Wall clock time and date at job start Tue Mar 31 2020 12:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00021 * 2 1 4 4 H 1.48500 * 109.47118 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46851 * 299.99905 * 3 2 1 6 6 H 1.48505 * 109.47107 * 59.99552 * 3 2 1 7 7 C 1.37879 * 120.00388 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00393 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99649 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.46887 * 179.97438 * 9 7 2 11 11 C 1.42903 * 113.99723 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46742 * 179.97438 * 11 10 9 13 13 O 1.45198 * 109.47030 * 65.00388 * 12 11 10 14 14 C 1.34738 * 117.00008 * 179.97438 * 13 12 11 15 15 O 1.21494 * 119.99954 * 359.97438 * 14 13 12 16 16 C 1.47555 * 119.99878 * 179.97438 * 14 13 12 17 17 C 1.38607 * 119.77498 * 0.02562 * 16 14 13 18 18 C 1.40201 * 119.48145 * 179.97438 * 17 16 14 19 19 C 1.40692 * 121.09150 * 180.02562 * 18 17 16 20 20 C 1.36068 * 119.67400 * 179.97438 * 19 18 17 21 21 C 1.39388 * 120.96344 * 0.02562 * 20 19 18 22 22 C 1.36119 * 121.02200 * 359.97438 * 21 20 19 23 23 C 1.40535 * 119.72216 * 0.02562 * 22 21 20 24 24 C 1.40580 * 121.01024 * 180.02562 * 23 22 21 25 25 C 1.36031 * 120.01226 * 179.97438 * 24 23 22 26 26 F 1.35105 * 119.61353 * 180.28282 * 25 24 23 27 27 H 0.96995 * 120.00113 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46893 * 59.99543 * 9 7 2 29 29 H 1.09005 * 109.46814 * 300.00040 * 9 7 2 30 30 H 1.08996 * 109.47259 * 60.00185 * 11 10 9 31 31 H 1.09001 * 109.47177 * 299.99683 * 11 10 9 32 32 H 1.08994 * 109.47407 * 305.00258 * 12 11 10 33 33 H 1.09003 * 109.46915 * 184.99491 * 12 11 10 34 34 H 1.07997 * 120.26144 * 0.02562 * 17 16 14 35 35 H 1.08004 * 120.16340 * 359.95655 * 19 18 17 36 36 H 1.07997 * 119.51617 * 180.02562 * 20 19 18 37 37 H 1.08002 * 119.48889 * 180.02562 * 21 20 19 38 38 H 1.07994 * 120.14071 * 180.02562 * 22 21 20 39 39 H 1.07991 * 119.99358 * 359.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5853 0.0005 11 6 1.5652 -4.8754 0.0000 12 6 2.6482 -5.9561 -0.0006 13 8 3.3995 -5.8891 1.2401 14 6 4.3974 -6.7802 1.3998 15 8 4.6330 -7.5914 0.5266 16 6 5.2040 -6.7710 2.6354 17 6 4.9307 -5.8439 3.6288 18 6 5.7006 -5.8409 4.8005 19 6 5.4523 -4.9154 5.8307 20 6 6.2170 -4.9387 6.9559 21 6 7.2459 -5.8672 7.1046 22 6 7.5155 -6.7778 6.1294 23 6 6.7480 -6.7859 4.9522 24 6 7.0025 -7.7145 3.9280 25 6 6.2465 -7.7045 2.7971 26 9 6.4945 -8.6043 1.8203 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 0.9454 -4.9822 -0.8902 31 1 0.9448 -4.9827 0.8897 32 1 3.3217 -5.7952 -0.8423 33 1 2.1822 -6.9374 -0.0906 34 1 4.1304 -5.1299 3.5017 35 1 4.6588 -4.1899 5.7288 36 1 6.0240 -4.2274 7.7453 37 1 7.8379 -5.8647 8.0080 38 1 8.3159 -7.4911 6.2598 39 1 7.7983 -8.4360 4.0390 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885162775.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:30 Heat of formation + Delta-G solvation = -154.483571 kcal Electronic energy + Delta-G solvation = -25055.545560 eV Core-core repulsion = 21034.914868 eV Total energy + Delta-G solvation = -4020.630692 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.04018 -41.79721 -41.01346 -38.79712 -37.56709 -37.11692 -34.95660 -33.97205 -32.07369 -31.24147 -30.22922 -29.02341 -26.02900 -24.63098 -24.40799 -23.63417 -23.07951 -22.38231 -19.56705 -18.96184 -18.77897 -18.44986 -18.00498 -17.84835 -17.18855 -16.69063 -16.63716 -16.40706 -16.26495 -16.05128 -15.66668 -15.41319 -15.09180 -14.57460 -14.39186 -14.29857 -14.18874 -14.10037 -13.74994 -13.25043 -13.14513 -12.92020 -12.73750 -12.56542 -12.43815 -12.14465 -12.04100 -11.99566 -11.81840 -11.62392 -11.27578 -11.12466 -10.91122 -10.28589 -9.75691 -9.00855 -8.32948 -6.44995 -0.92741 -0.43715 0.79796 1.11492 1.40394 1.41385 1.42019 1.56222 1.93328 2.34147 2.95316 2.99609 3.01089 3.03280 3.27946 3.46126 3.78235 3.80149 3.87611 3.94465 4.06949 4.18417 4.32668 4.35942 4.41142 4.46752 4.55739 4.64376 4.73589 4.77632 4.84615 4.86077 5.06987 5.14606 5.16808 5.22296 5.46766 5.52636 5.54048 5.59007 5.92744 5.94432 6.46737 6.52087 6.78807 7.26706 8.79432 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.011483 B = 0.003158 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.745598 B = 8862.988263 C =10745.359699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.981 3.019 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.059 0.941 9 C 0.208 3.792 10 O -0.409 6.409 11 C 0.056 3.944 12 C 0.078 3.922 13 O -0.348 6.348 14 C 0.505 3.495 15 O -0.528 6.528 16 C -0.185 4.185 17 C 0.008 3.992 18 C -0.096 4.096 19 C -0.099 4.099 20 C -0.118 4.118 21 C -0.086 4.086 22 C -0.120 4.120 23 C -0.015 4.015 24 C -0.140 4.140 25 C 0.127 3.873 26 F -0.135 7.135 27 H 0.271 0.729 28 H -0.008 1.008 29 H -0.008 1.008 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.110 0.890 34 H 0.156 0.844 35 H 0.143 0.857 36 H 0.154 0.846 37 H 0.161 0.839 38 H 0.162 0.838 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.098 -14.608 16.843 26.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.804 3.196 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.587 4.587 8 H 0.077 0.923 9 C 0.133 3.867 10 O -0.330 6.330 11 C -0.021 4.021 12 C 0.005 3.995 13 O -0.264 6.264 14 C 0.351 3.649 15 O -0.419 6.419 16 C -0.186 4.186 17 C -0.011 4.011 18 C -0.096 4.096 19 C -0.117 4.117 20 C -0.136 4.136 21 C -0.103 4.103 22 C -0.137 4.137 23 C -0.015 4.015 24 C -0.158 4.158 25 C 0.107 3.893 26 F -0.113 7.113 27 H 0.080 0.920 28 H 0.009 0.991 29 H 0.010 0.990 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.128 0.872 34 H 0.174 0.826 35 H 0.161 0.839 36 H 0.171 0.829 37 H 0.179 0.821 38 H 0.179 0.821 39 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 14.173 -14.731 16.509 26.276 hybrid contribution -0.518 0.447 -0.981 1.196 sum 13.654 -14.284 15.528 25.132 Atomic orbital electron populations 1.70059 1.07644 1.28639 1.50435 1.25918 0.95955 1.03241 0.93879 0.85162 0.78591 0.77436 0.78380 1.19062 1.19699 1.19391 1.21403 0.94039 0.90925 1.52344 0.92280 1.19883 0.88538 0.84302 0.93971 1.87870 1.35563 1.14172 1.95351 1.22636 0.94192 0.83173 1.02109 1.23278 0.93115 0.99547 0.83597 1.86603 1.43618 1.54042 1.42151 1.21282 0.78788 0.77933 0.86897 1.90841 1.68532 1.38784 1.43775 1.19150 1.00760 1.03437 0.95297 1.21873 0.96076 0.93220 0.89897 1.18300 0.97279 0.98671 0.95317 1.21403 1.00241 0.97216 0.92823 1.21345 0.95065 0.99335 0.97861 1.21463 0.96249 0.93021 0.99610 1.21366 0.99949 1.00701 0.91707 1.18215 0.94688 0.93516 0.95095 1.21120 1.01523 1.01889 0.91280 1.17361 0.95716 0.88700 0.87496 1.91549 1.93221 1.64967 1.61563 0.91971 0.99061 0.99020 0.89772 0.92161 0.91015 0.87228 0.82649 0.83884 0.82860 0.82104 0.82092 0.80623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.12 13.29 21.45 0.28 -54.84 16 2 C 0.01 0.50 5.46 84.66 0.46 0.96 16 3 Si 0.98 44.07 29.54 68.60 2.03 46.10 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 6 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 7 C -0.55 -32.74 9.43 25.60 0.24 -32.50 16 8 H 0.06 3.53 7.81 -2.91 -0.02 3.50 16 9 C 0.21 11.58 5.69 71.24 0.41 11.99 16 10 O -0.41 -20.17 10.30 -145.57 -1.50 -21.67 16 11 C 0.06 2.03 6.33 71.98 0.46 2.49 16 12 C 0.08 2.55 5.85 71.98 0.42 2.97 16 13 O -0.35 -12.29 9.39 -53.82 -0.51 -12.79 16 14 C 0.50 17.48 7.89 70.28 0.55 18.04 16 15 O -0.53 -20.41 15.07 19.85 0.30 -20.11 16 16 C -0.18 -5.40 5.87 -20.09 -0.12 -5.52 16 17 C 0.01 0.19 9.36 22.84 0.21 0.40 16 18 C -0.10 -1.97 5.74 -21.30 -0.12 -2.09 16 19 C -0.10 -1.62 9.77 22.36 0.22 -1.40 16 20 C -0.12 -1.35 9.95 22.04 0.22 -1.13 16 21 C -0.09 -0.78 9.95 22.05 0.22 -0.56 16 22 C -0.12 -1.34 9.76 22.34 0.22 -1.12 16 23 C -0.01 -0.26 5.75 -21.25 -0.12 -0.39 16 24 C -0.14 -2.65 9.69 22.33 0.22 -2.43 16 25 C 0.13 3.37 7.21 22.40 0.16 3.53 16 26 F -0.13 -4.11 15.46 44.97 0.70 -3.42 16 27 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 28 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 29 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 30 H 0.08 2.74 8.14 -2.39 -0.02 2.73 16 31 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 34 H 0.16 3.87 7.57 -2.91 -0.02 3.85 16 35 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 36 H 0.15 0.98 8.06 -2.91 -0.02 0.96 16 37 H 0.16 0.43 8.06 -2.91 -0.02 0.40 16 38 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 39 H 0.18 2.15 8.06 -2.92 -0.02 2.13 16 Total: -1.00 -75.27 350.86 6.02 -69.26 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: 1.07 Total: 4.23 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 3.64 Total: -6.75 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.28 Total: -54.84 kcal Atomic # 8 Polarization: -52.87 SS G_CDS: -1.71 Total: -54.58 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.70 Total: -3.42 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -75.27 6.02 -69.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885162775.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.227 kcal (2) G-P(sol) polarization free energy of solvation -75.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds