Wall clock time and date at job start Tue Mar 31 2020 11:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99902 * 2 1 4 4 H 1.48502 * 109.46879 * 239.99993 * 3 2 1 5 5 H 1.48504 * 109.47180 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47372 * 119.99484 * 3 2 1 7 7 C 1.37873 * 120.00333 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00232 * 185.22174 * 7 2 1 9 9 C 1.50702 * 119.99518 * 4.94622 * 7 2 1 10 10 O 1.45197 * 112.85109 * 295.54917 * 9 7 2 11 11 C 1.34230 * 117.00106 * 296.80834 * 10 9 7 12 12 O 1.20823 * 119.99996 * 5.11114 * 11 10 9 13 13 C 1.50704 * 119.99876 * 185.11902 * 11 10 9 14 14 H 1.09001 * 109.30855 * 334.99454 * 13 11 10 15 15 S 1.81325 * 109.31607 * 94.61351 * 13 11 10 16 16 C 1.82083 * 100.82615 * 166.18604 * 15 13 11 17 17 C 1.52149 * 107.71387 * 295.85406 * 16 15 13 18 18 C 1.50231 * 113.59384 * 52.78629 * 17 16 15 19 19 C 1.39953 * 114.45522 * 159.80992 * 18 17 16 20 20 C 1.37448 * 121.52867 * 179.32184 * 19 18 17 21 21 C 1.38286 * 119.51210 * 359.93532 * 20 19 18 22 22 C 1.37572 * 119.26135 * 0.34891 * 21 20 19 23 23 C 1.36689 * 126.67780 * 339.45479 * 18 17 16 24 24 C 1.53781 * 113.61094 * 164.35583 * 9 7 2 25 25 C 1.53954 * 87.02074 * 220.04703 * 24 9 7 26 26 C 1.53776 * 113.61458 * 66.74874 * 9 7 2 27 27 H 0.97000 * 120.00081 * 5.00462 * 1 2 3 28 28 H 1.08997 * 109.80728 * 55.40272 * 16 15 13 29 29 H 1.08998 * 109.81122 * 176.23999 * 16 15 13 30 30 H 1.08998 * 108.65852 * 173.85202 * 17 16 15 31 31 H 1.09006 * 108.65640 * 291.72588 * 17 16 15 32 32 H 1.08002 * 119.23244 * 359.30171 * 19 18 17 33 33 H 1.08000 * 120.24254 * 179.97438 * 20 19 18 34 34 H 1.08004 * 120.37243 * 180.33002 * 21 20 19 35 35 H 1.08000 * 119.32941 * 179.97438 * 22 21 20 36 36 H 1.08999 * 113.61623 * 334.56723 * 24 9 7 37 37 H 1.09006 * 113.61749 * 105.47155 * 24 9 7 38 38 H 1.09000 * 113.53740 * 270.81102 * 25 24 9 39 39 H 1.09000 * 113.74745 * 139.94359 * 25 24 9 40 40 H 1.08995 * 113.61660 * 254.52645 * 26 9 7 41 41 H 1.09000 * 113.61638 * 25.34865 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0811 -1.1959 0.0856 9 6 1.2553 -2.4967 -0.1114 10 8 0.3859 -2.7465 1.0244 11 6 0.9741 -2.8866 2.2228 12 8 2.1643 -2.7120 2.3357 13 6 0.1499 -3.2618 3.4274 14 1 -0.8830 -2.9522 3.2681 15 16 0.2086 -5.0594 3.6580 16 6 -0.4623 -5.2101 5.3440 17 6 0.5069 -4.5185 6.2913 18 6 0.8376 -3.1091 5.8898 19 6 1.3428 -2.3150 6.9256 20 6 1.7061 -1.0061 6.7161 21 6 1.5730 -0.4558 5.4544 22 6 1.0715 -1.2290 4.4330 23 6 0.6987 -2.5607 4.6455 24 6 2.1502 -3.6926 -0.4769 25 6 1.0061 -4.1664 -1.3917 26 6 0.5648 -2.6953 -1.4710 27 1 -0.4850 0.8368 -0.0733 28 1 -1.4384 -4.7281 5.3976 29 1 -0.5547 -6.2625 5.6121 30 1 0.0682 -4.5031 7.2890 31 1 1.4304 -5.0964 6.3284 32 1 1.4492 -2.7405 7.9126 33 1 2.0932 -0.4119 7.5306 34 1 1.8592 0.5697 5.2730 35 1 0.9667 -0.8002 3.4474 36 1 3.0541 -3.4124 -1.0178 37 1 2.3472 -4.3626 0.3600 38 1 0.2858 -4.8118 -0.8890 39 1 1.3455 -4.5725 -2.3446 40 1 -0.5163 -2.5613 -1.4355 41 1 1.0336 -2.1408 -2.2840 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842352230.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:51 Heat of formation + Delta-G solvation = -31.510347 kcal Electronic energy + Delta-G solvation = -25232.119160 eV Core-core repulsion = 21783.034163 eV Total energy + Delta-G solvation = -3449.084997 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.98414 -39.04424 -37.02372 -34.43072 -34.11651 -32.50108 -32.35831 -29.65578 -27.82231 -26.42667 -24.57933 -24.09708 -22.86879 -22.23477 -20.69367 -20.11134 -18.21558 -17.24614 -16.57566 -16.46682 -15.78100 -15.27963 -15.15916 -14.96397 -14.78351 -14.46715 -14.22644 -13.69470 -13.35080 -13.23759 -12.99529 -12.87876 -12.55075 -12.18853 -11.96601 -11.54841 -11.47424 -11.34549 -11.13623 -11.08390 -10.88271 -10.77138 -10.50689 -10.14375 -9.99201 -9.94105 -9.88887 -9.37192 -8.81282 -8.57682 -8.52595 -8.46971 -8.39136 -7.60548 -6.11022 -4.21857 1.34073 1.55661 1.61557 2.40181 3.26041 3.30941 3.35755 3.52997 3.72169 4.00613 4.35397 4.52364 4.64334 4.78856 5.03896 5.13769 5.17384 5.26714 5.34680 5.45583 5.53080 5.61122 5.65519 5.72132 5.78716 5.81651 5.84475 6.07079 6.14750 6.25400 6.41928 6.46374 6.57610 6.67481 6.77416 6.80439 6.82863 7.14537 7.17171 7.25769 7.49506 7.76115 7.86034 8.27841 8.80625 9.11140 9.47260 10.93261 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.013212 B = 0.006120 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.714809 B = 4574.236649 C = 6216.258330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.075 3.925 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.066 0.934 9 C 0.234 3.766 10 O -0.328 6.328 11 C 0.485 3.515 12 O -0.480 6.480 13 C -0.020 4.020 14 H 0.123 0.877 15 S -0.207 6.207 16 C -0.088 4.088 17 C -0.078 4.078 18 C -0.071 4.071 19 C -0.131 4.131 20 C -0.114 4.114 21 C -0.121 4.121 22 C -0.082 4.082 23 C -0.063 4.063 24 C -0.153 4.153 25 C -0.152 4.152 26 C -0.095 4.095 27 H 0.263 0.737 28 H 0.089 0.911 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.131 0.869 36 H 0.081 0.919 37 H 0.051 0.949 38 H 0.069 0.931 39 H 0.053 0.947 40 H 0.063 0.937 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.375 -6.797 11.477 13.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.130 4.130 3 Si 0.714 3.286 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.554 4.554 8 H 0.084 0.916 9 C 0.200 3.800 10 O -0.244 6.244 11 C 0.323 3.677 12 O -0.367 6.367 13 C -0.149 4.149 14 H 0.140 0.860 15 S 0.022 5.978 16 C -0.237 4.237 17 C -0.116 4.116 18 C -0.071 4.071 19 C -0.149 4.149 20 C -0.132 4.132 21 C -0.140 4.140 22 C -0.101 4.101 23 C -0.065 4.065 24 C -0.191 4.191 25 C -0.189 4.189 26 C -0.133 4.133 27 H 0.072 0.928 28 H 0.108 0.892 29 H 0.131 0.869 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.149 0.851 36 H 0.100 0.900 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.840 -7.460 10.785 13.242 hybrid contribution 0.116 2.047 0.769 2.190 sum -1.724 -5.413 11.554 12.875 Atomic orbital electron populations 1.70050 1.05754 1.27146 1.47148 1.25053 0.94819 0.99137 0.93994 0.86736 0.79878 0.82939 0.79085 1.19903 1.21137 1.19966 1.21213 0.93498 0.89381 1.51354 0.91605 1.20663 0.86294 0.92183 0.80809 1.86426 1.43212 1.79434 1.15308 1.21534 0.86583 0.75302 0.84242 1.90613 1.15796 1.44739 1.85569 1.21838 1.03992 0.95257 0.93836 0.85951 1.87151 1.85448 1.05072 1.20169 1.23357 1.01333 1.04852 0.94115 1.20403 0.99963 0.92473 0.98791 1.19191 1.00111 0.95416 0.92407 1.21169 1.01142 0.94372 0.98208 1.20970 0.99791 0.95347 0.97091 1.21030 0.99852 1.00126 0.92956 1.21602 0.95642 0.92833 1.00009 1.18899 1.01279 0.94456 0.91842 1.23485 0.97745 0.99086 0.98795 1.23026 0.98964 0.98001 0.98942 1.22726 1.00677 0.92918 0.96958 0.92759 0.89247 0.86853 0.89908 0.89448 0.86332 0.86113 0.85831 0.85122 0.90036 0.93030 0.91235 0.92834 0.91840 0.89841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.89 12.79 55.43 0.71 -23.18 16 2 C 0.08 2.04 5.38 -17.82 -0.10 1.95 16 3 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.21 7.17 -34.44 -0.25 -14.46 16 8 H 0.07 1.87 7.82 -52.49 -0.41 1.46 16 9 C 0.23 5.90 0.33 -90.96 -0.03 5.87 16 10 O -0.33 -8.29 9.82 -39.26 -0.39 -8.67 16 11 C 0.49 11.38 5.01 36.01 0.18 11.56 16 12 O -0.48 -12.42 13.85 -18.75 -0.26 -12.68 16 13 C -0.02 -0.38 3.10 -28.94 -0.09 -0.47 16 14 H 0.12 2.23 8.14 -51.92 -0.42 1.81 16 15 S -0.21 -3.37 21.67 -107.50 -2.33 -5.70 16 16 C -0.09 -0.98 6.57 36.72 0.24 -0.74 16 17 C -0.08 -0.87 5.29 -28.54 -0.15 -1.02 16 18 C -0.07 -1.04 5.73 -104.77 -0.60 -1.64 16 19 C -0.13 -1.71 9.39 -39.23 -0.37 -2.08 16 20 C -0.11 -1.55 10.05 -39.85 -0.40 -1.95 16 21 C -0.12 -1.97 10.07 -39.81 -0.40 -2.37 16 22 C -0.08 -1.57 8.30 -39.20 -0.33 -1.89 16 23 C -0.06 -1.13 5.20 -104.47 -0.54 -1.67 16 24 C -0.15 -3.45 6.96 -25.83 -0.18 -3.63 16 25 C -0.15 -3.02 8.03 -25.82 -0.21 -3.23 16 26 C -0.10 -2.17 7.09 -25.92 -0.18 -2.35 16 27 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 28 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 0.69 7.97 -51.93 -0.41 0.28 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.12 1.18 7.94 -52.49 -0.42 0.76 16 33 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 34 H 0.12 1.82 8.06 -52.48 -0.42 1.40 16 35 H 0.13 2.94 6.89 -52.49 -0.36 2.57 16 36 H 0.08 1.78 8.09 -51.93 -0.42 1.36 16 37 H 0.05 1.18 7.54 -51.93 -0.39 0.79 16 38 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 1.49 8.14 -51.93 -0.42 1.06 16 41 H 0.08 1.88 8.09 -51.93 -0.42 1.46 16 LS Contribution 348.43 15.07 5.25 5.25 Total: -1.00 -30.88 348.43 -11.21 -42.09 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -5.77 Total: 4.93 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: -3.40 Total: -18.12 kcal Atomic # 7 Polarization: -23.89 SS G_CDS: 0.71 Total: -23.18 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.65 Total: -21.35 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -3.37 SS G_CDS: -2.33 Total: -5.70 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.88 -11.21 -42.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842352230.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.580 kcal (2) G-P(sol) polarization free energy of solvation -30.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds