Wall clock time and date at job start Tue Mar 31 2020 11:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 114.00021 * 2 1 4 4 H 1.09007 * 109.46769 * 30.00050 * 3 2 1 5 5 C 1.52997 * 109.47375 * 149.99929 * 3 2 1 6 6 C 1.50703 * 109.46934 * 295.00276 * 5 3 2 7 7 O 1.21269 * 120.00395 * 0.02562 * 6 5 3 8 8 N 1.34781 * 119.99526 * 179.97438 * 6 5 3 9 9 C 1.37206 * 120.00407 * 359.97438 * 8 6 5 10 10 H 1.08000 * 119.99772 * 47.28638 * 9 8 6 11 11 C 1.38894 * 120.00149 * 227.29182 * 9 8 6 12 12 N 1.31404 * 119.99961 * 11.66661 * 11 9 8 13 13 Si 1.86799 * 119.99827 * 191.66715 * 11 9 8 14 14 H 1.48503 * 109.47191 * 59.99798 * 13 11 9 15 15 H 1.48500 * 109.47361 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47349 * 300.00126 * 13 11 9 17 17 C 1.39426 * 119.99754 * 180.02562 * 8 6 5 18 18 C 1.39067 * 119.69935 * 192.81937 * 17 8 6 19 19 C 1.38382 * 119.10053 * 180.02562 * 18 17 8 20 20 C 1.38826 * 118.49148 * 359.97438 * 19 18 17 21 21 C 1.38148 * 119.31389 * 0.25962 * 20 19 18 22 22 N 1.31888 * 120.85023 * 359.47310 * 21 20 19 23 23 C 1.53000 * 109.47387 * 270.00249 * 3 2 1 24 24 F 1.39903 * 109.46862 * 300.00236 * 23 3 2 25 25 F 1.39902 * 109.46991 * 59.99436 * 23 3 2 26 26 F 1.39891 * 109.47318 * 179.97438 * 23 3 2 27 27 H 1.09000 * 109.47296 * 59.99804 * 1 2 3 28 28 H 1.08998 * 109.46704 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47049 * 299.99990 * 1 2 3 30 30 H 1.08994 * 109.47214 * 175.00358 * 5 3 2 31 31 H 1.09001 * 109.47021 * 55.00340 * 5 3 2 32 32 H 0.97005 * 119.99687 * 174.96550 * 12 11 9 33 33 H 1.08003 * 120.44736 * 0.03331 * 18 17 8 34 34 H 1.08002 * 120.75205 * 180.02562 * 19 18 17 35 35 H 1.07998 * 120.34309 * 179.97438 * 20 19 18 36 36 H 1.07994 * 119.57583 * 179.74326 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 3.3589 1.2634 0.7212 6 6 3.1416 0.9237 2.1733 7 8 2.0187 0.7335 2.5901 8 7 4.1953 0.8302 3.0085 9 6 5.4658 1.0438 2.5366 10 1 5.6747 1.9044 1.9184 11 6 6.4834 0.1532 2.8537 12 7 6.1952 -1.0042 3.4052 13 14 8.2614 0.6007 2.4963 14 1 8.6202 1.8350 3.2399 15 1 9.1476 -0.5107 2.9260 16 1 8.4299 0.8339 1.0395 17 6 3.9943 0.5154 4.3518 18 6 5.0337 0.6798 5.2609 19 6 4.8208 0.3630 6.5911 20 6 3.5706 -0.1086 6.9676 21 6 2.5852 -0.2519 6.0100 22 7 2.8156 0.0630 4.7501 23 6 2.2177 1.7715 -1.4425 24 9 3.0715 0.8808 -2.1020 25 9 0.9844 1.8100 -2.1020 26 9 2.7861 3.0497 -1.4425 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.8426 2.2371 0.6444 31 1 3.9931 0.5053 0.2617 32 1 6.8970 -1.6559 3.5598 33 1 5.9941 1.0498 4.9333 34 1 5.6091 0.4808 7.3199 35 1 3.3718 -0.3652 7.9976 36 1 1.6124 -0.6223 6.2975 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892473380.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:11 Heat of formation + Delta-G solvation = -192.089245 kcal Electronic energy + Delta-G solvation = -27824.493107 eV Core-core repulsion = 23280.294932 eV Total energy + Delta-G solvation = -4544.198175 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.17704 -48.70887 -48.62603 -41.52480 -39.98620 -38.81672 -36.82281 -33.86733 -33.55027 -32.74839 -30.92379 -28.13571 -27.46549 -27.09941 -24.52301 -23.81845 -23.00648 -21.11132 -19.98349 -19.73444 -19.36046 -19.05345 -17.76555 -17.55124 -17.29394 -16.77109 -16.46294 -16.16050 -15.93546 -15.68697 -15.52756 -15.44062 -15.33962 -15.07808 -14.99802 -14.81926 -14.79472 -14.43622 -14.41646 -13.67912 -13.51917 -13.23175 -13.08557 -13.06249 -12.87144 -12.67073 -12.36965 -12.23357 -12.12114 -11.19622 -10.89249 -10.77831 -10.66441 -10.41146 -9.70902 -8.80641 -8.27220 -6.32571 0.55564 0.77195 1.45677 1.49550 1.53539 1.58523 2.02194 2.25230 2.35148 2.50763 2.71563 2.91483 3.03454 3.27185 3.48571 3.73906 3.79489 3.94408 4.22869 4.31991 4.39891 4.45180 4.53661 4.57133 4.66362 4.75178 4.80489 4.82245 5.16149 5.38498 5.43476 5.59288 5.86537 5.90144 6.15481 6.40804 7.00928 7.18066 7.53174 7.99264 8.66949 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.013591 B = 0.005378 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.660303 B = 5205.137294 C = 6746.981955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.372 6.372 3 C 0.073 3.927 4 H 0.118 0.882 5 C -0.116 4.116 6 C 0.486 3.514 7 O -0.545 6.545 8 N -0.401 5.401 9 C -0.381 4.381 10 H 0.113 0.887 11 C 0.020 3.980 12 N -0.879 5.879 13 Si 0.983 3.017 14 H -0.258 1.258 15 H -0.286 1.286 16 H -0.259 1.259 17 C 0.360 3.640 18 C -0.171 4.171 19 C -0.074 4.074 20 C -0.220 4.220 21 C 0.093 3.907 22 N -0.531 5.531 23 C 0.440 3.560 24 F -0.180 7.180 25 F -0.180 7.180 26 F -0.175 7.175 27 H 0.065 0.935 28 H 0.102 0.898 29 H 0.048 0.952 30 H 0.130 0.870 31 H 0.105 0.895 32 H 0.274 0.726 33 H 0.121 0.879 34 H 0.152 0.848 35 H 0.159 0.841 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.731 5.026 -2.944 6.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.289 6.289 3 C 0.011 3.989 4 H 0.135 0.865 5 C -0.156 4.156 6 C 0.276 3.724 7 O -0.423 6.423 8 N -0.113 5.113 9 C -0.507 4.507 10 H 0.130 0.870 11 C -0.187 4.187 12 N -0.512 5.512 13 Si 0.805 3.195 14 H -0.182 1.182 15 H -0.211 1.211 16 H -0.183 1.183 17 C 0.130 3.870 18 C -0.195 4.195 19 C -0.100 4.100 20 C -0.242 4.242 21 C -0.066 4.066 22 N -0.247 5.247 23 C 0.385 3.615 24 F -0.162 7.162 25 F -0.161 7.161 26 F -0.157 7.157 27 H 0.083 0.917 28 H 0.120 0.880 29 H 0.067 0.933 30 H 0.148 0.852 31 H 0.123 0.877 32 H 0.084 0.916 33 H 0.139 0.861 34 H 0.170 0.830 35 H 0.177 0.823 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -4.775 4.537 -3.389 7.408 hybrid contribution 1.456 0.033 0.109 1.461 sum -3.319 4.570 -3.280 6.531 Atomic orbital electron populations 1.23157 0.78553 1.04533 1.01196 1.88059 1.22618 1.24335 1.93937 1.22969 0.98358 0.89168 0.88355 0.86477 1.21515 0.95529 1.06368 0.92141 1.20970 0.84592 0.78564 0.88281 1.90608 1.23851 1.49926 1.77882 1.41397 1.07511 1.58946 1.03469 1.19762 0.83296 1.11496 1.36144 0.86958 1.26354 1.04426 0.93624 0.94305 1.70071 1.35806 1.06059 1.39246 0.85146 0.76346 0.78247 0.79779 1.18213 1.21140 1.18292 1.19030 0.89469 0.92271 0.86206 1.21463 0.99568 1.05007 0.93422 1.21616 0.97821 0.95689 0.94873 1.22081 0.94143 1.06265 1.01680 1.22898 1.00202 0.95866 0.87611 1.67525 1.22379 1.15025 1.19785 1.21270 0.74005 0.75313 0.90867 1.93185 1.71208 1.68433 1.83360 1.93144 1.43247 1.96213 1.83519 1.93185 1.85187 1.40350 1.96929 0.91682 0.88012 0.93298 0.85212 0.87699 0.91620 0.86099 0.83006 0.82296 0.81789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 10.70 113.37 1.21 1.81 16 2 O -0.37 -13.43 9.51 -135.19 -1.29 -14.72 16 3 C 0.07 2.38 1.72 30.59 0.05 2.43 16 4 H 0.12 3.61 7.60 -2.38 -0.02 3.59 16 5 C -0.12 -4.37 3.94 29.85 0.12 -4.25 16 6 C 0.49 23.26 7.47 87.66 0.65 23.92 16 7 O -0.54 -27.98 13.76 10.80 0.15 -27.84 16 8 N -0.40 -20.35 2.70 -464.37 -1.25 -21.61 16 9 C -0.38 -18.16 7.66 84.01 0.64 -17.52 16 10 H 0.11 4.84 7.39 -2.91 -0.02 4.82 16 11 C 0.02 0.93 3.59 84.91 0.31 1.24 16 12 N -0.88 -45.91 11.57 21.65 0.25 -45.66 16 13 Si 0.98 36.76 29.57 68.60 2.03 38.79 16 14 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 15 H -0.29 -10.85 7.11 99.48 0.71 -10.15 16 16 H -0.26 -9.26 7.11 99.48 0.71 -8.56 16 17 C 0.36 18.45 6.38 132.90 0.85 19.29 16 18 C -0.17 -7.86 7.78 22.50 0.18 -7.68 16 19 C -0.07 -2.78 10.17 22.44 0.23 -2.55 16 20 C -0.22 -7.64 10.11 22.39 0.23 -7.42 16 21 C 0.09 3.76 11.18 84.66 0.95 4.70 16 22 N -0.53 -26.81 8.00 -192.95 -1.54 -28.36 16 23 C 0.44 12.71 2.85 71.98 0.21 12.91 16 24 F -0.18 -5.65 16.83 44.97 0.76 -4.90 16 25 F -0.18 -4.82 15.50 44.97 0.70 -4.13 16 26 F -0.18 -4.76 16.71 44.97 0.75 -4.01 16 27 H 0.06 1.52 6.49 -2.39 -0.02 1.51 16 28 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.05 1.42 8.08 -2.39 -0.02 1.40 16 30 H 0.13 4.21 7.31 -2.39 -0.02 4.20 16 31 H 0.10 4.16 7.90 -2.39 -0.02 4.14 16 32 H 0.27 13.65 8.32 -92.70 -0.77 12.88 16 33 H 0.12 5.67 6.03 -2.91 -0.02 5.65 16 34 H 0.15 4.47 8.06 -2.91 -0.02 4.45 16 35 H 0.16 4.03 8.06 -2.91 -0.02 4.01 16 36 H 0.17 5.49 8.06 -2.91 -0.02 5.47 16 Total: -1.00 -65.35 320.45 7.30 -58.04 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 1.13 Total: 27.48 kcal Atomic # 6 Polarization: 21.28 SS G_CDS: 5.62 Total: 26.89 kcal Atomic # 7 Polarization: -93.08 SS G_CDS: -2.54 Total: -95.62 kcal Atomic # 8 Polarization: -41.41 SS G_CDS: -1.14 Total: -42.55 kcal Atomic # 9 Polarization: -15.24 SS G_CDS: 2.21 Total: -13.03 kcal Atomic # 14 Polarization: 36.76 SS G_CDS: 2.03 Total: 38.79 kcal Total: -65.35 7.30 -58.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892473380.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.044 kcal (2) G-P(sol) polarization free energy of solvation -65.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds