Wall clock time and date at job start Tue Mar 31 2020 11:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.33874 * 122.75987 * 2 1 4 4 O 1.21234 * 125.39533 * 359.97438 * 3 2 1 5 5 C 1.51313 * 109.20894 * 179.84534 * 3 2 1 6 6 C 1.54234 * 103.54951 * 0.38422 * 5 3 2 7 7 H 1.09005 * 110.60578 * 241.25777 * 6 5 3 8 8 N 1.46504 * 110.73532 * 118.36270 * 6 5 3 9 9 C 1.34778 * 119.99852 * 159.33488 * 8 6 5 10 10 O 1.21584 * 120.00255 * 359.97438 * 9 8 6 11 11 C 1.47536 * 119.99317 * 179.97438 * 9 8 6 12 12 C 1.39658 * 120.20592 * 359.97438 * 11 9 8 13 13 C 1.37823 * 119.92485 * 179.97438 * 12 11 9 14 14 C 1.38574 * 120.32022 * 0.02562 * 13 12 11 15 15 C 1.38024 * 120.40152 * 359.97438 * 14 13 12 16 16 C 1.38831 * 120.07316 * 359.73983 * 15 14 13 17 17 O 1.35524 * 120.16235 * 180.27843 * 16 15 14 18 18 C 1.34811 * 116.99556 * 354.39735 * 17 16 15 19 19 H 1.08003 * 120.00517 * 5.07049 * 18 17 16 20 20 C 1.38702 * 119.99617 * 185.06564 * 18 17 16 21 21 N 1.31518 * 120.00256 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99902 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46884 * 90.00065 * 22 20 18 24 24 H 1.48500 * 109.46997 * 209.99810 * 22 20 18 25 25 H 1.48502 * 109.46980 * 329.99933 * 22 20 18 26 26 C 1.33870 * 122.76382 * 180.29180 * 2 1 3 27 27 O 1.21223 * 125.39469 * 0.02562 * 26 2 1 28 28 H 1.09001 * 109.46630 * 269.70637 * 1 2 3 29 29 H 1.08994 * 109.47161 * 149.71312 * 1 2 3 30 30 H 1.08996 * 109.47169 * 29.70202 * 1 2 3 31 31 H 1.08998 * 110.79727 * 241.78153 * 5 3 2 32 32 H 1.08995 * 110.55034 * 118.87342 * 5 3 2 33 33 H 0.97006 * 119.99697 * 339.33004 * 8 6 5 34 34 H 1.08001 * 120.03485 * 359.95528 * 12 11 9 35 35 H 1.07998 * 119.83986 * 180.02562 * 13 12 11 36 36 H 1.07999 * 119.79307 * 179.97438 * 14 13 12 37 37 H 1.08005 * 119.95881 * 180.02562 * 15 14 13 38 38 H 0.97000 * 120.00457 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1895 1.1258 0.0000 4 8 1.7384 2.2511 -0.0004 5 6 3.6605 0.7713 0.0039 6 6 3.6605 -0.7711 -0.0039 7 1 4.1477 -1.1592 0.8906 8 7 4.3160 -1.2837 -1.2097 9 6 4.7942 -2.5435 -1.2329 10 8 4.6821 -3.2545 -0.2530 11 6 5.4538 -3.0598 -2.4474 12 6 5.5845 -2.2470 -3.5755 13 6 6.2021 -2.7350 -4.7068 14 6 6.6947 -4.0301 -4.7315 15 6 6.5728 -4.8449 -3.6241 16 6 5.9588 -4.3683 -2.4738 17 8 5.8432 -5.1649 -1.3836 18 6 6.2397 -6.4465 -1.5173 19 1 6.7036 -6.7753 -2.4355 20 6 6.0518 -7.3428 -0.4756 21 7 5.4864 -6.9426 0.6424 22 14 6.6018 -9.1184 -0.6606 23 1 8.0050 -9.2531 -0.1938 24 1 5.7230 -9.9961 0.1534 25 1 6.5144 -9.5175 -2.0883 26 6 2.1895 -1.1257 -0.0057 27 8 1.7385 -2.2509 -0.0119 28 1 -0.3632 -0.0053 1.0277 29 1 -0.3633 -0.8873 -0.5182 30 1 -0.3633 0.8926 -0.5092 31 1 4.1476 1.1503 0.9023 32 1 4.1499 1.1594 -0.8893 33 1 4.4057 -0.7163 -1.9914 34 1 5.2016 -1.2372 -3.5615 35 1 6.3028 -2.1051 -5.5783 36 1 7.1768 -4.4039 -5.6226 37 1 6.9596 -5.8530 -3.6511 38 1 5.3547 -7.5694 1.3708 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848047105.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:35 Heat of formation + Delta-G solvation = -78.890863 kcal Electronic energy + Delta-G solvation = -26316.329132 eV Core-core repulsion = 22318.896348 eV Total energy + Delta-G solvation = -3997.432785 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.05743 -39.63811 -38.72484 -38.00115 -36.38893 -35.99240 -34.77831 -32.37564 -31.95577 -30.20612 -28.96827 -27.18574 -26.00617 -25.34978 -23.31932 -22.28356 -21.41606 -20.39841 -19.60765 -18.15924 -17.90574 -17.23693 -17.19597 -16.60882 -16.17061 -15.42660 -15.08084 -14.68880 -14.44081 -14.38125 -14.33380 -14.15689 -13.92182 -13.81434 -13.23628 -13.11864 -12.83568 -12.79066 -12.75159 -12.54629 -12.05716 -11.73808 -11.37852 -11.17239 -10.94255 -10.90681 -10.81270 -10.47600 -10.32218 -9.91747 -9.62955 -8.99819 -8.90138 -8.84735 -8.33635 -7.35585 -6.46515 -4.06628 1.34984 1.64272 2.27624 2.34118 2.48746 3.10675 3.12253 3.16965 3.39899 3.58735 3.91533 3.92856 4.09005 4.14895 4.60107 4.77303 4.98241 5.02487 5.11483 5.13833 5.24622 5.27667 5.31767 5.44477 5.45884 5.54439 5.69991 5.99713 6.06682 6.47916 6.52421 6.64031 6.65855 6.85599 7.01164 7.14157 7.18929 7.25447 7.64617 7.67061 7.80041 7.93498 8.90056 8.94434 9.63487 10.66868 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.015218 B = 0.003862 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.489337 B = 7247.632336 C = 8593.390139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.578 5.578 3 C 0.532 3.468 4 O -0.488 6.488 5 C -0.163 4.163 6 C 0.124 3.876 7 H 0.139 0.861 8 N -0.729 5.729 9 C 0.556 3.444 10 O -0.480 6.480 11 C -0.228 4.228 12 C -0.038 4.038 13 C -0.231 4.231 14 C -0.049 4.049 15 C -0.236 4.236 16 C 0.190 3.810 17 O -0.122 6.122 18 C -0.404 4.404 19 H 0.095 0.905 20 C 0.046 3.954 21 N -0.829 5.829 22 Si 0.941 3.059 23 H -0.272 1.272 24 H -0.276 1.276 25 H -0.266 1.266 26 C 0.506 3.494 27 O -0.442 6.442 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.132 0.868 32 H 0.127 0.873 33 H 0.398 0.602 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.132 0.868 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.938 14.082 -4.465 15.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.323 5.323 3 C 0.321 3.679 4 O -0.361 6.361 5 C -0.203 4.203 6 C 0.014 3.986 7 H 0.156 0.844 8 N -0.388 5.388 9 C 0.346 3.654 10 O -0.351 6.351 11 C -0.233 4.233 12 C -0.057 4.057 13 C -0.250 4.250 14 C -0.068 4.068 15 C -0.255 4.255 16 C 0.129 3.871 17 O -0.019 6.019 18 C -0.480 4.480 19 H 0.112 0.888 20 C -0.163 4.163 21 N -0.460 5.460 22 Si 0.765 3.235 23 H -0.197 1.197 24 H -0.201 1.201 25 H -0.190 1.190 26 C 0.291 3.709 27 O -0.308 6.308 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.150 0.850 32 H 0.145 0.855 33 H 0.235 0.765 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.150 0.850 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.706 13.355 -3.202 14.225 hybrid contribution 0.164 -0.582 -0.614 0.862 sum -3.541 12.773 -3.816 13.793 Atomic orbital electron populations 1.21919 0.77308 1.04551 1.03648 1.46775 1.09671 1.09470 1.66424 1.20686 0.89899 0.83709 0.73655 1.90770 1.77820 1.21235 1.46248 1.22809 0.94270 0.95024 1.08160 1.21408 0.90100 0.92901 0.94181 0.84350 1.45817 1.62136 1.15947 1.14872 1.18325 0.78244 0.80271 0.88549 1.90991 1.54208 1.55114 1.34788 1.18685 1.14111 0.94951 0.95542 1.20728 0.95809 0.97058 0.92055 1.20453 1.08870 0.97016 0.98651 1.20908 0.95666 0.93443 0.96787 1.21164 1.08277 1.01958 0.94130 1.19243 0.90932 0.89874 0.87004 1.84163 1.68532 1.20599 1.28635 1.21506 1.40741 0.82734 1.03022 0.88800 1.25397 0.96222 1.00042 0.94623 1.70124 1.36471 1.35710 1.03697 0.85725 0.78695 0.80162 0.78916 1.19715 1.20099 1.19034 1.21627 0.90515 0.83934 0.74863 1.90857 1.77162 1.20973 1.41808 0.90967 0.89476 0.89596 0.84956 0.85539 0.76518 0.87131 0.87223 0.87134 0.85012 0.91776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.65 10.59 59.85 0.63 1.28 16 2 N -0.58 -6.72 2.95 -122.73 -0.36 -7.09 16 3 C 0.53 5.58 8.08 -11.09 -0.09 5.49 16 4 O -0.49 -6.25 17.47 5.60 0.10 -6.15 16 5 C -0.16 -1.27 6.79 -26.94 -0.18 -1.46 16 6 C 0.12 1.55 3.37 -68.14 -0.23 1.32 16 7 H 0.14 1.87 7.68 -51.93 -0.40 1.47 16 8 N -0.73 -10.41 5.11 -55.05 -0.28 -10.69 16 9 C 0.56 11.54 7.75 -12.47 -0.10 11.44 16 10 O -0.48 -12.64 14.88 -16.56 -0.25 -12.88 16 11 C -0.23 -4.74 5.89 -104.81 -0.62 -5.36 16 12 C -0.04 -0.60 9.53 -39.20 -0.37 -0.98 16 13 C -0.23 -3.59 10.02 -39.61 -0.40 -3.99 16 14 C -0.05 -0.84 10.03 -39.54 -0.40 -1.24 16 15 C -0.24 -4.94 9.16 -39.44 -0.36 -5.30 16 16 C 0.19 4.59 6.66 -38.60 -0.26 4.33 16 17 O -0.12 -3.53 7.84 -21.06 -0.17 -3.69 16 18 C -0.40 -11.31 9.49 30.90 0.29 -11.02 16 19 H 0.09 2.37 5.21 -52.48 -0.27 2.10 16 20 C 0.05 1.26 5.49 -17.51 -0.10 1.16 16 21 N -0.83 -24.88 13.67 55.48 0.76 -24.13 16 22 Si 0.94 20.37 29.55 -169.99 -5.02 15.35 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 24 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 25 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 26 C 0.51 7.46 7.71 -11.09 -0.09 7.37 16 27 O -0.44 -8.77 17.48 5.61 0.10 -8.67 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 0.87 7.83 -51.93 -0.41 0.47 16 30 H 0.09 0.72 7.82 -51.93 -0.41 0.31 16 31 H 0.13 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.13 0.71 7.67 -51.93 -0.40 0.31 16 33 H 0.40 4.22 6.35 -40.82 -0.26 3.96 16 34 H 0.11 1.29 6.40 -52.49 -0.34 0.95 16 35 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 36 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 37 H 0.13 2.73 5.64 -52.48 -0.30 2.43 16 38 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 336.15 15.07 5.07 5.07 Total: -1.00 -38.08 336.15 -5.92 -44.00 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -3.60 Total: 5.82 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -2.26 Total: 3.07 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: 0.11 Total: -41.90 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -0.22 Total: -31.40 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -38.08 -5.92 -44.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848047105.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.894 kcal (2) G-P(sol) polarization free energy of solvation -38.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds