Wall clock time and date at job start Tue Mar 31 2020 12:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99718 * 2 1 4 4 H 1.48505 * 109.46973 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.47082 * 120.00126 * 3 2 1 6 6 H 1.48502 * 109.46939 * 240.00379 * 3 2 1 7 7 C 1.37880 * 120.00296 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99761 * 185.61389 * 7 2 1 9 9 C 1.50698 * 119.99592 * 5.61487 * 7 2 1 10 10 C 1.52998 * 115.55023 * 279.42932 * 9 7 2 11 11 N 1.46500 * 109.47221 * 295.27239 * 10 9 7 12 12 C 1.35308 * 125.86894 * 123.94660 * 11 10 9 13 13 C 1.35348 * 106.17926 * 180.02562 * 12 11 10 14 14 C 1.50697 * 126.75758 * 179.97438 * 13 12 11 15 15 N 1.46498 * 109.47001 * 95.00030 * 14 13 12 16 16 C 1.34775 * 120.00264 * 180.02562 * 15 14 13 17 17 O 1.21284 * 119.99874 * 359.97438 * 16 15 14 18 18 C 1.50702 * 120.00357 * 179.97438 * 16 15 14 19 19 F 1.39901 * 109.47364 * 179.97438 * 18 16 15 20 20 F 1.39892 * 109.47118 * 300.00152 * 18 16 15 21 21 F 1.39901 * 109.46745 * 60.00261 * 18 16 15 22 22 N 1.33780 * 106.49371 * 359.97438 * 13 12 11 23 23 N 1.28635 * 108.88564 * 359.73928 * 22 13 12 24 24 C 1.52999 * 117.49459 * 133.72674 * 9 7 2 25 25 C 1.53001 * 117.50076 * 65.10442 * 9 7 2 26 26 H 0.96998 * 120.00163 * 355.32226 * 1 2 3 27 27 H 1.08996 * 109.46874 * 55.27275 * 10 9 7 28 28 H 1.09001 * 109.47192 * 175.27277 * 10 9 7 29 29 H 1.08005 * 126.91301 * 359.97438 * 12 11 10 30 30 H 1.08998 * 109.47474 * 214.99911 * 14 13 12 31 31 H 1.09000 * 109.46739 * 335.00277 * 14 13 12 32 32 H 0.97003 * 120.00099 * 359.97438 * 15 14 13 33 33 H 1.08997 * 117.50526 * 359.97438 * 24 9 7 34 34 H 1.09005 * 117.50022 * 145.01992 * 24 9 7 35 35 H 1.09002 * 117.50086 * 214.97133 * 25 9 7 36 36 H 1.08999 * 117.49634 * 0.02562 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1028 1.6965 -1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0807 -1.1962 0.0910 9 6 1.2565 -2.4959 -0.1288 10 6 0.6182 -3.0199 1.1592 11 7 1.6684 -3.3467 2.1268 12 6 1.7736 -2.8496 3.3809 13 6 2.8801 -3.4138 3.9187 14 6 3.4290 -3.1814 5.3027 15 7 2.9342 -4.2236 6.2056 16 6 3.2965 -4.2183 7.5038 17 8 4.0325 -3.3509 7.9244 18 6 2.7870 -5.2901 8.4327 19 9 3.2967 -5.0744 9.7176 20 9 1.3893 -5.2476 8.4717 21 9 3.2028 -6.5435 7.9709 22 7 3.3908 -4.2184 2.9798 23 7 2.6465 -4.1606 1.9322 24 6 1.7995 -3.5279 -1.1193 25 6 0.5165 -2.7591 -1.4418 26 1 -0.4850 0.8372 0.0685 27 1 -0.0361 -2.2551 1.5775 28 1 0.0363 -3.9148 0.9384 29 1 1.1088 -2.1438 3.8567 30 1 4.5181 -3.2143 5.2720 31 1 3.1050 -2.2049 5.6628 32 1 2.3453 -4.9171 5.8693 33 1 2.6974 -3.2652 -1.6785 34 1 1.7020 -4.5806 -0.8534 35 1 -0.4249 -3.3060 -1.3882 36 1 0.5712 -1.9908 -2.2131 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849144996.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:27 Heat of formation + Delta-G solvation = -79.751421 kcal Electronic energy + Delta-G solvation = -26165.146482 eV Core-core repulsion = 21658.112391 eV Total energy + Delta-G solvation = -4507.034090 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.41450 -48.91921 -48.91719 -44.12598 -41.00496 -38.70790 -36.67207 -34.73449 -34.06369 -32.59645 -29.68248 -28.77299 -27.48339 -26.91406 -23.21621 -22.92003 -22.75849 -22.38671 -21.13219 -20.38893 -19.85703 -19.75489 -18.47188 -17.69548 -17.39596 -16.96948 -16.68438 -16.57712 -16.38877 -15.79815 -15.66205 -15.65406 -15.39238 -15.29808 -15.01702 -15.00922 -14.87791 -14.61763 -14.39861 -13.98379 -13.77582 -13.39661 -13.04241 -12.88913 -12.52963 -12.45702 -12.09374 -11.88640 -11.81491 -11.66284 -11.03246 -10.78466 -10.57489 -10.47087 -10.22661 -10.10024 -8.20083 -6.30878 0.57953 0.61565 0.87824 1.37153 1.41766 1.46598 1.49943 1.66605 2.06527 2.37118 2.58289 3.01778 3.02148 3.08270 3.27420 3.47254 3.78783 4.06130 4.14000 4.14626 4.43392 4.46144 4.54808 4.60926 4.74762 4.80787 5.00651 5.08787 5.14785 5.24578 5.42169 5.59365 5.68197 5.80952 5.84051 6.31190 6.40437 6.71505 7.38846 7.64729 8.86629 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.019804 B = 0.002985 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.485763 B = 9376.913833 C =10074.018616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.047 3.953 3 Si 0.934 3.066 4 H -0.278 1.278 5 H -0.277 1.277 6 H -0.282 1.282 7 C -0.510 4.510 8 H 0.032 0.968 9 C 0.006 3.994 10 C 0.157 3.843 11 N -0.255 5.255 12 C -0.014 4.014 13 C -0.067 4.067 14 C 0.221 3.779 15 N -0.679 5.679 16 C 0.489 3.511 17 O -0.511 6.511 18 C 0.463 3.537 19 F -0.160 7.160 20 F -0.161 7.161 21 F -0.164 7.164 22 N -0.293 5.293 23 N -0.100 5.100 24 C -0.180 4.180 25 C -0.146 4.146 26 H 0.266 0.734 27 H 0.109 0.891 28 H 0.095 0.905 29 H 0.215 0.785 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.421 0.579 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.397 -8.441 13.483 15.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.156 4.156 3 Si 0.761 3.239 4 H -0.203 1.203 5 H -0.202 1.202 6 H -0.208 1.208 7 C -0.548 4.548 8 H 0.050 0.950 9 C 0.005 3.995 10 C 0.036 3.964 11 N -0.045 5.045 12 C -0.168 4.168 13 C -0.207 4.207 14 C 0.097 3.903 15 N -0.331 5.331 16 C 0.267 3.733 17 O -0.385 6.385 18 C 0.405 3.595 19 F -0.141 7.141 20 F -0.143 7.143 21 F -0.145 7.145 22 N -0.159 5.159 23 N -0.080 5.080 24 C -0.217 4.217 25 C -0.184 4.184 26 H 0.076 0.924 27 H 0.127 0.873 28 H 0.113 0.887 29 H 0.231 0.769 30 H 0.109 0.891 31 H 0.131 0.869 32 H 0.258 0.742 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.397 -8.657 12.658 15.340 hybrid contribution -0.419 1.373 0.265 1.459 sum -0.816 -7.284 12.923 14.857 Atomic orbital electron populations 1.69942 1.06213 1.27844 1.48868 1.25361 0.95489 1.00750 0.93958 0.85990 0.78856 0.80619 0.78418 1.20305 1.20210 1.20817 1.20387 0.91876 0.90301 1.52228 0.95014 1.18962 0.99708 0.93949 0.86911 1.21863 0.85290 1.00652 0.88552 1.47520 1.19260 1.26367 1.11363 1.23944 1.02253 1.04109 0.86483 1.21779 0.97272 1.03154 0.98457 1.19483 0.99504 0.91142 0.80183 1.45905 1.49139 1.31039 1.06997 1.20256 0.83021 0.86181 0.83850 1.90883 1.35502 1.36572 1.75592 1.19952 0.76475 0.82073 0.81047 1.93259 1.86909 1.94613 1.39305 1.93287 1.28189 1.96313 1.96469 1.93292 1.89905 1.42941 1.88359 1.74980 1.22477 1.20584 0.97856 1.78253 0.97234 1.12999 1.19518 1.22875 0.97015 0.96452 1.05375 1.22577 0.94560 1.01343 0.99943 0.92448 0.87298 0.88660 0.76874 0.89065 0.86895 0.74200 0.91558 0.89160 0.89073 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -43.62 13.10 21.45 0.28 -43.34 16 2 C 0.05 2.30 5.42 84.66 0.46 2.76 16 3 Si 0.93 40.19 29.54 68.60 2.03 42.21 16 4 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.51 -25.35 8.71 25.60 0.22 -25.13 16 8 H 0.03 1.71 7.82 -2.91 -0.02 1.69 16 9 C 0.01 0.25 1.32 -52.93 -0.07 0.18 16 10 C 0.16 5.60 6.28 86.38 0.54 6.14 16 11 N -0.25 -8.88 3.33 -347.74 -1.16 -10.04 16 12 C -0.01 -0.39 11.50 83.49 0.96 0.57 16 13 C -0.07 -1.88 6.61 41.59 0.28 -1.61 16 14 C 0.22 4.74 6.23 85.63 0.53 5.28 16 15 N -0.68 -12.53 5.55 -466.80 -2.59 -15.12 16 16 C 0.49 10.04 7.36 87.66 0.64 10.68 16 17 O -0.51 -13.69 16.61 -3.04 -0.05 -13.74 16 18 C 0.46 8.32 3.43 71.24 0.24 8.56 16 19 F -0.16 -3.26 16.92 44.97 0.76 -2.50 16 20 F -0.16 -2.66 17.30 44.97 0.78 -1.88 16 21 F -0.16 -2.87 17.30 44.97 0.78 -2.09 16 22 N -0.29 -10.33 12.41 -48.60 -0.60 -10.93 16 23 N -0.10 -3.83 12.87 37.02 0.48 -3.35 16 24 C -0.18 -7.12 9.86 30.59 0.30 -6.82 16 25 C -0.15 -5.86 9.67 30.60 0.30 -5.56 16 26 H 0.27 12.57 8.32 -92.71 -0.77 11.79 16 27 H 0.11 3.96 8.07 -2.39 -0.02 3.94 16 28 H 0.10 2.93 8.10 -2.39 -0.02 2.91 16 29 H 0.21 4.64 8.06 -2.91 -0.02 4.62 16 30 H 0.09 2.08 8.14 -2.39 -0.02 2.07 16 31 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.42 6.56 8.46 -92.71 -0.78 5.77 16 33 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 34 H 0.09 3.24 8.14 -2.38 -0.02 3.22 16 35 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 36 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 Total: -1.00 -58.12 340.32 5.48 -52.65 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 0.36 Total: 13.08 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: 4.41 Total: -4.96 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -3.59 Total: -82.78 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.05 Total: -13.74 kcal Atomic # 9 Polarization: -8.79 SS G_CDS: 2.32 Total: -6.47 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.21 kcal Total: -58.12 5.48 -52.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849144996.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.102 kcal (2) G-P(sol) polarization free energy of solvation -58.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds