Wall clock time and date at job start Tue Mar 31 2020 12:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99792 * 2 1 4 4 H 1.48501 * 109.47382 * 270.00391 * 3 2 1 5 5 H 1.48498 * 109.47407 * 30.00468 * 3 2 1 6 6 H 1.48507 * 109.47057 * 150.00326 * 3 2 1 7 7 C 1.37876 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99808 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00201 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47352 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.47144 * 180.02562 * 10 9 7 12 12 O 1.42898 * 109.47381 * 180.02562 * 11 10 9 13 13 C 1.34937 * 117.00598 * 179.97438 * 12 11 10 14 14 O 1.21655 * 119.99497 * 359.97438 * 13 12 11 15 15 C 1.46272 * 120.00447 * 179.97438 * 13 12 11 16 16 C 1.37905 * 125.96706 * 180.02562 * 15 13 12 17 17 C 1.39763 * 106.76770 * 180.23001 * 16 15 13 18 18 C 1.36620 * 107.11849 * 359.63094 * 17 16 15 19 19 C 1.47628 * 125.65281 * 180.17128 * 18 17 16 20 20 C 1.39661 * 120.16879 * 309.98113 * 19 18 17 21 21 C 1.37894 * 119.87255 * 179.74707 * 20 19 18 22 22 C 1.38427 * 120.20751 * 0.55639 * 21 20 19 23 23 C 1.38274 * 120.34215 * 359.69291 * 22 21 20 24 24 C 1.38229 * 120.12434 * 0.02946 * 23 22 21 25 25 F 1.35101 * 120.10784 * 179.97438 * 24 23 22 26 26 O 1.34336 * 108.69163 * 0.37378 * 18 17 16 27 27 H 0.96999 * 120.00220 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46782 * 59.99868 * 9 7 2 29 29 H 1.08996 * 109.47149 * 300.00419 * 9 7 2 30 30 H 1.08998 * 109.47072 * 59.99838 * 10 9 7 31 31 H 1.08996 * 109.47053 * 300.00132 * 10 9 7 32 32 H 1.08998 * 109.47446 * 59.99848 * 11 10 9 33 33 H 1.09010 * 109.47251 * 299.99932 * 11 10 9 34 34 H 1.08002 * 126.61240 * 359.95846 * 16 15 13 35 35 H 1.08004 * 126.44324 * 179.77620 * 17 16 15 36 36 H 1.08005 * 120.06568 * 0.02937 * 20 19 18 37 37 H 1.07993 * 119.89864 * 180.25721 * 21 20 19 38 38 H 1.08002 * 119.82927 * 179.72245 * 22 21 20 39 39 H 1.08001 * 119.93876 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9870 -0.0012 12 8 2.4090 -6.0732 -0.0006 13 6 1.8933 -7.3202 -0.0005 14 8 0.6873 -7.4795 -0.0005 15 6 2.7844 -8.4802 -0.0005 16 6 2.3926 -9.8024 -0.0009 17 6 3.5611 -10.5692 0.0047 18 6 4.6136 -9.6982 -0.0001 19 6 6.0413 -10.0737 -0.0004 20 6 6.5239 -10.9989 0.9279 21 6 7.8576 -11.3492 0.9188 22 6 8.7214 -10.7783 0.0001 23 6 8.2540 -9.8575 -0.9196 24 6 6.9187 -9.5005 -0.9266 25 9 6.4625 -8.6004 -1.8250 26 8 4.1341 -8.4433 0.0000 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8896 30 1 2.8720 -3.6043 0.8894 31 1 2.8720 -3.6043 -0.8905 32 1 0.8540 -5.0446 -0.8913 33 1 0.8534 -5.0451 0.8887 34 1 1.3784 -10.1737 -0.0007 35 1 3.6208 -11.6475 0.0093 36 1 5.8529 -11.4425 1.6486 37 1 8.2303 -12.0677 1.6337 38 1 9.7657 -11.0537 0.0013 39 1 8.9336 -9.4164 -1.6337 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914624626.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:39 Heat of formation + Delta-G solvation = -101.620764 kcal Electronic energy + Delta-G solvation = -24560.127703 eV Core-core repulsion = 20541.789314 eV Total energy + Delta-G solvation = -4018.338389 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.27228 -42.91718 -40.17645 -39.33002 -36.70578 -34.00845 -33.64916 -32.70388 -31.69979 -31.12920 -29.34481 -27.11536 -24.89243 -23.62594 -23.13787 -22.22303 -21.69237 -20.65817 -20.31114 -18.66960 -18.03537 -17.23298 -17.08342 -16.74497 -16.57673 -16.06236 -16.01235 -15.77742 -15.21156 -14.55720 -14.45720 -13.96796 -13.82413 -13.65690 -13.49477 -13.33504 -13.23595 -12.79667 -12.44684 -12.21800 -12.20179 -11.89557 -11.67897 -10.96574 -10.91362 -10.63117 -10.53336 -10.43575 -10.39177 -9.91202 -9.70250 -9.51107 -9.36232 -9.14810 -8.63471 -8.36938 -6.01791 -4.04625 0.12463 0.64056 0.82253 1.92544 2.15327 2.80334 2.86628 3.07824 3.32654 3.38594 3.42498 3.67261 4.00831 4.20511 4.38062 4.45236 4.49527 4.64027 4.72940 4.80828 5.07041 5.24755 5.31578 5.34148 5.42617 5.50992 5.51922 5.56995 5.58795 5.68271 5.79876 5.95118 6.00743 6.25794 6.36344 6.51678 6.55404 6.80059 6.99403 7.62117 7.73156 7.76621 7.96667 8.37871 9.01531 9.59502 11.09681 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.016101 B = 0.002353 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.651447 B =11899.024513 C =13277.157276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.064 3.936 12 O -0.339 6.339 13 C 0.546 3.454 14 O -0.486 6.486 15 C -0.048 4.048 16 C -0.110 4.110 17 C -0.194 4.194 18 C 0.057 3.943 19 C -0.065 4.065 20 C -0.059 4.059 21 C -0.131 4.131 22 C -0.076 4.076 23 C -0.155 4.155 24 C 0.128 3.872 25 F -0.124 7.124 26 O -0.132 6.132 27 H 0.261 0.739 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.170 0.830 35 H 0.164 0.836 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.007 -28.913 0.943 33.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.009 4.009 12 O -0.254 6.254 13 C 0.390 3.610 14 O -0.376 6.376 15 C -0.099 4.099 16 C -0.129 4.129 17 C -0.213 4.213 18 C 0.005 3.995 19 C -0.066 4.066 20 C -0.077 4.077 21 C -0.150 4.150 22 C -0.094 4.094 23 C -0.173 4.173 24 C 0.109 3.891 25 F -0.103 7.103 26 O -0.026 6.026 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.187 0.813 35 H 0.182 0.818 36 H 0.159 0.841 37 H 0.156 0.844 38 H 0.156 0.844 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 15.630 -28.451 0.908 32.474 hybrid contribution 0.062 1.096 -0.228 1.121 sum 15.691 -27.355 0.681 31.543 Atomic orbital electron populations 1.69966 1.06073 1.26747 1.50599 1.25031 0.94888 0.99363 0.95219 0.86540 0.79808 0.83210 0.78136 1.20611 1.21194 1.19812 1.21174 0.93143 0.90667 1.50926 0.92422 1.19057 0.93813 0.90680 0.97737 1.21783 0.99947 0.90749 1.02140 1.23255 0.91527 0.83704 1.02389 1.86266 1.42211 1.14308 1.82658 1.19135 0.85489 0.82538 0.73853 1.90955 1.13889 1.86401 1.46330 1.21307 0.80008 0.93987 1.14594 1.22126 1.00841 0.89898 1.00048 1.21724 0.90208 1.00837 1.08526 1.20534 0.92999 0.81900 1.04110 1.17815 0.88012 1.01601 0.99209 1.21127 0.96048 0.94799 0.95749 1.21163 0.92847 1.01086 0.99855 1.21226 1.00488 0.94350 0.93328 1.21179 0.93516 1.00662 1.01994 1.17881 0.92427 0.89742 0.89057 1.91588 1.89409 1.64404 1.64864 1.84279 1.20374 1.28973 1.69013 0.92902 0.96159 0.96163 0.92044 0.92032 0.91315 0.91328 0.81291 0.81843 0.84106 0.84429 0.84417 0.83916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.14 13.29 55.43 0.74 -26.41 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.95 9.11 -34.44 -0.31 -15.27 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 10 C -0.11 -2.35 5.52 -26.74 -0.15 -2.50 16 11 C 0.06 1.25 5.38 37.15 0.20 1.45 16 12 O -0.34 -6.31 10.12 -42.64 -0.43 -6.74 16 13 C 0.55 9.35 7.91 33.96 0.27 9.62 16 14 O -0.49 -8.97 16.64 -19.38 -0.32 -9.29 16 15 C -0.05 -0.70 7.21 -36.48 -0.26 -0.96 16 16 C -0.11 -1.24 10.65 -39.13 -0.42 -1.66 16 17 C -0.19 -1.83 10.69 -39.60 -0.42 -2.26 16 18 C 0.06 0.66 6.36 -36.34 -0.23 0.43 16 19 C -0.07 -0.62 5.79 -104.93 -0.61 -1.22 16 20 C -0.06 -0.37 9.69 -39.18 -0.38 -0.75 16 21 C -0.13 -0.60 10.03 -39.64 -0.40 -1.00 16 22 C -0.08 -0.36 10.04 -39.50 -0.40 -0.76 16 23 C -0.15 -1.07 10.01 -39.57 -0.40 -1.47 16 24 C 0.13 1.28 7.29 -38.98 -0.28 0.99 16 25 F -0.12 -1.57 16.79 2.25 0.04 -1.53 16 26 O -0.13 -1.94 10.65 3.32 0.04 -1.91 16 27 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.07 1.31 8.13 -51.93 -0.42 0.89 16 33 H 0.07 1.30 8.13 -51.92 -0.42 0.88 16 34 H 0.17 1.59 8.06 -52.49 -0.42 1.16 16 35 H 0.16 0.98 8.06 -52.48 -0.42 0.55 16 36 H 0.14 0.59 8.06 -52.48 -0.42 0.17 16 37 H 0.14 0.27 8.06 -52.49 -0.42 -0.16 16 38 H 0.14 0.29 8.06 -52.49 -0.42 -0.14 16 39 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 LS Contribution 357.68 15.07 5.39 5.39 Total: -1.00 -33.67 357.68 -8.21 -41.89 By element: Atomic # 1 Polarization: -0.33 SS G_CDS: -4.61 Total: -4.94 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -4.02 Total: -13.32 kcal Atomic # 7 Polarization: -27.14 SS G_CDS: 0.74 Total: -26.41 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.72 Total: -17.94 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.67 -8.21 -41.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914624626.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.733 kcal (2) G-P(sol) polarization free energy of solvation -33.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds