Wall clock time and date at job start Tue Mar 31 2020 11:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39853 * 119.87617 * 2 1 4 4 C 1.29766 * 121.13549 * 199.43123 * 3 2 1 5 5 C 1.46536 * 119.55726 * 179.84414 * 4 3 2 6 6 O 1.21597 * 119.99899 * 179.73526 * 5 4 3 7 7 O 1.34876 * 120.00024 * 359.73428 * 5 4 3 8 8 C 1.35903 * 117.00197 * 175.08015 * 7 5 4 9 9 C 1.38836 * 120.02154 * 245.69793 * 8 7 5 10 10 C 1.38185 * 120.07920 * 180.29698 * 9 8 7 11 11 C 1.38163 * 120.12308 * 359.95892 * 10 9 8 12 12 C 1.38892 * 120.04356 * 0.04137 * 11 10 9 13 13 O 1.35758 * 120.03813 * 179.97438 * 12 11 10 14 14 C 1.34827 * 116.99906 * 185.94706 * 13 12 11 15 15 H 1.08003 * 119.99994 * 5.54067 * 14 13 12 16 16 C 1.38655 * 119.99965 * 185.54307 * 14 13 12 17 17 N 1.31555 * 119.99736 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00006 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46822 * 90.00241 * 18 16 14 20 20 H 1.48499 * 109.47174 * 210.00071 * 18 16 14 21 21 H 1.48496 * 109.47315 * 330.00143 * 18 16 14 22 22 C 1.38594 * 120.01847 * 65.97727 * 8 7 5 23 23 C 1.50550 * 120.88920 * 359.57741 * 4 3 2 24 24 C 1.53011 * 109.60287 * 326.09261 * 23 4 3 25 25 C 1.34756 * 119.79015 * 179.74305 * 2 1 3 26 26 O 1.21240 * 120.11990 * 359.78055 * 25 2 1 27 27 H 1.08995 * 109.47074 * 270.26021 * 1 2 3 28 28 H 1.09005 * 109.46677 * 30.25046 * 1 2 3 29 29 H 1.08994 * 109.47624 * 150.25407 * 1 2 3 30 30 H 1.07999 * 119.96343 * 0.25067 * 9 8 7 31 31 H 1.08000 * 119.93986 * 179.97438 * 10 9 8 32 32 H 1.08006 * 119.97584 * 180.02562 * 11 10 9 33 33 H 0.97005 * 119.99705 * 179.97438 * 17 16 14 34 34 H 1.07995 * 120.06473 * 359.69494 * 22 8 7 35 35 H 1.08999 * 109.44759 * 86.13617 * 23 4 3 36 36 H 1.09003 * 109.44445 * 206.05054 * 23 4 3 37 37 H 1.08995 * 109.51297 * 167.38614 * 24 23 4 38 38 H 1.09003 * 109.51291 * 287.53302 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1616 1.2127 0.0000 4 6 3.4041 1.2727 -0.3695 5 6 4.0998 2.5624 -0.3594 6 8 5.2654 2.6271 -0.6994 7 8 3.4471 3.6776 0.0272 8 6 4.1765 4.8212 0.1122 9 6 4.3782 5.4264 1.3453 10 6 5.1145 6.5925 1.4323 11 6 5.6527 7.1593 0.2931 12 6 5.4541 6.5582 -0.9432 13 8 5.9826 7.1156 -2.0626 14 6 5.6507 6.5526 -3.2419 15 1 4.9229 5.7553 -3.2738 16 6 6.2437 6.9974 -4.4137 17 7 7.1305 7.9682 -4.3747 18 14 5.7843 6.2170 -6.0475 19 1 4.6383 6.9510 -6.6418 20 1 6.9456 6.2813 -6.9707 21 1 5.4038 4.7983 -5.8289 22 6 4.7145 5.3872 -1.0328 23 6 4.1423 0.0342 -0.8028 24 6 3.6422 -1.1687 -0.0003 25 6 2.1345 -1.1695 0.0052 26 8 1.5267 -2.2184 0.0140 27 1 -0.3633 0.0047 1.0276 28 1 -0.3633 0.8878 -0.5178 29 1 -0.3634 -0.8922 -0.5098 30 1 3.9586 4.9857 2.2375 31 1 5.2697 7.0616 2.3927 32 1 6.2282 8.0706 0.3639 33 1 7.5457 8.2791 -5.1944 34 1 4.5590 4.9176 -1.9929 35 1 3.9675 -0.1397 -1.8646 36 1 5.2099 0.1684 -0.6284 37 1 4.0050 -2.0885 -0.4588 38 1 4.0100 -1.1017 1.0235 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841342290.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:31 Heat of formation + Delta-G solvation = -76.364401 kcal Electronic energy + Delta-G solvation = -25717.781742 eV Core-core repulsion = 21720.458513 eV Total energy + Delta-G solvation = -3997.323229 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.57360 -41.74937 -40.56361 -38.99292 -38.34083 -37.41080 -35.37908 -34.32838 -32.94746 -31.34753 -30.64506 -29.17007 -27.49123 -26.51843 -25.58571 -23.92191 -23.29966 -22.33829 -20.27701 -20.12609 -19.30162 -18.87334 -18.18321 -17.76674 -17.63144 -17.25214 -16.87672 -16.82605 -16.10737 -16.02577 -15.61048 -15.58092 -15.26776 -14.72999 -14.66332 -14.41279 -14.30036 -13.75778 -13.68142 -13.48407 -13.35588 -13.19894 -12.98311 -12.74989 -12.70019 -12.55571 -12.25737 -12.17925 -12.00265 -11.94468 -11.49239 -10.99168 -10.84105 -10.04184 -9.78509 -9.13992 -8.51738 -6.20517 -0.65757 0.11576 0.57007 0.79931 1.05191 1.31938 1.40194 1.48880 1.49928 1.56930 2.14018 2.65312 2.76184 3.07894 3.27258 3.32726 3.43733 3.72112 3.86423 4.02027 4.03790 4.19797 4.33078 4.40099 4.44515 4.51096 4.62546 4.65410 4.72296 4.74336 4.86192 4.95323 4.96336 5.03006 5.24025 5.42068 5.50392 5.55730 5.93898 5.95306 6.26036 6.48643 6.63738 6.92428 7.68116 8.70640 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.013870 B = 0.003467 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.190630 B = 8075.333289 C = 9368.036700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.460 5.460 3 N -0.174 5.174 4 C 0.094 3.906 5 C 0.521 3.479 6 O -0.485 6.485 7 O -0.273 6.273 8 C 0.108 3.892 9 C -0.184 4.184 10 C -0.046 4.046 11 C -0.192 4.192 12 C 0.127 3.873 13 O -0.220 6.220 14 C -0.415 4.415 15 H 0.092 0.908 16 C -0.015 4.015 17 N -0.913 5.913 18 Si 1.013 2.987 19 H -0.260 1.260 20 H -0.266 1.266 21 H -0.259 1.259 22 C -0.244 4.244 23 C -0.101 4.101 24 C -0.133 4.133 25 C 0.492 3.508 26 O -0.541 6.541 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.159 0.841 31 H 0.177 0.823 32 H 0.131 0.869 33 H 0.275 0.725 34 H 0.111 0.889 35 H 0.118 0.882 36 H 0.129 0.871 37 H 0.147 0.853 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.569 -16.204 10.394 21.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.283 5.283 3 N 0.011 4.989 4 C -0.098 4.098 5 C 0.362 3.638 6 O -0.367 6.367 7 O -0.187 6.187 8 C 0.067 3.933 9 C -0.203 4.203 10 C -0.064 4.064 11 C -0.212 4.212 12 C 0.076 3.924 13 O -0.127 6.127 14 C -0.491 4.491 15 H 0.109 0.891 16 C -0.214 4.214 17 N -0.550 5.550 18 Si 0.832 3.168 19 H -0.184 1.184 20 H -0.190 1.190 21 H -0.183 1.183 22 C -0.264 4.264 23 C -0.141 4.141 24 C -0.172 4.172 25 C 0.282 3.718 26 O -0.416 6.416 27 H 0.099 0.901 28 H 0.114 0.886 29 H 0.111 0.889 30 H 0.177 0.823 31 H 0.194 0.806 32 H 0.149 0.851 33 H 0.084 0.916 34 H 0.129 0.871 35 H 0.135 0.865 36 H 0.147 0.853 37 H 0.165 0.835 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.052 -16.035 10.417 21.603 hybrid contribution 0.442 -0.380 -1.294 1.420 sum -9.609 -16.415 9.123 21.096 Atomic orbital electron populations 1.21987 0.73321 1.04906 1.04406 1.49266 1.08530 1.00834 1.69632 1.74812 1.08319 1.08139 1.07650 1.23610 0.92799 0.93048 1.00296 1.20804 0.84722 0.83808 0.74426 1.91014 1.17187 1.85925 1.42571 1.84719 1.40114 1.15595 1.78250 1.18461 0.95767 0.85340 0.93748 1.21019 1.04492 0.99434 0.95305 1.21074 0.93471 0.93664 0.98191 1.20731 1.07250 1.03108 0.90070 1.19707 0.92388 0.91489 0.88807 1.83971 1.63680 1.52278 1.12727 1.21670 1.25081 1.20424 0.81948 0.89066 1.26499 0.95306 0.96815 1.02778 1.70155 1.27275 1.27372 1.30240 0.84678 0.78629 0.78609 0.74894 1.18450 1.19026 1.18276 1.21181 1.06814 0.99602 0.98787 1.21065 1.03310 0.87167 1.02523 1.21961 0.88334 1.01499 1.05449 1.21915 0.92688 0.82715 0.74507 1.90735 1.71189 1.30957 1.48671 0.90085 0.88596 0.88890 0.82345 0.80573 0.85129 0.91576 0.87087 0.86454 0.85267 0.83494 0.85380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.39 10.73 127.77 1.37 2.76 16 2 N -0.46 -9.05 3.86 -484.52 -1.87 -10.92 16 3 N -0.17 -3.89 11.14 -43.60 -0.49 -4.37 16 4 C 0.09 2.10 6.77 44.98 0.30 2.40 16 5 C 0.52 15.90 7.72 69.99 0.54 16.44 16 6 O -0.49 -17.65 15.35 19.52 0.30 -17.35 16 7 O -0.27 -9.14 9.83 -1.38 -0.01 -9.16 16 8 C 0.11 4.08 5.47 22.50 0.12 4.20 16 9 C -0.18 -5.70 9.99 22.40 0.22 -5.47 16 10 C -0.05 -1.40 10.03 22.24 0.22 -1.18 16 11 C -0.19 -7.70 9.99 22.41 0.22 -7.48 16 12 C 0.13 6.32 6.64 22.56 0.15 6.47 16 13 O -0.22 -13.21 9.76 -22.80 -0.22 -13.43 16 14 C -0.42 -24.52 9.44 67.92 0.64 -23.88 16 15 H 0.09 5.11 5.30 -2.91 -0.02 5.09 16 16 C -0.02 -0.88 5.49 84.83 0.47 -0.41 16 17 N -0.91 -55.52 13.67 21.61 0.30 -55.23 16 18 Si 1.01 43.16 29.55 68.60 2.03 45.19 16 19 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 20 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 21 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 22 C -0.24 -11.24 7.99 22.49 0.18 -11.07 16 23 C -0.10 -1.52 5.85 29.80 0.17 -1.35 16 24 C -0.13 -1.62 6.20 29.87 0.19 -1.44 16 25 C 0.49 9.48 7.55 87.68 0.66 10.14 16 26 O -0.54 -13.37 16.67 -2.90 -0.05 -13.42 16 27 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.09 1.33 7.41 -2.39 -0.02 1.32 16 30 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 31 H 0.18 3.56 8.06 -2.91 -0.02 3.53 16 32 H 0.13 4.96 8.06 -2.91 -0.02 4.93 16 33 H 0.28 15.25 8.31 -92.70 -0.77 14.48 16 34 H 0.11 5.49 5.72 -2.91 -0.02 5.47 16 35 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.13 1.79 7.54 -2.39 -0.02 1.77 16 37 H 0.15 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -78.32 340.18 6.56 -71.76 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 1.11 Total: 16.78 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: 5.47 Total: -9.85 kcal Atomic # 7 Polarization: -68.46 SS G_CDS: -2.06 Total: -70.52 kcal Atomic # 8 Polarization: -53.37 SS G_CDS: 0.02 Total: -53.36 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -78.32 6.56 -71.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841342290.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.605 kcal (2) G-P(sol) polarization free energy of solvation -78.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds