Wall clock time and date at job start Tue Mar 31 2020 11:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00103 * 2 1 4 4 H 1.48499 * 109.46912 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47132 * 119.99852 * 3 2 1 6 6 H 1.48501 * 109.46707 * 239.99825 * 3 2 1 7 7 C 1.37878 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99918 * 181.80443 * 7 2 1 9 9 C 1.50702 * 120.00174 * 1.80501 * 7 2 1 10 10 O 1.45206 * 112.84888 * 298.56142 * 9 7 2 11 11 C 1.34234 * 116.99611 * 294.92264 * 10 9 7 12 12 O 1.20823 * 120.00292 * 2.81918 * 11 10 9 13 13 C 1.50700 * 119.99908 * 182.81461 * 11 10 9 14 14 H 1.09005 * 109.30798 * 29.99748 * 13 11 10 15 15 S 1.81332 * 109.31340 * 270.38705 * 13 11 10 16 16 C 1.82081 * 100.82596 * 193.81099 * 15 13 11 17 17 C 1.52143 * 107.71352 * 64.14642 * 16 15 13 18 18 C 1.50234 * 113.59382 * 307.20668 * 17 16 15 19 19 C 1.39945 * 114.45792 * 200.18852 * 18 17 16 20 20 C 1.37450 * 121.52958 * 180.68217 * 19 18 17 21 21 C 1.38295 * 119.51402 * 0.07126 * 20 19 18 22 22 C 1.37567 * 119.25351 * 359.64720 * 21 20 19 23 23 C 1.36693 * 126.67186 * 20.55740 * 18 17 16 24 24 C 1.53774 * 113.61681 * 167.36467 * 9 7 2 25 25 C 1.53957 * 87.02293 * 220.04677 * 24 9 7 26 26 C 1.53778 * 113.61493 * 69.75469 * 9 7 2 27 27 H 0.97005 * 120.00128 * 175.05782 * 1 2 3 28 28 H 1.09001 * 109.80962 * 183.69879 * 16 15 13 29 29 H 1.09004 * 109.80756 * 304.53434 * 16 15 13 30 30 H 1.08994 * 108.66016 * 68.27197 * 17 16 15 31 31 H 1.08999 * 108.65827 * 186.28604 * 17 16 15 32 32 H 1.08005 * 119.23485 * 0.70248 * 19 18 17 33 33 H 1.08003 * 120.24454 * 180.02562 * 20 19 18 34 34 H 1.07997 * 120.37332 * 179.62733 * 21 20 19 35 35 H 1.08001 * 119.32896 * 180.02562 * 22 21 20 36 36 H 1.09000 * 113.61316 * 334.56792 * 24 9 7 37 37 H 1.09001 * 113.61611 * 105.46755 * 24 9 7 38 38 H 1.09003 * 113.53504 * 270.81553 * 25 24 9 39 39 H 1.08995 * 113.74487 * 139.94010 * 25 24 9 40 40 H 1.09003 * 113.61592 * 254.53254 * 26 9 7 41 41 H 1.08998 * 113.61734 * 25.35262 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6962 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0841 -1.1943 0.0300 9 6 1.2516 -2.4989 -0.0400 10 8 0.3839 -2.6851 1.1093 11 6 0.9768 -2.8013 2.3080 12 8 2.1771 -2.6983 2.4008 13 6 0.1455 -3.0602 3.5380 14 1 -0.7424 -3.6281 3.2599 15 16 -0.3584 -1.4774 4.2653 16 6 -0.9461 -2.0238 5.8998 17 6 0.2445 -2.6013 6.6505 18 6 0.9835 -3.6602 5.8826 19 6 1.7728 -4.5040 6.6722 20 6 2.5215 -5.5146 6.1177 21 6 2.4997 -5.7060 4.7482 22 6 1.7214 -4.8837 3.9668 23 6 0.9566 -3.8564 4.5301 24 6 2.1425 -3.7151 -0.3426 25 6 0.9952 -4.2341 -1.2284 26 6 0.5577 -2.7682 -1.3857 27 1 -0.4850 -0.8370 -0.0724 28 1 -1.3526 -1.1746 6.4490 29 1 -1.7142 -2.7879 5.7797 30 1 0.9365 -1.7918 6.8824 31 1 -0.1098 -3.0348 7.5857 32 1 1.7938 -4.3580 7.7421 33 1 3.1230 -6.1540 6.7468 34 1 3.0873 -6.4919 4.2973 35 1 1.7031 -5.0324 2.8973 36 1 3.0460 -3.4667 -0.8995 37 1 2.3395 -4.3398 0.5287 38 1 0.2742 -4.8496 -0.6904 39 1 1.3315 -4.6915 -2.1588 40 1 -0.5230 -2.6294 -1.3552 41 1 1.0262 -2.2593 -2.2281 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842352231.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:52 Heat of formation + Delta-G solvation = -52.068859 kcal Electronic energy + Delta-G solvation = -25237.374453 eV Core-core repulsion = 21787.397973 eV Total energy + Delta-G solvation = -3449.976481 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.78628 -40.58390 -38.97273 -36.21036 -35.46768 -34.53967 -33.86576 -30.77898 -29.20077 -27.97705 -26.60456 -25.35998 -24.50752 -23.72604 -22.21369 -21.51757 -20.33664 -19.48790 -18.18169 -17.85731 -17.69347 -16.94914 -16.74138 -16.40416 -16.10631 -15.74222 -15.68739 -15.44282 -15.00664 -14.60625 -14.43103 -14.31282 -14.13604 -13.83817 -13.58813 -13.27859 -13.10704 -12.78257 -12.59784 -12.39768 -12.34325 -12.22880 -12.06960 -11.96638 -11.94260 -11.85791 -11.33949 -11.00680 -10.90434 -10.58212 -10.18594 -9.77684 -9.65900 -8.91865 -8.60990 -6.39917 0.02526 0.33012 0.36180 1.30088 1.44620 1.51280 1.71868 1.73745 1.87822 2.50395 2.73086 3.16318 3.20409 3.62144 3.68728 3.72938 3.76874 3.85123 3.92520 4.02786 4.11909 4.16930 4.19471 4.43109 4.47274 4.50469 4.66142 4.68688 4.74651 4.84177 4.85904 4.92059 4.96026 5.02822 5.09209 5.31765 5.42460 5.46791 5.48834 5.51508 5.68431 5.98917 6.06756 6.17386 6.59002 7.05127 7.41706 8.76305 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.014028 B = 0.005568 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.594727 B = 5027.359586 C = 6018.051638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.008 4.008 3 Si 1.098 2.902 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.262 1.262 7 C -0.609 4.609 8 H 0.035 0.965 9 C 0.188 3.812 10 O -0.359 6.359 11 C 0.483 3.517 12 O -0.509 6.509 13 C -0.009 4.009 14 H 0.125 0.875 15 S -0.265 6.265 16 C -0.072 4.072 17 C -0.080 4.080 18 C -0.074 4.074 19 C -0.121 4.121 20 C -0.108 4.108 21 C -0.128 4.128 22 C -0.115 4.115 23 C -0.091 4.091 24 C -0.142 4.142 25 C -0.120 4.120 26 C -0.110 4.110 27 H 0.270 0.730 28 H 0.142 0.858 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.130 0.870 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.141 0.859 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.046 0.954 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.052 0.948 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.289 -11.379 14.301 18.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.211 4.211 3 Si 0.921 3.079 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.187 1.187 7 C -0.646 4.646 8 H 0.053 0.947 9 C 0.154 3.846 10 O -0.276 6.276 11 C 0.324 3.676 12 O -0.397 6.397 13 C -0.138 4.138 14 H 0.143 0.857 15 S -0.037 6.037 16 C -0.219 4.219 17 C -0.117 4.117 18 C -0.075 4.075 19 C -0.139 4.139 20 C -0.125 4.125 21 C -0.146 4.146 22 C -0.135 4.135 23 C -0.092 4.092 24 C -0.180 4.180 25 C -0.158 4.158 26 C -0.148 4.148 27 H 0.081 0.919 28 H 0.160 0.840 29 H 0.123 0.877 30 H 0.107 0.893 31 H 0.148 0.852 32 H 0.179 0.821 33 H 0.178 0.822 34 H 0.159 0.841 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.064 0.936 38 H 0.099 0.901 39 H 0.110 0.890 40 H 0.071 0.929 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.126 -8.641 13.874 16.384 hybrid contribution 0.338 -2.481 -0.316 2.524 sum -0.788 -11.122 13.558 17.554 Atomic orbital electron populations 1.70789 1.07217 1.31434 1.44599 1.26945 0.96701 1.05449 0.92051 0.83194 0.74576 0.72622 0.77506 1.20098 1.21596 1.18704 1.22168 0.93472 0.92374 1.56578 0.94664 1.21148 0.88203 0.93931 0.81273 1.86371 1.44002 1.81063 1.16144 1.22373 0.87084 0.73480 0.84707 1.90569 1.16869 1.45375 1.86911 1.21682 1.00949 0.98269 0.92908 0.85738 1.88100 1.82709 1.11601 1.21276 1.23608 1.00709 1.06067 0.91547 1.20537 0.95599 0.96784 0.98826 1.19657 0.98948 0.97898 0.90982 1.21694 0.96254 0.94754 1.01178 1.21443 0.98491 0.98076 0.94529 1.21263 0.98701 0.99618 0.94997 1.21315 0.97484 0.95561 0.99119 1.18950 1.00311 0.96873 0.93071 1.23307 0.98205 0.97303 0.99170 1.22861 0.97206 0.95471 1.00218 1.22924 0.99410 0.96479 0.95953 0.91939 0.83993 0.87708 0.89322 0.85236 0.82135 0.82229 0.84143 0.89143 0.90127 0.93565 0.90054 0.88963 0.92907 0.89714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.76 13.51 21.45 0.29 -55.47 16 2 C -0.01 -0.46 5.40 84.65 0.46 -0.01 16 3 Si 1.10 53.66 29.90 68.60 2.05 55.71 16 4 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.61 -36.10 7.35 25.60 0.19 -35.91 16 8 H 0.04 2.18 7.81 -2.91 -0.02 2.16 16 9 C 0.19 9.84 0.11 -11.02 0.00 9.83 16 10 O -0.36 -18.88 9.09 -51.46 -0.47 -19.35 16 11 C 0.48 23.86 5.20 71.24 0.37 24.23 16 12 O -0.51 -27.86 13.38 21.97 0.29 -27.57 16 13 C -0.01 -0.35 3.11 29.15 0.09 -0.26 16 14 H 0.12 4.50 8.14 -2.39 -0.02 4.48 16 15 S -0.26 -10.08 21.67 -56.49 -1.22 -11.31 16 16 C -0.07 -1.57 6.57 71.70 0.47 -1.10 16 17 C -0.08 -1.53 5.29 29.42 0.16 -1.38 16 18 C -0.07 -1.93 5.73 -19.96 -0.11 -2.05 16 19 C -0.12 -2.43 9.39 22.50 0.21 -2.22 16 20 C -0.11 -2.18 10.05 22.10 0.22 -1.96 16 21 C -0.13 -3.33 10.07 22.12 0.22 -3.10 16 22 C -0.12 -3.89 8.18 22.52 0.18 -3.71 16 23 C -0.09 -3.06 5.20 -19.77 -0.10 -3.17 16 24 C -0.14 -6.38 6.90 31.18 0.22 -6.17 16 25 C -0.12 -4.50 8.03 31.18 0.25 -4.25 16 26 C -0.11 -5.01 6.67 31.12 0.21 -4.81 16 27 H 0.27 16.70 5.76 -92.70 -0.53 16.17 16 28 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 30 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.13 1.39 7.97 -2.39 -0.02 1.37 16 32 H 0.16 1.94 7.94 -2.91 -0.02 1.92 16 33 H 0.16 2.04 8.06 -2.91 -0.02 2.01 16 34 H 0.14 3.02 8.06 -2.91 -0.02 2.99 16 35 H 0.09 3.43 6.81 -2.91 -0.02 3.41 16 36 H 0.08 3.59 8.09 -2.39 -0.02 3.57 16 37 H 0.05 2.08 7.32 -2.39 -0.02 2.06 16 38 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 39 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 40 H 0.05 2.43 7.77 -2.39 -0.02 2.42 16 41 H 0.08 3.88 8.09 -2.39 -0.02 3.86 16 Total: -1.00 -78.02 344.65 5.23 -72.79 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 1.26 Total: 21.22 kcal Atomic # 6 Polarization: -39.06 SS G_CDS: 3.03 Total: -36.03 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: 0.29 Total: -55.47 kcal Atomic # 8 Polarization: -46.74 SS G_CDS: -0.17 Total: -46.91 kcal Atomic # 14 Polarization: 53.66 SS G_CDS: 2.05 Total: 55.71 kcal Atomic # 16 Polarization: -10.08 SS G_CDS: -1.22 Total: -11.31 kcal Total: -78.02 5.23 -72.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842352231.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.717 kcal (2) G-P(sol) polarization free energy of solvation -78.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds