Wall clock time and date at job start Tue Mar 31 2020 12:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00425 * 2 1 4 4 H 1.48503 * 109.47389 * 270.00085 * 3 2 1 5 5 H 1.48508 * 109.47106 * 30.00095 * 3 2 1 6 6 H 1.48504 * 109.47572 * 149.99842 * 3 2 1 7 7 C 1.37882 * 119.99723 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99505 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00144 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.50358 * 299.92664 * 9 7 2 11 11 C 1.53124 * 109.50255 * 60.00033 * 9 7 2 12 12 C 1.53123 * 109.16281 * 177.59506 * 11 9 7 13 13 C 1.53040 * 109.27710 * 302.34976 * 12 11 9 14 14 N 1.46850 * 109.52681 * 59.17334 * 13 12 11 15 15 C 1.39088 * 110.99713 * 174.15984 * 14 13 12 16 16 C 1.36566 * 120.69998 * 296.04902 * 15 14 13 17 17 C 1.39664 * 121.75066 * 179.97438 * 16 15 14 18 18 C 1.35591 * 122.71801 * 0.02562 * 17 16 15 19 19 N 1.48079 * 119.94714 * 180.02562 * 18 17 16 20 20 O 1.21803 * 119.99963 * 359.97438 * 19 18 17 21 21 O 1.21799 * 119.99835 * 179.72487 * 19 18 17 22 22 C 1.40658 * 120.10294 * 0.26998 * 18 17 16 23 23 N 1.31077 * 138.76185 * 179.75465 * 22 18 17 24 24 O 1.21498 * 109.06080 * 179.97438 * 23 22 18 25 25 N 1.21522 * 116.26839 * 359.41325 * 24 23 22 26 26 C 1.30621 * 109.10087 * 0.70068 * 25 24 23 27 27 C 1.46845 * 111.19824 * 298.26048 * 14 13 12 28 28 H 0.96998 * 119.99845 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.52225 * 57.69206 * 11 9 7 30 30 H 1.08997 * 109.57594 * 297.53094 * 11 9 7 31 31 H 1.08999 * 109.50048 * 182.40498 * 12 11 9 32 32 H 1.08999 * 109.49762 * 62.28578 * 12 11 9 33 33 H 1.09007 * 109.45814 * 299.15898 * 13 12 11 34 34 H 1.08993 * 109.45410 * 179.19168 * 13 12 11 35 35 H 1.08001 * 119.12220 * 359.95637 * 16 15 14 36 36 H 1.08001 * 118.63892 * 180.02562 * 17 16 15 37 37 H 1.08999 * 109.46203 * 181.75337 * 27 14 13 38 38 H 1.08994 * 109.46430 * 301.72469 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6248 -2.5586 0.8884 11 6 0.3709 -2.5802 -1.2521 12 6 -0.3449 -3.9336 -1.2761 13 6 0.6952 -5.0558 -1.2445 14 7 1.5110 -4.9348 -0.0295 15 6 2.3796 -6.0137 0.0972 16 6 1.8980 -7.2803 0.2669 17 6 2.7499 -8.3794 0.3958 18 6 4.1008 -8.2675 0.3624 19 7 4.9464 -9.4747 0.5048 20 8 4.4283 -10.5672 0.6521 21 8 6.1598 -9.3759 0.4699 22 6 4.7003 -7.0057 0.1980 23 7 5.9020 -6.4879 0.1205 24 8 5.8072 -5.2860 -0.0296 25 7 4.6788 -4.8382 -0.0855 26 6 3.8237 -5.8160 0.0519 27 6 2.2448 -3.6630 -0.0071 28 1 -0.4850 0.8400 -0.0004 29 1 0.9924 -2.4810 -2.1420 30 1 -0.3671 -1.7782 -1.2319 31 1 -0.9400 -4.0144 -2.1858 32 1 -0.9961 -4.0163 -0.4060 33 1 1.3373 -4.9806 -2.1221 34 1 0.1883 -6.0207 -1.2470 35 1 0.8298 -7.4361 0.3026 36 1 2.3148 -9.3591 0.5275 37 1 2.8634 -3.6163 0.8891 38 1 2.8796 -3.5943 -0.8904 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853761738.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:23 Heat of formation + Delta-G solvation = 129.768811 kcal Electronic energy + Delta-G solvation = -26781.718815 eV Core-core repulsion = 22825.626944 eV Total energy + Delta-G solvation = -3956.091871 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.07617 -43.23325 -41.39172 -39.08261 -37.68241 -36.44041 -35.67864 -34.73426 -33.93953 -31.99643 -31.44277 -27.81626 -27.31992 -26.69771 -26.13066 -24.76799 -23.37002 -22.32508 -20.91011 -20.65429 -20.33279 -19.90203 -19.49436 -18.89724 -18.62874 -18.60728 -17.63491 -16.74798 -16.34606 -15.86369 -15.42123 -15.01839 -14.83004 -14.51535 -14.39540 -14.20663 -13.97861 -13.91084 -13.52460 -13.16618 -13.05889 -12.89799 -12.75864 -12.71766 -12.61687 -12.30494 -12.29468 -11.97716 -11.90292 -11.58739 -11.48504 -11.15360 -11.05661 -10.72612 -10.44532 -9.30286 -8.16130 -6.28941 -1.82293 -0.48505 -0.28467 0.18263 0.47174 1.37054 1.39814 1.48398 1.61596 1.68277 1.85759 2.11458 2.34413 2.49367 3.02736 3.12553 3.29310 3.55237 3.70402 3.81856 3.98171 4.04701 4.18509 4.31035 4.37022 4.47633 4.57360 4.71657 4.77333 4.85834 4.94378 4.98960 5.18538 5.20102 5.39728 5.54257 5.58131 5.77789 5.91593 6.07677 6.30482 6.48176 6.80443 7.04969 7.39441 8.88313 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.021406 B = 0.003686 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.713563 B = 7593.895853 C = 8693.686530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.946 3.054 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.540 4.540 8 H 0.046 0.954 9 C 0.055 3.945 10 H 0.006 0.994 11 C -0.112 4.112 12 C -0.113 4.113 13 C 0.062 3.938 14 N -0.473 5.473 15 C 0.244 3.756 16 C -0.149 4.149 17 C 0.100 3.900 18 C -0.087 4.087 19 N 0.043 4.957 20 O -0.134 6.134 21 O -0.226 6.226 22 C 0.060 3.940 23 N -0.343 5.343 24 O 0.373 5.627 25 N -0.319 5.319 26 C -0.020 4.020 27 C 0.075 3.925 28 H 0.262 0.738 29 H 0.025 0.975 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.134 0.866 35 H 0.217 0.783 36 H 0.217 0.783 37 H 0.055 0.945 38 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.665 -16.715 -2.126 16.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.176 4.176 3 Si 0.772 3.228 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.578 4.578 8 H 0.065 0.935 9 C 0.036 3.964 10 H 0.024 0.976 11 C -0.150 4.150 12 C -0.151 4.151 13 C -0.060 4.060 14 N -0.182 5.182 15 C 0.137 3.863 16 C -0.175 4.175 17 C 0.077 3.923 18 C -0.176 4.176 19 N 0.556 4.444 20 O -0.357 6.357 21 O -0.425 6.425 22 C -0.097 4.097 23 N -0.067 5.067 24 O 0.138 5.862 25 N -0.037 5.037 26 C -0.178 4.178 27 C -0.051 4.051 28 H 0.072 0.928 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.152 0.848 35 H 0.233 0.767 36 H 0.233 0.767 37 H 0.074 0.926 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.541 -15.122 -1.952 15.325 hybrid contribution 1.039 0.906 -0.159 1.388 sum -0.502 -14.216 -2.111 14.380 Atomic orbital electron populations 1.69972 1.06794 1.27243 1.50714 1.25558 0.95630 1.01850 0.94608 0.85735 0.78781 0.79957 0.78283 1.20097 1.20699 1.19844 1.21401 0.92850 0.92104 1.51455 0.93547 1.18599 0.92580 0.90396 0.94789 0.97550 1.21558 0.99305 0.97294 0.96891 1.21674 0.97195 0.93342 1.02880 1.22619 0.94709 1.02568 0.86133 1.58865 1.21018 1.01559 1.36796 1.19876 0.82571 0.93634 0.90174 1.20906 1.03678 0.86314 1.06614 1.21333 0.87406 1.03841 0.79722 1.19455 0.91567 0.80415 1.26179 1.43483 1.01470 1.02241 0.97255 1.94456 1.76498 1.13689 1.51087 1.94640 0.96514 1.93351 1.57966 1.22007 0.88262 0.95952 1.03515 1.75495 1.20543 0.92298 1.18404 1.85485 1.24158 1.16655 1.59950 1.75453 0.91604 1.22326 1.14282 1.24612 0.98316 0.87275 1.07645 1.22383 0.95522 0.87123 1.00107 0.92843 0.95623 0.91668 0.89222 0.91499 0.93277 0.84847 0.76670 0.76668 0.92647 0.93888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.44 11.35 21.45 0.24 -49.20 16 2 C 0.02 1.24 5.30 84.66 0.45 1.69 16 3 Si 0.95 42.40 29.54 68.60 2.03 44.42 16 4 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.54 -28.47 8.56 25.60 0.22 -28.25 16 8 H 0.05 2.48 7.74 -2.91 -0.02 2.46 16 9 C 0.06 2.53 2.26 -11.49 -0.03 2.50 16 10 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 11 C -0.11 -4.62 5.02 30.68 0.15 -4.47 16 12 C -0.11 -3.19 6.09 30.65 0.19 -3.00 16 13 C 0.06 1.36 5.32 86.33 0.46 1.81 16 14 N -0.47 -12.90 4.67 -690.85 -3.22 -16.12 16 15 C 0.24 5.51 5.57 39.56 0.22 5.73 16 16 C -0.15 -1.84 9.12 22.22 0.20 -1.64 16 17 C 0.10 1.25 9.40 22.00 0.21 1.45 16 18 C -0.09 -1.97 6.85 36.34 0.25 -1.73 16 19 N 0.04 1.17 4.46 -46.47 -0.21 0.96 16 20 O -0.13 -3.19 18.36 18.88 0.35 -2.84 16 21 O -0.23 -7.49 18.47 18.89 0.35 -7.14 16 22 C 0.06 1.68 7.19 42.58 0.31 1.99 16 23 N -0.34 -10.74 11.95 -57.35 -0.69 -11.43 16 24 O 0.37 11.48 11.67 139.25 1.63 13.10 16 25 N -0.32 -10.31 9.86 -55.28 -0.55 -10.85 16 26 C -0.02 -0.57 6.65 44.02 0.29 -0.27 16 27 C 0.07 2.82 3.27 86.33 0.28 3.10 16 28 H 0.26 13.65 8.31 -92.71 -0.77 12.88 16 29 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 3.13 6.15 -2.39 -0.01 3.12 16 31 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.13 1.58 7.16 -2.39 -0.02 1.56 16 35 H 0.22 0.80 7.60 -2.91 -0.02 0.77 16 36 H 0.22 0.86 7.47 -2.91 -0.02 0.83 16 37 H 0.05 2.25 7.19 -2.39 -0.02 2.23 16 38 H 0.04 1.69 7.10 -2.39 -0.02 1.68 16 Total: -1.00 -66.95 321.68 4.25 -62.70 By element: Atomic # 1 Polarization: -3.65 SS G_CDS: 1.12 Total: -2.53 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: 3.20 Total: -21.07 kcal Atomic # 7 Polarization: -82.22 SS G_CDS: -4.42 Total: -86.64 kcal Atomic # 8 Polarization: 0.80 SS G_CDS: 2.32 Total: 3.12 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Total: -66.95 4.25 -62.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853761738.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.468 kcal (2) G-P(sol) polarization free energy of solvation -66.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds