Wall clock time and date at job start Tue Mar 31 2020 12:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99718 * 2 1 4 4 H 1.48505 * 109.46973 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.47082 * 120.00126 * 3 2 1 6 6 H 1.48502 * 109.46939 * 240.00379 * 3 2 1 7 7 C 1.37880 * 120.00296 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99761 * 185.61389 * 7 2 1 9 9 C 1.50698 * 119.99592 * 5.61487 * 7 2 1 10 10 C 1.52998 * 115.55023 * 279.42932 * 9 7 2 11 11 N 1.46500 * 109.47221 * 295.27239 * 10 9 7 12 12 C 1.35308 * 125.86894 * 123.94660 * 11 10 9 13 13 C 1.35348 * 106.17926 * 180.02562 * 12 11 10 14 14 C 1.50697 * 126.75758 * 179.97438 * 13 12 11 15 15 N 1.46498 * 109.47001 * 95.00030 * 14 13 12 16 16 C 1.34775 * 120.00264 * 180.02562 * 15 14 13 17 17 O 1.21284 * 119.99874 * 359.97438 * 16 15 14 18 18 C 1.50702 * 120.00357 * 179.97438 * 16 15 14 19 19 F 1.39901 * 109.47364 * 179.97438 * 18 16 15 20 20 F 1.39892 * 109.47118 * 300.00152 * 18 16 15 21 21 F 1.39901 * 109.46745 * 60.00261 * 18 16 15 22 22 N 1.33780 * 106.49371 * 359.97438 * 13 12 11 23 23 N 1.28635 * 108.88564 * 359.73928 * 22 13 12 24 24 C 1.52999 * 117.49459 * 133.72674 * 9 7 2 25 25 C 1.53001 * 117.50076 * 65.10442 * 9 7 2 26 26 H 0.96998 * 120.00163 * 355.32226 * 1 2 3 27 27 H 1.08996 * 109.46874 * 55.27275 * 10 9 7 28 28 H 1.09001 * 109.47192 * 175.27277 * 10 9 7 29 29 H 1.08005 * 126.91301 * 359.97438 * 12 11 10 30 30 H 1.08998 * 109.47474 * 214.99911 * 14 13 12 31 31 H 1.09000 * 109.46739 * 335.00277 * 14 13 12 32 32 H 0.97003 * 120.00099 * 359.97438 * 15 14 13 33 33 H 1.08997 * 117.50526 * 359.97438 * 24 9 7 34 34 H 1.09005 * 117.50022 * 145.01992 * 24 9 7 35 35 H 1.09002 * 117.50086 * 214.97133 * 25 9 7 36 36 H 1.08999 * 117.49634 * 0.02562 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1028 1.6965 -1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0807 -1.1962 0.0910 9 6 1.2565 -2.4959 -0.1288 10 6 0.6182 -3.0199 1.1592 11 7 1.6684 -3.3467 2.1268 12 6 1.7736 -2.8496 3.3809 13 6 2.8801 -3.4138 3.9187 14 6 3.4290 -3.1814 5.3027 15 7 2.9342 -4.2236 6.2056 16 6 3.2965 -4.2183 7.5038 17 8 4.0325 -3.3509 7.9244 18 6 2.7870 -5.2901 8.4327 19 9 3.2967 -5.0744 9.7176 20 9 1.3893 -5.2476 8.4717 21 9 3.2028 -6.5435 7.9709 22 7 3.3908 -4.2184 2.9798 23 7 2.6465 -4.1606 1.9322 24 6 1.7995 -3.5279 -1.1193 25 6 0.5165 -2.7591 -1.4418 26 1 -0.4850 0.8372 0.0685 27 1 -0.0361 -2.2551 1.5775 28 1 0.0363 -3.9148 0.9384 29 1 1.1088 -2.1438 3.8567 30 1 4.5181 -3.2143 5.2720 31 1 3.1050 -2.2049 5.6628 32 1 2.3453 -4.9171 5.8693 33 1 2.6974 -3.2652 -1.6785 34 1 1.7020 -4.5806 -0.8534 35 1 -0.4249 -3.3060 -1.3882 36 1 0.5712 -1.9908 -2.2131 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849144996.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:27 Heat of formation + Delta-G solvation = -62.616953 kcal Electronic energy + Delta-G solvation = -26164.403475 eV Core-core repulsion = 21658.112391 eV Total energy + Delta-G solvation = -4506.291084 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.60803 -48.13486 -48.09393 -42.81485 -40.05617 -37.10740 -35.65262 -33.36055 -32.21359 -31.42901 -28.68561 -27.35080 -25.94764 -25.59851 -21.86452 -21.82277 -21.30414 -21.16823 -19.70782 -19.29262 -19.05693 -18.89494 -16.98875 -16.59323 -16.04772 -15.64897 -15.59864 -15.35026 -14.87899 -14.84885 -14.82694 -14.50132 -14.38274 -14.21626 -14.20515 -13.92655 -13.61056 -13.49470 -13.21758 -12.86616 -12.11082 -11.85684 -11.27340 -11.16947 -11.07175 -10.82078 -10.70983 -10.56377 -10.40579 -10.14687 -9.65219 -9.43748 -9.10657 -8.93755 -8.71120 -8.43973 -6.32077 -4.39371 1.50054 1.52360 2.11926 2.62764 2.96177 3.02298 3.15522 3.20969 3.25313 3.44515 3.82430 3.85801 4.19817 4.41406 4.87606 4.96195 5.09486 5.25621 5.39897 5.46643 5.64398 5.71986 5.75540 5.96952 6.16328 6.24621 6.34464 6.52000 6.62429 6.69513 6.81089 7.04551 7.15681 7.25955 7.28455 7.62715 8.11389 8.64311 8.97554 9.29417 10.76029 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.019804 B = 0.002985 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.485763 B = 9376.913833 C =10074.018616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.075 3.925 3 Si 0.892 3.108 4 H -0.285 1.285 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.497 4.497 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.147 3.853 11 N -0.246 5.246 12 C -0.013 4.013 13 C -0.078 4.078 14 C 0.216 3.784 15 N -0.689 5.689 16 C 0.483 3.517 17 O -0.480 6.480 18 C 0.451 3.549 19 F -0.155 7.155 20 F -0.168 7.168 21 F -0.167 7.167 22 N -0.273 5.273 23 N -0.067 5.067 24 C -0.190 4.190 25 C -0.150 4.150 26 H 0.265 0.735 27 H 0.113 0.887 28 H 0.073 0.927 29 H 0.185 0.815 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.412 0.588 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.602 -8.198 12.440 14.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.129 4.129 3 Si 0.719 3.281 4 H -0.210 1.210 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.534 4.534 8 H 0.077 0.923 9 C 0.023 3.977 10 C 0.027 3.973 11 N -0.036 5.036 12 C -0.168 4.168 13 C -0.217 4.217 14 C 0.092 3.908 15 N -0.342 5.342 16 C 0.260 3.740 17 O -0.353 6.353 18 C 0.393 3.607 19 F -0.136 7.136 20 F -0.149 7.149 21 F -0.148 7.148 22 N -0.140 5.140 23 N -0.047 5.047 24 C -0.227 4.227 25 C -0.189 4.189 26 H 0.075 0.925 27 H 0.131 0.869 28 H 0.091 0.909 29 H 0.202 0.798 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.248 0.752 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.407 -8.388 11.628 14.343 hybrid contribution -0.706 1.307 0.586 1.597 sum -0.299 -7.080 12.214 14.121 Atomic orbital electron populations 1.69909 1.05852 1.27433 1.48528 1.24971 0.94873 0.99059 0.93976 0.86651 0.79744 0.82671 0.79057 1.21044 1.20091 1.19968 1.20346 0.92921 0.88320 1.51834 0.92287 1.18895 0.99003 0.94565 0.85205 1.22076 0.85422 0.99879 0.89915 1.47547 1.19419 1.26039 1.10614 1.23365 1.01836 1.04255 0.87356 1.21412 0.97882 1.04484 0.97890 1.19476 0.99747 0.90012 0.81532 1.46059 1.49475 1.31228 1.07389 1.20175 0.83615 0.86391 0.83799 1.90890 1.34095 1.35281 1.75028 1.20300 0.76332 0.82448 0.81641 1.93265 1.86761 1.94576 1.38973 1.93268 1.28780 1.96355 1.96535 1.93278 1.89885 1.43256 1.88425 1.75023 1.22144 1.19541 0.97285 1.78278 0.96264 1.11579 1.18588 1.22939 0.97740 0.95801 1.06246 1.22628 0.93390 1.01702 1.01134 0.92544 0.86923 0.90929 0.79789 0.88729 0.88681 0.75185 0.90139 0.90895 0.91450 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.93 13.10 55.43 0.73 -21.20 16 2 C 0.08 1.85 5.42 -17.82 -0.10 1.76 16 3 Si 0.89 19.74 29.54 -169.99 -5.02 14.72 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.50 -12.31 8.71 -34.44 -0.30 -12.61 16 8 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 9 C 0.02 0.53 1.32 -155.66 -0.20 0.33 16 10 C 0.15 2.74 6.28 -4.04 -0.03 2.72 16 11 N -0.25 -4.46 3.33 -61.26 -0.20 -4.66 16 12 C -0.01 -0.21 11.50 -17.05 -0.20 -0.40 16 13 C -0.08 -1.16 6.61 -82.78 -0.55 -1.70 16 14 C 0.22 2.53 6.23 -5.20 -0.03 2.50 16 15 N -0.69 -7.07 5.55 -61.47 -0.34 -7.41 16 16 C 0.48 5.38 7.36 -10.99 -0.08 5.30 16 17 O -0.48 -6.76 16.61 5.55 0.09 -6.67 16 18 C 0.45 4.46 3.43 36.01 0.12 4.58 16 19 F -0.15 -1.69 16.92 2.25 0.04 -1.65 16 20 F -0.17 -1.56 17.30 2.25 0.04 -1.52 16 21 F -0.17 -1.62 17.30 2.25 0.04 -1.58 16 22 N -0.27 -4.95 12.41 33.29 0.41 -4.53 16 23 N -0.07 -1.30 12.87 60.35 0.78 -0.52 16 24 C -0.19 -3.82 9.86 -26.73 -0.26 -4.08 16 25 C -0.15 -3.08 9.67 -26.73 -0.26 -3.34 16 26 H 0.26 6.39 8.32 -40.82 -0.34 6.06 16 27 H 0.11 2.14 8.07 -51.93 -0.42 1.73 16 28 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 29 H 0.18 2.27 8.06 -52.48 -0.42 1.85 16 30 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.41 3.68 8.46 -40.82 -0.35 3.33 16 33 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 34 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 LS Contribution 340.32 15.07 5.13 5.13 Total: -1.00 -27.63 340.32 -3.89 -31.52 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -3.69 Total: 3.35 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -1.88 Total: -4.96 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 1.37 Total: -38.33 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: 0.09 Total: -6.67 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 0.12 Total: -4.76 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -27.63 -3.89 -31.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849144996.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.099 kcal (2) G-P(sol) polarization free energy of solvation -27.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds