Wall clock time and date at job start Tue Mar 31 2020 11:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00103 * 2 1 4 4 H 1.48499 * 109.46912 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47132 * 119.99852 * 3 2 1 6 6 H 1.48501 * 109.46707 * 239.99825 * 3 2 1 7 7 C 1.37878 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99918 * 181.80443 * 7 2 1 9 9 C 1.50702 * 120.00174 * 1.80501 * 7 2 1 10 10 O 1.45206 * 112.84888 * 298.56142 * 9 7 2 11 11 C 1.34234 * 116.99611 * 294.92264 * 10 9 7 12 12 O 1.20823 * 120.00292 * 2.81918 * 11 10 9 13 13 C 1.50700 * 119.99908 * 182.81461 * 11 10 9 14 14 H 1.09005 * 109.30798 * 29.99748 * 13 11 10 15 15 S 1.81332 * 109.31340 * 270.38705 * 13 11 10 16 16 C 1.82081 * 100.82596 * 193.81099 * 15 13 11 17 17 C 1.52143 * 107.71352 * 64.14642 * 16 15 13 18 18 C 1.50234 * 113.59382 * 307.20668 * 17 16 15 19 19 C 1.39945 * 114.45792 * 200.18852 * 18 17 16 20 20 C 1.37450 * 121.52958 * 180.68217 * 19 18 17 21 21 C 1.38295 * 119.51402 * 0.07126 * 20 19 18 22 22 C 1.37567 * 119.25351 * 359.64720 * 21 20 19 23 23 C 1.36693 * 126.67186 * 20.55740 * 18 17 16 24 24 C 1.53774 * 113.61681 * 167.36467 * 9 7 2 25 25 C 1.53957 * 87.02293 * 220.04677 * 24 9 7 26 26 C 1.53778 * 113.61493 * 69.75469 * 9 7 2 27 27 H 0.97005 * 120.00128 * 175.05782 * 1 2 3 28 28 H 1.09001 * 109.80962 * 183.69879 * 16 15 13 29 29 H 1.09004 * 109.80756 * 304.53434 * 16 15 13 30 30 H 1.08994 * 108.66016 * 68.27197 * 17 16 15 31 31 H 1.08999 * 108.65827 * 186.28604 * 17 16 15 32 32 H 1.08005 * 119.23485 * 0.70248 * 19 18 17 33 33 H 1.08003 * 120.24454 * 180.02562 * 20 19 18 34 34 H 1.07997 * 120.37332 * 179.62733 * 21 20 19 35 35 H 1.08001 * 119.32896 * 180.02562 * 22 21 20 36 36 H 1.09000 * 113.61316 * 334.56792 * 24 9 7 37 37 H 1.09001 * 113.61611 * 105.46755 * 24 9 7 38 38 H 1.09003 * 113.53504 * 270.81553 * 25 24 9 39 39 H 1.08995 * 113.74487 * 139.94010 * 25 24 9 40 40 H 1.09003 * 113.61592 * 254.53254 * 26 9 7 41 41 H 1.08998 * 113.61734 * 25.35262 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6962 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0841 -1.1943 0.0300 9 6 1.2516 -2.4989 -0.0400 10 8 0.3839 -2.6851 1.1093 11 6 0.9768 -2.8013 2.3080 12 8 2.1771 -2.6983 2.4008 13 6 0.1455 -3.0602 3.5380 14 1 -0.7424 -3.6281 3.2599 15 16 -0.3584 -1.4774 4.2653 16 6 -0.9461 -2.0238 5.8998 17 6 0.2445 -2.6013 6.6505 18 6 0.9835 -3.6602 5.8826 19 6 1.7728 -4.5040 6.6722 20 6 2.5215 -5.5146 6.1177 21 6 2.4997 -5.7060 4.7482 22 6 1.7214 -4.8837 3.9668 23 6 0.9566 -3.8564 4.5301 24 6 2.1425 -3.7151 -0.3426 25 6 0.9952 -4.2341 -1.2284 26 6 0.5577 -2.7682 -1.3857 27 1 -0.4850 -0.8370 -0.0724 28 1 -1.3526 -1.1746 6.4490 29 1 -1.7142 -2.7879 5.7797 30 1 0.9365 -1.7918 6.8824 31 1 -0.1098 -3.0348 7.5857 32 1 1.7938 -4.3580 7.7421 33 1 3.1230 -6.1540 6.7468 34 1 3.0873 -6.4919 4.2973 35 1 1.7031 -5.0324 2.8973 36 1 3.0460 -3.4667 -0.8995 37 1 2.3395 -4.3398 0.5287 38 1 0.2742 -4.8496 -0.6904 39 1 1.3315 -4.6915 -2.1588 40 1 -0.5230 -2.6294 -1.3552 41 1 1.0262 -2.2593 -2.2281 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842352231.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:53 Heat of formation + Delta-G solvation = -34.967688 kcal Electronic energy + Delta-G solvation = -25236.632891 eV Core-core repulsion = 21787.397973 eV Total energy + Delta-G solvation = -3449.234918 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.16594 -39.22383 -37.21267 -34.48444 -34.32220 -32.61348 -32.34852 -29.74716 -27.90826 -25.97292 -24.80225 -24.12693 -22.89475 -22.38958 -20.80931 -20.23475 -18.46180 -17.50161 -16.69903 -16.51394 -16.13646 -15.40146 -15.32504 -15.13367 -14.80758 -14.18029 -14.08108 -13.70099 -13.41907 -13.30310 -13.04430 -13.01212 -12.60425 -12.41495 -12.23050 -11.85808 -11.57243 -11.41503 -11.21805 -10.88838 -10.77350 -10.52782 -10.42354 -10.21528 -10.11751 -10.00905 -9.76788 -9.47363 -9.06117 -8.67832 -8.61880 -8.43275 -8.16068 -7.46546 -6.35416 -4.14301 1.26600 1.39884 1.60949 2.50251 3.41359 3.46015 3.49767 3.54319 3.67083 3.86018 4.45199 4.53916 4.61323 4.75212 4.98380 5.06531 5.08437 5.28008 5.31451 5.34381 5.40788 5.45895 5.52654 5.60055 5.65364 5.66103 5.78479 5.88457 5.97576 6.07377 6.24795 6.27311 6.45686 6.49191 6.56952 6.62338 6.66472 6.83125 6.98846 7.05119 7.29961 7.64250 8.11930 8.42042 8.83001 8.95040 9.61277 11.02198 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.014028 B = 0.005568 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.594727 B = 5027.359586 C = 6018.051638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.034 3.966 3 Si 1.062 2.938 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.595 4.595 8 H 0.058 0.942 9 C 0.213 3.787 10 O -0.348 6.348 11 C 0.487 3.513 12 O -0.475 6.475 13 C -0.027 4.027 14 H 0.119 0.881 15 S -0.173 6.173 16 C -0.100 4.100 17 C -0.079 4.079 18 C -0.066 4.066 19 C -0.127 4.127 20 C -0.114 4.114 21 C -0.122 4.122 22 C -0.087 4.087 23 C -0.061 4.061 24 C -0.144 4.144 25 C -0.149 4.149 26 C -0.110 4.110 27 H 0.279 0.721 28 H 0.114 0.886 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.118 0.882 36 H 0.082 0.918 37 H 0.051 0.949 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.331 -9.959 11.531 15.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.175 4.175 3 Si 0.890 3.110 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.632 4.632 8 H 0.076 0.924 9 C 0.179 3.821 10 O -0.265 6.265 11 C 0.326 3.674 12 O -0.361 6.361 13 C -0.157 4.157 14 H 0.137 0.863 15 S 0.056 5.944 16 C -0.249 4.249 17 C -0.118 4.118 18 C -0.067 4.067 19 C -0.145 4.145 20 C -0.133 4.133 21 C -0.140 4.140 22 C -0.106 4.106 23 C -0.063 4.063 24 C -0.182 4.182 25 C -0.187 4.187 26 C -0.147 4.147 27 H 0.091 0.909 28 H 0.132 0.868 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.136 0.864 36 H 0.101 0.899 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.158 -7.200 11.113 13.292 hybrid contribution 0.313 -2.848 0.403 2.894 sum -0.844 -10.049 11.515 15.306 Atomic orbital electron populations 1.70695 1.06698 1.32035 1.42414 1.25808 0.96502 1.02474 0.92668 0.83656 0.75155 0.75493 0.76745 1.20607 1.21258 1.21265 1.21988 0.94345 0.90319 1.56581 0.92369 1.20923 0.86822 0.94033 0.80293 1.86407 1.43983 1.80838 1.15243 1.21533 0.86848 0.74953 0.84096 1.90617 1.15285 1.43722 1.86469 1.21853 1.01171 0.98263 0.94410 0.86280 1.87941 1.81901 1.09562 1.15007 1.23416 1.00021 1.04676 0.96764 1.20431 0.96229 0.97329 0.97800 1.19259 0.98512 0.96952 0.91928 1.21226 0.97861 0.95983 0.99414 1.20972 0.99053 0.98058 0.95172 1.20981 0.99338 0.99803 0.93922 1.21374 0.95388 0.93850 0.99990 1.18927 0.98951 0.96358 0.92060 1.23364 0.97668 0.98458 0.98692 1.23000 0.98959 0.97363 0.99361 1.22967 1.00143 0.93963 0.97664 0.90896 0.86773 0.89449 0.89257 0.89930 0.86142 0.85984 0.85831 0.86355 0.89894 0.93058 0.91283 0.92522 0.92252 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.27 13.51 55.43 0.75 -25.52 16 2 C 0.03 0.98 5.40 -17.82 -0.10 0.89 16 3 Si 1.06 25.94 29.90 -169.99 -5.08 20.85 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.60 -16.89 7.35 -34.44 -0.25 -17.15 16 8 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.21 5.34 0.11 -90.96 -0.01 5.33 16 10 O -0.35 -8.69 9.09 -39.27 -0.36 -9.05 16 11 C 0.49 11.40 5.20 36.01 0.19 11.59 16 12 O -0.47 -12.26 13.38 -18.75 -0.25 -12.51 16 13 C -0.03 -0.52 3.11 -28.95 -0.09 -0.61 16 14 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 15 S -0.17 -3.22 21.67 -107.50 -2.33 -5.55 16 16 C -0.10 -1.23 6.57 36.72 0.24 -0.99 16 17 C -0.08 -0.92 5.29 -28.55 -0.15 -1.07 16 18 C -0.07 -0.94 5.73 -104.77 -0.60 -1.54 16 19 C -0.13 -1.54 9.39 -39.23 -0.37 -1.91 16 20 C -0.11 -1.37 10.05 -39.85 -0.40 -1.77 16 21 C -0.12 -1.67 10.07 -39.81 -0.40 -2.07 16 22 C -0.09 -1.43 8.18 -39.20 -0.32 -1.75 16 23 C -0.06 -1.04 5.20 -104.47 -0.54 -1.58 16 24 C -0.14 -3.15 6.90 -25.83 -0.18 -3.33 16 25 C -0.15 -2.85 8.03 -25.82 -0.21 -3.05 16 26 C -0.11 -2.45 6.67 -25.92 -0.17 -2.62 16 27 H 0.28 8.26 5.76 -40.82 -0.24 8.03 16 28 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.08 0.70 7.97 -51.93 -0.41 0.29 16 32 H 0.12 1.12 7.94 -52.48 -0.42 0.70 16 33 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 34 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 35 H 0.12 2.08 6.81 -52.49 -0.36 1.72 16 36 H 0.08 1.80 8.09 -51.93 -0.42 1.38 16 37 H 0.05 1.11 7.32 -51.93 -0.38 0.73 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.06 1.33 7.77 -51.93 -0.40 0.92 16 41 H 0.09 2.00 8.09 -51.93 -0.42 1.58 16 LS Contribution 344.65 15.07 5.19 5.19 Total: -1.00 -33.15 344.65 -11.08 -44.22 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -5.64 Total: 3.99 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -3.36 Total: -21.64 kcal Atomic # 7 Polarization: -26.27 SS G_CDS: 0.75 Total: -25.52 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.61 Total: -21.56 kcal Atomic # 14 Polarization: 25.94 SS G_CDS: -5.08 Total: 20.85 kcal Atomic # 16 Polarization: -3.22 SS G_CDS: -2.33 Total: -5.55 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.15 -11.08 -44.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842352231.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.255 kcal (2) G-P(sol) polarization free energy of solvation -33.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds