Wall clock time and date at job start Tue Mar 31 2020 11:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99902 * 2 1 4 4 H 1.48502 * 109.46879 * 239.99993 * 3 2 1 5 5 H 1.48504 * 109.47180 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47372 * 119.99484 * 3 2 1 7 7 C 1.37873 * 120.00333 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00232 * 185.22174 * 7 2 1 9 9 C 1.50702 * 119.99518 * 4.94622 * 7 2 1 10 10 O 1.45197 * 112.85109 * 295.54917 * 9 7 2 11 11 C 1.34230 * 117.00106 * 296.80834 * 10 9 7 12 12 O 1.20823 * 119.99996 * 5.11114 * 11 10 9 13 13 C 1.50704 * 119.99876 * 185.11902 * 11 10 9 14 14 H 1.09001 * 109.30855 * 334.99454 * 13 11 10 15 15 S 1.81325 * 109.31607 * 94.61351 * 13 11 10 16 16 C 1.82083 * 100.82615 * 166.18604 * 15 13 11 17 17 C 1.52149 * 107.71387 * 295.85406 * 16 15 13 18 18 C 1.50231 * 113.59384 * 52.78629 * 17 16 15 19 19 C 1.39953 * 114.45522 * 159.80992 * 18 17 16 20 20 C 1.37448 * 121.52867 * 179.32184 * 19 18 17 21 21 C 1.38286 * 119.51210 * 359.93532 * 20 19 18 22 22 C 1.37572 * 119.26135 * 0.34891 * 21 20 19 23 23 C 1.36689 * 126.67780 * 339.45479 * 18 17 16 24 24 C 1.53781 * 113.61094 * 164.35583 * 9 7 2 25 25 C 1.53954 * 87.02074 * 220.04703 * 24 9 7 26 26 C 1.53776 * 113.61458 * 66.74874 * 9 7 2 27 27 H 0.97000 * 120.00081 * 5.00462 * 1 2 3 28 28 H 1.08997 * 109.80728 * 55.40272 * 16 15 13 29 29 H 1.08998 * 109.81122 * 176.23999 * 16 15 13 30 30 H 1.08998 * 108.65852 * 173.85202 * 17 16 15 31 31 H 1.09006 * 108.65640 * 291.72588 * 17 16 15 32 32 H 1.08002 * 119.23244 * 359.30171 * 19 18 17 33 33 H 1.08000 * 120.24254 * 179.97438 * 20 19 18 34 34 H 1.08004 * 120.37243 * 180.33002 * 21 20 19 35 35 H 1.08000 * 119.32941 * 179.97438 * 22 21 20 36 36 H 1.08999 * 113.61623 * 334.56723 * 24 9 7 37 37 H 1.09006 * 113.61749 * 105.47155 * 24 9 7 38 38 H 1.09000 * 113.53740 * 270.81102 * 25 24 9 39 39 H 1.09000 * 113.74745 * 139.94359 * 25 24 9 40 40 H 1.08995 * 113.61660 * 254.52645 * 26 9 7 41 41 H 1.09000 * 113.61638 * 25.34865 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0811 -1.1959 0.0856 9 6 1.2553 -2.4967 -0.1114 10 8 0.3859 -2.7465 1.0244 11 6 0.9741 -2.8866 2.2228 12 8 2.1643 -2.7120 2.3357 13 6 0.1499 -3.2618 3.4274 14 1 -0.8830 -2.9522 3.2681 15 16 0.2086 -5.0594 3.6580 16 6 -0.4623 -5.2101 5.3440 17 6 0.5069 -4.5185 6.2913 18 6 0.8376 -3.1091 5.8898 19 6 1.3428 -2.3150 6.9256 20 6 1.7061 -1.0061 6.7161 21 6 1.5730 -0.4558 5.4544 22 6 1.0715 -1.2290 4.4330 23 6 0.6987 -2.5607 4.6455 24 6 2.1502 -3.6926 -0.4769 25 6 1.0061 -4.1664 -1.3917 26 6 0.5648 -2.6953 -1.4710 27 1 -0.4850 0.8368 -0.0733 28 1 -1.4384 -4.7281 5.3976 29 1 -0.5547 -6.2625 5.6121 30 1 0.0682 -4.5031 7.2890 31 1 1.4304 -5.0964 6.3284 32 1 1.4492 -2.7405 7.9126 33 1 2.0932 -0.4119 7.5306 34 1 1.8592 0.5697 5.2730 35 1 0.9667 -0.8002 3.4474 36 1 3.0541 -3.4124 -1.0178 37 1 2.3472 -4.3626 0.3600 38 1 0.2858 -4.8118 -0.8890 39 1 1.3455 -4.5725 -2.3446 40 1 -0.5163 -2.5613 -1.4355 41 1 1.0336 -2.1408 -2.2840 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842352230.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:50 Heat of formation + Delta-G solvation = -46.758766 kcal Electronic energy + Delta-G solvation = -25232.780381 eV Core-core repulsion = 21783.034163 eV Total energy + Delta-G solvation = -3449.746218 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.60182 -40.50762 -38.81276 -36.02133 -35.44972 -34.48208 -33.82270 -30.75407 -29.22260 -28.38969 -26.42437 -25.31463 -24.47164 -23.66831 -22.09308 -21.48727 -20.08243 -19.19562 -17.97131 -17.78392 -17.42854 -16.89388 -16.77123 -16.42474 -16.28311 -16.03100 -15.67798 -15.23858 -14.91995 -14.55492 -14.35546 -14.08304 -13.89229 -13.60455 -13.48484 -13.31836 -13.15266 -12.99740 -12.83481 -12.53986 -12.39729 -12.25820 -12.05874 -11.93626 -11.83546 -11.73475 -11.24758 -10.99431 -10.83421 -10.54745 -10.35325 -9.76351 -9.65276 -8.87477 -8.21120 -6.38263 0.05534 0.34909 0.36835 1.29337 1.31010 1.32497 1.40232 1.79210 2.06343 2.33087 2.74163 3.09057 3.24591 3.69364 3.76738 3.80101 3.91995 3.93711 4.06130 4.10466 4.16282 4.24580 4.30846 4.48662 4.50724 4.59339 4.70513 4.79295 4.81276 4.90661 4.95954 4.99193 5.03630 5.12293 5.29952 5.44849 5.46854 5.47674 5.54256 5.58561 5.68759 5.88530 6.00570 6.32010 6.64049 7.19941 7.35716 8.82404 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.013212 B = 0.006120 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.714809 B = 4574.236649 C = 6216.258330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.037 3.963 3 Si 0.940 3.060 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.284 1.284 7 C -0.535 4.535 8 H 0.044 0.956 9 C 0.210 3.790 10 O -0.344 6.344 11 C 0.482 3.518 12 O -0.516 6.516 13 C -0.013 4.013 14 H 0.115 0.885 15 S -0.244 6.244 16 C -0.071 4.071 17 C -0.078 4.078 18 C -0.071 4.071 19 C -0.119 4.119 20 C -0.107 4.107 21 C -0.136 4.136 22 C -0.118 4.118 23 C -0.087 4.087 24 C -0.151 4.151 25 C -0.124 4.124 26 C -0.094 4.094 27 H 0.264 0.736 28 H 0.101 0.899 29 H 0.151 0.849 30 H 0.130 0.870 31 H 0.096 0.904 32 H 0.167 0.833 33 H 0.160 0.840 34 H 0.126 0.874 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.040 0.960 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.050 0.950 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.579 -8.426 14.591 17.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.209 1.209 7 C -0.572 4.572 8 H 0.062 0.938 9 C 0.176 3.824 10 O -0.260 6.260 11 C 0.323 3.677 12 O -0.405 6.405 13 C -0.143 4.143 14 H 0.133 0.867 15 S -0.016 6.016 16 C -0.219 4.219 17 C -0.116 4.116 18 C -0.072 4.072 19 C -0.137 4.137 20 C -0.124 4.124 21 C -0.154 4.154 22 C -0.138 4.138 23 C -0.089 4.089 24 C -0.189 4.189 25 C -0.162 4.162 26 C -0.132 4.132 27 H 0.073 0.927 28 H 0.120 0.880 29 H 0.169 0.831 30 H 0.147 0.853 31 H 0.114 0.886 32 H 0.185 0.815 33 H 0.177 0.823 34 H 0.144 0.856 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.059 0.941 38 H 0.094 0.906 39 H 0.108 0.892 40 H 0.069 0.931 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.057 -9.092 13.890 16.728 hybrid contribution 0.191 2.521 -0.055 2.529 sum -1.866 -6.571 13.835 15.429 Atomic orbital electron populations 1.70129 1.06663 1.27775 1.47800 1.25647 0.95585 1.01773 0.93642 0.85905 0.78938 0.79819 0.78861 1.18720 1.19956 1.20944 1.21328 0.92672 0.91271 1.51948 0.93817 1.20922 0.87452 0.92297 0.81704 1.86390 1.43586 1.79690 1.16356 1.22339 0.86795 0.73886 0.84725 1.90560 1.17471 1.46353 1.86093 1.21647 1.02450 0.97758 0.92397 0.86736 1.87183 1.86325 1.02220 1.25865 1.23630 1.01503 1.07327 0.89399 1.20547 1.00653 0.89810 1.00610 1.19695 0.98714 0.97659 0.91107 1.21729 0.98601 0.93745 0.99619 1.21399 0.98428 0.96203 0.96401 1.21195 1.00036 1.00267 0.93886 1.21350 0.99327 0.94534 0.98607 1.18955 1.03191 0.93846 0.92904 1.23434 0.98416 0.97955 0.99076 1.22875 0.97257 0.96123 0.99902 1.22683 0.99571 0.95304 0.95645 0.92680 0.88036 0.83144 0.85252 0.88581 0.81521 0.82283 0.85633 0.90516 0.89833 0.94139 0.90558 0.89209 0.93098 0.90006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.46 12.79 21.45 0.27 -51.19 16 2 C 0.04 2.09 5.38 84.65 0.46 2.54 16 3 Si 0.94 45.19 29.54 68.60 2.03 47.22 16 4 H -0.26 -12.07 7.11 99.48 0.71 -11.37 16 5 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 7 C -0.53 -31.15 7.17 25.60 0.18 -30.97 16 8 H 0.04 2.66 7.82 -2.92 -0.02 2.63 16 9 C 0.21 11.14 0.33 -11.01 0.00 11.14 16 10 O -0.34 -18.54 9.82 -51.42 -0.51 -19.05 16 11 C 0.48 24.21 5.01 71.24 0.36 24.57 16 12 O -0.52 -28.69 13.85 21.97 0.30 -28.39 16 13 C -0.01 -0.54 3.10 29.16 0.09 -0.45 16 14 H 0.11 4.52 8.14 -2.39 -0.02 4.50 16 15 S -0.24 -7.81 21.67 -56.49 -1.22 -9.04 16 16 C -0.07 -1.31 6.57 71.70 0.47 -0.84 16 17 C -0.08 -1.35 5.29 29.42 0.16 -1.20 16 18 C -0.07 -1.90 5.73 -19.96 -0.11 -2.01 16 19 C -0.12 -2.59 9.39 22.50 0.21 -2.38 16 20 C -0.11 -2.59 10.05 22.09 0.22 -2.37 16 21 C -0.14 -4.50 10.07 22.12 0.22 -4.28 16 22 C -0.12 -4.88 8.30 22.52 0.19 -4.70 16 23 C -0.09 -3.20 5.20 -19.76 -0.10 -3.30 16 24 C -0.15 -7.01 6.96 31.18 0.22 -6.79 16 25 C -0.12 -4.90 8.03 31.18 0.25 -4.65 16 26 C -0.09 -4.43 7.09 31.12 0.22 -4.21 16 27 H 0.26 14.56 8.32 -92.71 -0.77 13.79 16 28 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.15 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.13 1.19 7.97 -2.39 -0.02 1.17 16 31 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.17 2.08 7.94 -2.91 -0.02 2.05 16 33 H 0.16 2.63 8.06 -2.91 -0.02 2.60 16 34 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 35 H 0.08 3.90 6.89 -2.91 -0.02 3.88 16 36 H 0.08 3.76 8.09 -2.39 -0.02 3.74 16 37 H 0.04 1.93 7.54 -2.38 -0.02 1.91 16 38 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 39 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 40 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 41 H 0.08 3.79 8.09 -2.39 -0.02 3.77 16 Total: -1.00 -74.61 348.43 4.92 -69.69 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 1.03 Total: 20.63 kcal Atomic # 6 Polarization: -32.90 SS G_CDS: 3.02 Total: -29.88 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.27 Total: -51.19 kcal Atomic # 8 Polarization: -47.24 SS G_CDS: -0.20 Total: -47.44 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 16 Polarization: -7.81 SS G_CDS: -1.22 Total: -9.04 kcal Total: -74.61 4.92 -69.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842352230.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.928 kcal (2) G-P(sol) polarization free energy of solvation -74.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds