Wall clock time and date at job start Tue Mar 31 2020 12:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00425 * 2 1 4 4 H 1.48503 * 109.47389 * 270.00085 * 3 2 1 5 5 H 1.48508 * 109.47106 * 30.00095 * 3 2 1 6 6 H 1.48504 * 109.47572 * 149.99842 * 3 2 1 7 7 C 1.37882 * 119.99723 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99505 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00144 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.50358 * 299.92664 * 9 7 2 11 11 C 1.53124 * 109.50255 * 60.00033 * 9 7 2 12 12 C 1.53123 * 109.16281 * 177.59506 * 11 9 7 13 13 C 1.53040 * 109.27710 * 302.34976 * 12 11 9 14 14 N 1.46850 * 109.52681 * 59.17334 * 13 12 11 15 15 C 1.39088 * 110.99713 * 174.15984 * 14 13 12 16 16 C 1.36566 * 120.69998 * 296.04902 * 15 14 13 17 17 C 1.39664 * 121.75066 * 179.97438 * 16 15 14 18 18 C 1.35591 * 122.71801 * 0.02562 * 17 16 15 19 19 N 1.48079 * 119.94714 * 180.02562 * 18 17 16 20 20 O 1.21803 * 119.99963 * 359.97438 * 19 18 17 21 21 O 1.21799 * 119.99835 * 179.72487 * 19 18 17 22 22 C 1.40658 * 120.10294 * 0.26998 * 18 17 16 23 23 N 1.31077 * 138.76185 * 179.75465 * 22 18 17 24 24 O 1.21498 * 109.06080 * 179.97438 * 23 22 18 25 25 N 1.21522 * 116.26839 * 359.41325 * 24 23 22 26 26 C 1.30621 * 109.10087 * 0.70068 * 25 24 23 27 27 C 1.46845 * 111.19824 * 298.26048 * 14 13 12 28 28 H 0.96998 * 119.99845 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.52225 * 57.69206 * 11 9 7 30 30 H 1.08997 * 109.57594 * 297.53094 * 11 9 7 31 31 H 1.08999 * 109.50048 * 182.40498 * 12 11 9 32 32 H 1.08999 * 109.49762 * 62.28578 * 12 11 9 33 33 H 1.09007 * 109.45814 * 299.15898 * 13 12 11 34 34 H 1.08993 * 109.45410 * 179.19168 * 13 12 11 35 35 H 1.08001 * 119.12220 * 359.95637 * 16 15 14 36 36 H 1.08001 * 118.63892 * 180.02562 * 17 16 15 37 37 H 1.08999 * 109.46203 * 181.75337 * 27 14 13 38 38 H 1.08994 * 109.46430 * 301.72469 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6248 -2.5586 0.8884 11 6 0.3709 -2.5802 -1.2521 12 6 -0.3449 -3.9336 -1.2761 13 6 0.6952 -5.0558 -1.2445 14 7 1.5110 -4.9348 -0.0295 15 6 2.3796 -6.0137 0.0972 16 6 1.8980 -7.2803 0.2669 17 6 2.7499 -8.3794 0.3958 18 6 4.1008 -8.2675 0.3624 19 7 4.9464 -9.4747 0.5048 20 8 4.4283 -10.5672 0.6521 21 8 6.1598 -9.3759 0.4699 22 6 4.7003 -7.0057 0.1980 23 7 5.9020 -6.4879 0.1205 24 8 5.8072 -5.2860 -0.0296 25 7 4.6788 -4.8382 -0.0855 26 6 3.8237 -5.8160 0.0519 27 6 2.2448 -3.6630 -0.0071 28 1 -0.4850 0.8400 -0.0004 29 1 0.9924 -2.4810 -2.1420 30 1 -0.3671 -1.7782 -1.2319 31 1 -0.9400 -4.0144 -2.1858 32 1 -0.9961 -4.0163 -0.4060 33 1 1.3373 -4.9806 -2.1221 34 1 0.1883 -6.0207 -1.2470 35 1 0.8298 -7.4361 0.3026 36 1 2.3148 -9.3591 0.5275 37 1 2.8634 -3.6163 0.8891 38 1 2.8796 -3.5943 -0.8904 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853761738.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:24 Heat of formation + Delta-G solvation = 145.744055 kcal Electronic energy + Delta-G solvation = -26781.026077 eV Core-core repulsion = 22825.626944 eV Total energy + Delta-G solvation = -3955.399133 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.98527 -42.15353 -40.28030 -37.94164 -36.58413 -35.19813 -34.26909 -33.69008 -32.42039 -30.66003 -30.12218 -26.73518 -25.84162 -25.51845 -24.86174 -23.48553 -21.96204 -21.20442 -19.78016 -19.37175 -19.19549 -18.77329 -18.42434 -17.76032 -17.54633 -17.19355 -16.12085 -15.49247 -14.70690 -14.64088 -14.22368 -13.93105 -13.65501 -13.29942 -13.08959 -13.07393 -12.69213 -12.61281 -12.31417 -12.01948 -11.86030 -11.59687 -11.21491 -11.16077 -11.13155 -11.06657 -10.89732 -10.57828 -10.48173 -10.17461 -10.06512 -9.77564 -9.51002 -9.02601 -8.52822 -8.22049 -6.19179 -4.26227 -0.83000 0.61694 0.68913 1.21266 1.53088 2.60408 2.62181 2.90365 3.18454 3.19939 3.27542 3.31076 3.54191 4.03951 4.19818 4.29850 4.54474 4.58491 4.83546 4.99553 5.10825 5.14644 5.20670 5.30616 5.45368 5.57906 5.73973 5.87688 5.98490 6.17856 6.26601 6.29617 6.40626 6.56453 6.80319 6.93478 7.13778 7.51131 7.60863 7.70301 7.86462 8.13863 8.17261 8.76655 9.40043 10.87172 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.021406 B = 0.003686 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.713563 B = 7593.895853 C = 8693.686530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.066 3.934 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.058 0.942 9 C 0.057 3.943 10 H 0.038 0.962 11 C -0.117 4.117 12 C -0.122 4.122 13 C 0.063 3.937 14 N -0.470 5.470 15 C 0.270 3.730 16 C -0.193 4.193 17 C 0.067 3.933 18 C -0.069 4.069 19 N 0.042 4.958 20 O -0.177 6.177 21 O -0.155 6.155 22 C 0.067 3.933 23 N -0.323 5.323 24 O 0.379 5.621 25 N -0.292 5.292 26 C -0.016 4.016 27 C 0.052 3.948 28 H 0.262 0.738 29 H 0.036 0.964 30 H 0.100 0.900 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.080 0.920 35 H 0.168 0.832 36 H 0.170 0.830 37 H 0.074 0.926 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.552 -13.756 -1.844 13.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.558 4.558 8 H 0.076 0.924 9 C 0.038 3.962 10 H 0.056 0.944 11 C -0.155 4.155 12 C -0.160 4.160 13 C -0.059 4.059 14 N -0.178 5.178 15 C 0.162 3.838 16 C -0.219 4.219 17 C 0.044 3.956 18 C -0.158 4.158 19 N 0.558 4.442 20 O -0.386 6.386 21 O -0.371 6.371 22 C -0.091 4.091 23 N -0.046 5.046 24 O 0.140 5.860 25 N -0.008 5.008 26 C -0.175 4.175 27 C -0.072 4.072 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.118 0.882 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.186 0.814 36 H 0.187 0.813 37 H 0.092 0.908 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.508 -12.225 -1.655 12.347 hybrid contribution 0.494 0.148 -0.276 0.585 sum 1.002 -12.077 -1.931 12.271 Atomic orbital electron populations 1.69855 1.05910 1.26780 1.50030 1.24911 0.94874 0.99170 0.94630 0.86559 0.79953 0.83110 0.78240 1.20577 1.21111 1.19751 1.21030 0.93053 0.90041 1.51695 0.92366 1.18720 0.92196 0.90019 0.95250 0.94412 1.21773 1.00390 0.94768 0.98605 1.21798 0.96798 0.95760 1.01628 1.22458 0.95465 1.01197 0.86815 1.58841 1.20989 1.02892 1.35124 1.19660 0.83799 0.92708 0.87679 1.20331 1.01590 0.88560 1.11426 1.20736 0.89361 1.01853 0.83688 1.19138 0.90561 0.81702 1.24435 1.43285 1.01515 1.01771 0.97665 1.94507 1.76866 1.13279 1.53976 1.94603 0.95549 1.92966 1.53981 1.21710 0.88592 0.95126 1.03641 1.75548 1.19485 0.92027 1.17557 1.85505 1.24348 1.16735 1.59390 1.75516 0.91001 1.21246 1.13016 1.24264 0.97377 0.87700 1.08126 1.22961 0.96835 0.85920 1.01525 0.92776 0.94487 0.88188 0.91872 0.91290 0.93102 0.90191 0.81418 0.81285 0.90781 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.44 11.35 55.43 0.63 -22.81 16 2 C 0.07 1.71 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 20.17 29.54 -169.99 -5.02 15.15 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.52 -13.13 8.56 -34.44 -0.29 -13.43 16 8 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.06 1.26 2.26 -91.69 -0.21 1.05 16 10 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 11 C -0.12 -2.38 5.02 -26.60 -0.13 -2.51 16 12 C -0.12 -1.86 6.09 -26.65 -0.16 -2.02 16 13 C 0.06 0.82 5.32 -3.83 -0.02 0.80 16 14 N -0.47 -6.97 4.67 -169.71 -0.79 -7.76 16 15 C 0.27 3.49 5.57 -82.14 -0.46 3.03 16 16 C -0.19 -1.80 9.12 -39.65 -0.36 -2.17 16 17 C 0.07 0.62 9.40 -40.00 -0.38 0.25 16 18 C -0.07 -0.89 6.85 -79.95 -0.55 -1.44 16 19 N 0.04 0.62 4.46 33.96 0.15 0.77 16 20 O -0.18 -2.46 18.36 -29.46 -0.54 -3.00 16 21 O -0.16 -2.54 18.47 -29.46 -0.54 -3.08 16 22 C 0.07 0.96 7.19 -83.05 -0.60 0.36 16 23 N -0.32 -4.88 11.95 31.89 0.38 -4.50 16 24 O 0.38 5.50 11.67 26.92 0.31 5.82 16 25 N -0.29 -4.54 9.86 32.74 0.32 -4.21 16 26 C -0.02 -0.24 6.65 -81.12 -0.54 -0.78 16 27 C 0.05 0.97 3.27 -3.83 -0.01 0.95 16 28 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.10 2.33 6.15 -51.93 -0.32 2.01 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.76 7.16 -51.93 -0.37 0.39 16 35 H 0.17 1.09 7.60 -52.49 -0.40 0.70 16 36 H 0.17 1.06 7.47 -52.49 -0.39 0.67 16 37 H 0.07 1.44 7.19 -51.93 -0.37 1.07 16 38 H 0.05 1.04 7.10 -51.93 -0.37 0.67 16 LS Contribution 321.68 15.07 4.85 4.85 Total: -1.00 -27.73 321.68 -7.94 -35.67 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: -3.88 Total: -2.62 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -3.81 Total: -14.28 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.69 Total: -38.51 kcal Atomic # 8 Polarization: 0.51 SS G_CDS: -0.77 Total: -0.27 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.73 -7.94 -35.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853761738.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.414 kcal (2) G-P(sol) polarization free energy of solvation -27.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds