Wall clock time and date at job start Tue Mar 31 2020 11:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.33874 * 122.75987 * 2 1 4 4 O 1.21234 * 125.39533 * 359.97438 * 3 2 1 5 5 C 1.51313 * 109.20894 * 179.84534 * 3 2 1 6 6 C 1.54234 * 103.54951 * 0.38422 * 5 3 2 7 7 H 1.09005 * 110.60578 * 241.25777 * 6 5 3 8 8 N 1.46504 * 110.73532 * 118.36270 * 6 5 3 9 9 C 1.34778 * 119.99852 * 159.33488 * 8 6 5 10 10 O 1.21584 * 120.00255 * 359.97438 * 9 8 6 11 11 C 1.47536 * 119.99317 * 179.97438 * 9 8 6 12 12 C 1.39658 * 120.20592 * 359.97438 * 11 9 8 13 13 C 1.37823 * 119.92485 * 179.97438 * 12 11 9 14 14 C 1.38574 * 120.32022 * 0.02562 * 13 12 11 15 15 C 1.38024 * 120.40152 * 359.97438 * 14 13 12 16 16 C 1.38831 * 120.07316 * 359.73983 * 15 14 13 17 17 O 1.35524 * 120.16235 * 180.27843 * 16 15 14 18 18 C 1.34811 * 116.99556 * 354.39735 * 17 16 15 19 19 H 1.08003 * 120.00517 * 5.07049 * 18 17 16 20 20 C 1.38702 * 119.99617 * 185.06564 * 18 17 16 21 21 N 1.31518 * 120.00256 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99902 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46884 * 90.00065 * 22 20 18 24 24 H 1.48500 * 109.46997 * 209.99810 * 22 20 18 25 25 H 1.48502 * 109.46980 * 329.99933 * 22 20 18 26 26 C 1.33870 * 122.76382 * 180.29180 * 2 1 3 27 27 O 1.21223 * 125.39469 * 0.02562 * 26 2 1 28 28 H 1.09001 * 109.46630 * 269.70637 * 1 2 3 29 29 H 1.08994 * 109.47161 * 149.71312 * 1 2 3 30 30 H 1.08996 * 109.47169 * 29.70202 * 1 2 3 31 31 H 1.08998 * 110.79727 * 241.78153 * 5 3 2 32 32 H 1.08995 * 110.55034 * 118.87342 * 5 3 2 33 33 H 0.97006 * 119.99697 * 339.33004 * 8 6 5 34 34 H 1.08001 * 120.03485 * 359.95528 * 12 11 9 35 35 H 1.07998 * 119.83986 * 180.02562 * 13 12 11 36 36 H 1.07999 * 119.79307 * 179.97438 * 14 13 12 37 37 H 1.08005 * 119.95881 * 180.02562 * 15 14 13 38 38 H 0.97000 * 120.00457 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1895 1.1258 0.0000 4 8 1.7384 2.2511 -0.0004 5 6 3.6605 0.7713 0.0039 6 6 3.6605 -0.7711 -0.0039 7 1 4.1477 -1.1592 0.8906 8 7 4.3160 -1.2837 -1.2097 9 6 4.7942 -2.5435 -1.2329 10 8 4.6821 -3.2545 -0.2530 11 6 5.4538 -3.0598 -2.4474 12 6 5.5845 -2.2470 -3.5755 13 6 6.2021 -2.7350 -4.7068 14 6 6.6947 -4.0301 -4.7315 15 6 6.5728 -4.8449 -3.6241 16 6 5.9588 -4.3683 -2.4738 17 8 5.8432 -5.1649 -1.3836 18 6 6.2397 -6.4465 -1.5173 19 1 6.7036 -6.7753 -2.4355 20 6 6.0518 -7.3428 -0.4756 21 7 5.4864 -6.9426 0.6424 22 14 6.6018 -9.1184 -0.6606 23 1 8.0050 -9.2531 -0.1938 24 1 5.7230 -9.9961 0.1534 25 1 6.5144 -9.5175 -2.0883 26 6 2.1895 -1.1257 -0.0057 27 8 1.7385 -2.2509 -0.0119 28 1 -0.3632 -0.0053 1.0277 29 1 -0.3633 -0.8873 -0.5182 30 1 -0.3633 0.8926 -0.5092 31 1 4.1476 1.1503 0.9023 32 1 4.1499 1.1594 -0.8893 33 1 4.4057 -0.7163 -1.9914 34 1 5.2016 -1.2372 -3.5615 35 1 6.3028 -2.1051 -5.5783 36 1 7.1768 -4.4039 -5.6226 37 1 6.9596 -5.8530 -3.6511 38 1 5.3547 -7.5694 1.3708 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848047105.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:34 Heat of formation + Delta-G solvation = -108.886302 kcal Electronic energy + Delta-G solvation = -26317.629832 eV Core-core repulsion = 22318.896348 eV Total energy + Delta-G solvation = -3998.733484 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.09742 -41.21824 -39.97669 -39.52968 -38.01303 -37.15955 -36.03502 -34.31730 -33.21414 -31.55415 -30.54933 -28.06209 -27.45300 -26.93748 -24.73056 -23.47500 -22.88683 -21.81568 -20.68396 -19.85066 -19.44452 -18.37848 -18.33040 -17.89855 -17.58509 -16.73645 -16.34284 -16.27279 -15.94713 -15.77635 -15.71123 -15.41687 -15.30838 -15.14257 -14.74710 -14.46404 -14.22301 -14.09377 -13.73704 -13.56831 -13.53971 -13.02130 -12.92127 -12.65670 -12.51912 -12.33248 -12.13032 -12.07353 -11.43292 -11.37366 -10.93667 -10.82203 -10.66710 -10.23433 -9.80346 -9.02285 -8.43479 -6.14432 0.12248 0.30572 0.75101 1.32599 1.36975 1.44197 1.48211 1.51605 2.08989 2.16050 2.18804 2.87538 3.00648 3.11993 3.20365 3.27262 3.48710 3.93090 4.05744 4.10636 4.18159 4.29995 4.32828 4.37056 4.53377 4.54932 4.66111 4.68721 4.71198 4.98581 5.08695 5.14913 5.27800 5.48928 5.62067 5.66169 5.72150 5.96444 6.15876 6.18938 6.55613 6.63450 6.95886 7.41343 7.81264 8.76746 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.015218 B = 0.003862 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.489337 B = 7247.632336 C = 8593.390139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.576 5.576 3 C 0.538 3.462 4 O -0.503 6.503 5 C -0.137 4.137 6 C 0.118 3.882 7 H 0.125 0.875 8 N -0.701 5.701 9 C 0.552 3.448 10 O -0.548 6.548 11 C -0.245 4.245 12 C -0.027 4.027 13 C -0.201 4.201 14 C -0.040 4.040 15 C -0.259 4.259 16 C 0.149 3.851 17 O -0.188 6.188 18 C -0.427 4.427 19 H 0.107 0.893 20 C -0.022 4.022 21 N -0.904 5.904 22 Si 1.020 2.980 23 H -0.260 1.260 24 H -0.275 1.275 25 H -0.249 1.249 26 C 0.507 3.493 27 O -0.506 6.506 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.167 0.833 32 H 0.165 0.835 33 H 0.421 0.579 34 H 0.167 0.833 35 H 0.165 0.835 36 H 0.152 0.848 37 H 0.121 0.879 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.885 17.731 -8.210 19.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.320 5.320 3 C 0.329 3.671 4 O -0.376 6.376 5 C -0.176 4.176 6 C 0.009 3.991 7 H 0.143 0.857 8 N -0.360 5.360 9 C 0.343 3.657 10 O -0.424 6.424 11 C -0.250 4.250 12 C -0.046 4.046 13 C -0.219 4.219 14 C -0.058 4.058 15 C -0.278 4.278 16 C 0.094 3.906 17 O -0.090 6.090 18 C -0.503 4.503 19 H 0.124 0.876 20 C -0.221 4.221 21 N -0.540 5.540 22 Si 0.839 3.161 23 H -0.185 1.185 24 H -0.200 1.200 25 H -0.172 1.172 26 C 0.294 3.706 27 O -0.376 6.376 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.122 0.878 31 H 0.184 0.816 32 H 0.182 0.818 33 H 0.261 0.739 34 H 0.184 0.816 35 H 0.183 0.817 36 H 0.170 0.830 37 H 0.139 0.861 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.645 17.151 -7.050 18.731 hybrid contribution -0.217 -1.237 0.203 1.272 sum -2.863 15.914 -6.846 17.559 Atomic orbital electron populations 1.22087 0.76434 1.04997 1.04526 1.46817 1.10479 1.09066 1.65615 1.21025 0.90681 0.82838 0.72572 1.90786 1.78291 1.21617 1.46954 1.22892 0.92721 0.90355 1.11664 1.21591 0.88313 0.96346 0.92873 0.85730 1.45412 1.60295 1.13988 1.16332 1.18557 0.77834 0.81586 0.87747 1.90981 1.56868 1.57460 1.37114 1.19216 1.13794 0.94555 0.97385 1.21339 0.94420 0.98699 0.90105 1.21190 1.04619 0.96425 0.99654 1.21442 0.94288 0.93657 0.96418 1.21297 1.09156 1.02575 0.94805 1.20105 0.91892 0.91096 0.87527 1.84172 1.72342 1.21297 1.31235 1.22021 1.41074 0.83490 1.03738 0.87591 1.26736 0.96231 1.05151 0.93976 1.70321 1.40868 1.37494 1.05281 0.84585 0.78434 0.73484 0.79608 1.18451 1.19958 1.17187 1.21941 0.91691 0.83586 0.73429 1.90838 1.78317 1.23533 1.44959 0.90004 0.90339 0.87792 0.81579 0.81754 0.73861 0.81601 0.81725 0.83022 0.86098 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.12 10.59 127.77 1.35 2.48 16 2 N -0.58 -12.67 2.95 -780.04 -2.30 -14.97 16 3 C 0.54 9.59 8.08 87.99 0.71 10.31 16 4 O -0.50 -11.14 17.47 -2.89 -0.05 -11.19 16 5 C -0.14 -1.57 6.79 30.46 0.21 -1.36 16 6 C 0.12 2.83 3.37 44.86 0.15 2.98 16 7 H 0.13 3.45 7.68 -2.38 -0.02 3.43 16 8 N -0.70 -18.77 5.11 -446.33 -2.28 -21.05 16 9 C 0.55 23.47 7.75 86.70 0.67 24.14 16 10 O -0.55 -31.21 14.88 16.92 0.25 -30.95 16 11 C -0.24 -10.08 5.89 -19.99 -0.12 -10.20 16 12 C -0.03 -0.74 9.53 22.51 0.21 -0.53 16 13 C -0.20 -4.93 10.02 22.25 0.22 -4.70 16 14 C -0.04 -1.19 10.03 22.30 0.22 -0.97 16 15 C -0.26 -10.84 9.16 22.36 0.20 -10.64 16 16 C 0.15 7.52 6.66 22.91 0.15 7.67 16 17 O -0.19 -11.87 7.84 0.83 0.01 -11.87 16 18 C -0.43 -25.84 9.49 67.93 0.64 -25.20 16 19 H 0.11 5.74 5.21 -2.91 -0.02 5.72 16 20 C -0.02 -1.29 5.49 84.85 0.47 -0.82 16 21 N -0.90 -59.52 13.67 21.62 0.30 -59.22 16 22 Si 1.02 44.47 29.55 68.60 2.03 46.50 16 23 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 25 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 26 C 0.51 15.11 7.71 87.99 0.68 15.79 16 27 O -0.51 -21.41 17.48 -2.85 -0.05 -21.46 16 28 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.08 1.61 7.83 -2.39 -0.02 1.59 16 30 H 0.10 1.56 7.82 -2.39 -0.02 1.54 16 31 H 0.17 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.16 0.76 7.67 -2.39 -0.02 0.74 16 33 H 0.42 6.97 6.35 -92.70 -0.59 6.38 16 34 H 0.17 2.62 6.40 -2.91 -0.02 2.60 16 35 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 36 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 37 H 0.12 5.19 5.64 -2.91 -0.02 5.17 16 38 H 0.27 16.32 8.31 -92.71 -0.77 15.55 16 Total: -1.00 -98.74 336.15 4.23 -94.51 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.55 Total: 20.74 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 5.78 Total: 8.95 kcal Atomic # 7 Polarization: -90.95 SS G_CDS: -4.29 Total: -95.24 kcal Atomic # 8 Polarization: -75.63 SS G_CDS: 0.16 Total: -75.47 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -98.74 4.23 -94.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848047105.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.374 kcal (2) G-P(sol) polarization free energy of solvation -98.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds