 4.1423 0.0342 -0.8028 24 6 3.6422 -1.1687 -0.0003 25 6 2.1345 -1.1695 0.0052 26 8 1.5267 -2.2184 0.0140 27 1 -0.3633 0.0047 1.0276 28 1 -0.3633 0.8878 -0.5178 29 1 -0.3634 -0.8922 -0.5098 30 1 3.9586 4.9857 2.2375 31 1 5.2697 7.0616 2.3927 32 1 6.2282 8.0706 0.3639 33 1 7.5457 8.2791 -5.1944 34 1 4.5590 4.9176 -1.9929 35 1 3.9675 -0.1397 -1.8646 36 1 5.2099 0.1684 -0.6284 37 1 4.0050 -2.0885 -0.4588 38 1 4.0100 -1.1017 1.0235 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841342290.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:32 Heat of formation + Delta-G solvation = -54.370832 kcal Electronic energy + Delta-G solvation = -25716.828029 eV Core-core repulsion = 21720.458513 eV Total energy + Delta-G solvation = -3996.369516 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.35129 -40.72681 -38.90117 -37.79443 -37.06832 -35.82290 -34.58658 -32.35869 -32.08563 -29.80603 -29.00642 -28.33492 -25.71156 -25.34219 -24.71035 -22.65157 -21.71122 -21.00957 -19.03980 -18.40433 -18.11650 -17.61302 -17.28103 -16.69621 -16.19189 -16.03719 -15.81976 -15.17787 -14.89648 -14.48542 -14.34369 -13.98354 -13.73521 -13.67462 -13.62521 -13.16820 -12.97368 -12.76400 -12.75755 -12.49267 -12.00236 -11.83161 -11.67282 -11.37409 -11.34323 -11.11478 -10.99145 -10.71371 -10.53538 -10.40668 -10.12284 -9.59832 -9.18707 -8.90810 -8.21939 -7.40359 -6.51874 -4.11078 0.37526 1.54603 1.78159 1.96215 2.16075 2.60742 2.74388 3.09706 3.10792 3.15610 3.53364 3.91579 4.01547 4.24361 4.42491 4.48939 4.59810 4.81422 5.03016 5.05109 5.06491 5.13576 5.21116 5.29027 5.35326 5.54256 5.60484 5.70241 5.74133 5.93687 6.03896 6.15820 6.50211 6.70330 6.92339 7.02691 7.07668 7.12183 7.26956 7.40853 7.50866 7.89541 7.94373 8.93243 9.58955 10.65512 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.013870 B = 0.003467 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.190630 B = 8075.333289 C = 9368.036700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.460 5.460 3 N -0.167 5.167 4 C 0.095 3.905 5 C 0.518 3.482 6 O -0.456 6.456 7 O -0.272 6.272 8 C 0.114 3.886 9 C -0.207 4.207 10 C -0.065 4.065 11 C -0.185 4.185 12 C 0.163 3.837 13 O -0.169 6.169 14 C -0.392 4.392 15 H 0.091 0.909 16 C 0.042 3.958 17 N -0.859 5.859 18 Si 0.940 3.060 19 H -0.272 1.272 20 H -0.276 1.276 21 H -0.267 1.267 22 C -0.228 4.228 23 C -0.106 4.106 24 C -0.142 4.142 25 C 0.496 3.504 26 O -0.514 6.514 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.272 0.728 34 H 0.133 0.867 35 H 0.107 0.893 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.429 -14.319 8.514 18.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.282 5.282 3 N 0.018 4.982 4 C -0.098 4.098 5 C 0.358 3.642 6 O -0.336 6.336 7 O -0.185 6.185 8 C 0.073 3.927 9 C -0.226 4.226 10 C -0.083 4.083 11 C -0.205 4.205 12 C 0.109 3.891 13 O -0.072 6.072 14 C -0.468 4.468 15 H 0.108 0.892 16 C -0.163 4.163 17 N -0.493 5.493 18 Si 0.765 3.235 19 H -0.197 1.197 20 H -0.201 1.201 21 H -0.192 1.192 22 C -0.248 4.248 23 C -0.146 4.146 24 C -0.182 4.182 25 C 0.284 3.716 26 O -0.386 6.386 27 H 0.088 0.912 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.135 0.865 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.081 0.919 34 H 0.151 0.849 35 H 0.125 0.875 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.879 -14.133 8.484 18.723 hybrid contribution 0.263 -0.875 -1.077 1.412 sum -8.616 -15.008 7.407 18.824 Atomic orbital electron populations 1.21782 0.74437 1.04307 1.03418 1.49068 1.07778 1.01212 1.70103 1.74907 1.08169 1.07080 1.07996 1.23747 0.92478 0.94005 0.99566 1.20254 0.84852 0.83417 0.75678 1.91020 1.15775 1.85550 1.41284 1.84706 1.40142 1.15672 1.78002 1.18284 0.96181 0.84422 0.93823 1.20419 1.06904 1.00348 0.94961 1.20490 0.95892 0.94529 0.97378 1.20351 1.07097 1.02729 0.90298 1.19127 0.91365 0.90206 0.88441 1.84017 1.61163 1.50234 1.11760 1.21306 1.24372 1.20075 0.81080 0.89184 1.25287 0.95550 0.96379 0.99054 1.70032 1.25117 1.25088 1.29028 0.85720 0.78404 0.79328 0.80083 1.19733 1.20081 1.19155 1.21231 1.05692 0.99536 0.98354 1.20966 1.03289 0.88514 1.01801 1.21882 0.90761 1.01188 1.04338 1.21363 0.91443 0.83329 0.75483 1.90741 1.70339 1.30206 1.47341 0.91224 0.89434 0.89237 0.86513 0.85848 0.85814 0.91856 0.84936 0.87487 0.86076 0.85816 0.87079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.84 10.73 59.85 0.64 1.48 16 2 N -0.46 -4.97 3.86 -67.07 -0.26 -5.23 16 3 N -0.17 -2.03 11.14 34.87 0.39 -1.64 16 4 C 0.09 1.14 6.77 -80.19 -0.54 0.59 16 5 C 0.52 8.15 7.72 34.07 0.26 8.42 16 6 O -0.46 -8.33 15.35 -19.34 -0.30 -8.63 16 7 O -0.27 -4.72 9.83 -25.18 -0.25 -4.97 16 8 C 0.11 2.21 5.47 -39.23 -0.21 2.00 16 9 C -0.21 -3.60 9.99 -39.38 -0.39 -3.99 16 10 C -0.06 -1.10 10.03 -39.63 -0.40 -1.50 16 11 C -0.19 -3.77 9.99 -39.37 -0.39 -4.16 16 12 C 0.16 3.91 6.64 -39.13 -0.26 3.65 16 13 O -0.17 -4.75 9.76 0.03 0.00 -4.75 16 14 C -0.39 -10.92 9.44 30.89 0.29 -10.63 16 15 H 0.09 2.36 5.30 -52.48 -0.28 2.08 16 16 C 0.04 1.15 5.49 -17.52 -0.10 1.06 16 17 N -0.86 -24.81 13.67 55.48 0.76 -24.05 16 18 Si 0.94 20.41 29.55 -169.99 -5.02 15.39 16 19 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 20 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 22 C -0.23 -5.11 7.99 -39.24 -0.31 -5.43 16 23 C -0.11 -0.92 5.85 -27.95 -0.16 -1.08 16 24 C -0.14 -1.07 6.20 -27.85 -0.17 -1.25 16 25 C 0.50 5.32 7.55 -10.96 -0.08 5.24 16 26 O -0.51 -6.81 16.67 5.59 0.09 -6.71 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.09 0.70 7.41 -51.93 -0.38 0.32 16 30 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 31 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.12 2.36 8.06 -52.48 -0.42 1.93 16 33 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.13 3.08 5.72 -52.49 -0.30 2.78 16 35 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.12 0.98 7.54 -51.93 -0.39 0.59 16 37 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 340.18 15.07 5.13 5.13 Total: -1.00 -33.57 340.18 -5.17 -38.73 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -3.87 Total: 2.33 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -1.83 Total: -5.60 kcal Atomic # 7 Polarization: -31.81 SS G_CDS: 0.89 Total: -30.92 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.45 Total: -25.06 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.57 -5.17 -38.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841342290.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.636 kcal (2) G-P(sol) polarization free energy of solvation -33.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds