Wall clock time and date at job start Tue Mar 31 2020 12:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99792 * 2 1 4 4 H 1.48501 * 109.47382 * 270.00391 * 3 2 1 5 5 H 1.48498 * 109.47407 * 30.00468 * 3 2 1 6 6 H 1.48507 * 109.47057 * 150.00326 * 3 2 1 7 7 C 1.37876 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99808 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00201 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47352 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.47144 * 180.02562 * 10 9 7 12 12 O 1.42898 * 109.47381 * 180.02562 * 11 10 9 13 13 C 1.34937 * 117.00598 * 179.97438 * 12 11 10 14 14 O 1.21655 * 119.99497 * 359.97438 * 13 12 11 15 15 C 1.46272 * 120.00447 * 179.97438 * 13 12 11 16 16 C 1.37905 * 125.96706 * 180.02562 * 15 13 12 17 17 C 1.39763 * 106.76770 * 180.23001 * 16 15 13 18 18 C 1.36620 * 107.11849 * 359.63094 * 17 16 15 19 19 C 1.47628 * 125.65281 * 180.17128 * 18 17 16 20 20 C 1.39661 * 120.16879 * 309.98113 * 19 18 17 21 21 C 1.37894 * 119.87255 * 179.74707 * 20 19 18 22 22 C 1.38427 * 120.20751 * 0.55639 * 21 20 19 23 23 C 1.38274 * 120.34215 * 359.69291 * 22 21 20 24 24 C 1.38229 * 120.12434 * 0.02946 * 23 22 21 25 25 F 1.35101 * 120.10784 * 179.97438 * 24 23 22 26 26 O 1.34336 * 108.69163 * 0.37378 * 18 17 16 27 27 H 0.96999 * 120.00220 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46782 * 59.99868 * 9 7 2 29 29 H 1.08996 * 109.47149 * 300.00419 * 9 7 2 30 30 H 1.08998 * 109.47072 * 59.99838 * 10 9 7 31 31 H 1.08996 * 109.47053 * 300.00132 * 10 9 7 32 32 H 1.08998 * 109.47446 * 59.99848 * 11 10 9 33 33 H 1.09010 * 109.47251 * 299.99932 * 11 10 9 34 34 H 1.08002 * 126.61240 * 359.95846 * 16 15 13 35 35 H 1.08004 * 126.44324 * 179.77620 * 17 16 15 36 36 H 1.08005 * 120.06568 * 0.02937 * 20 19 18 37 37 H 1.07993 * 119.89864 * 180.25721 * 21 20 19 38 38 H 1.08002 * 119.82927 * 179.72245 * 22 21 20 39 39 H 1.08001 * 119.93876 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9870 -0.0012 12 8 2.4090 -6.0732 -0.0006 13 6 1.8933 -7.3202 -0.0005 14 8 0.6873 -7.4795 -0.0005 15 6 2.7844 -8.4802 -0.0005 16 6 2.3926 -9.8024 -0.0009 17 6 3.5611 -10.5692 0.0047 18 6 4.6136 -9.6982 -0.0001 19 6 6.0413 -10.0737 -0.0004 20 6 6.5239 -10.9989 0.9279 21 6 7.8576 -11.3492 0.9188 22 6 8.7214 -10.7783 0.0001 23 6 8.2540 -9.8575 -0.9196 24 6 6.9187 -9.5005 -0.9266 25 9 6.4625 -8.6004 -1.8250 26 8 4.1341 -8.4433 0.0000 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8896 30 1 2.8720 -3.6043 0.8894 31 1 2.8720 -3.6043 -0.8905 32 1 0.8540 -5.0446 -0.8913 33 1 0.8534 -5.0451 0.8887 34 1 1.3784 -10.1737 -0.0007 35 1 3.6208 -11.6475 0.0093 36 1 5.8529 -11.4425 1.6486 37 1 8.2303 -12.0677 1.6337 38 1 9.7657 -11.0537 0.0013 39 1 8.9336 -9.4164 -1.6337 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914624626.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:38 Heat of formation + Delta-G solvation = -119.396323 kcal Electronic energy + Delta-G solvation = -24560.898509 eV Core-core repulsion = 20541.789314 eV Total energy + Delta-G solvation = -4019.109195 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.05829 -43.85842 -41.56569 -39.83227 -38.16609 -36.00148 -34.52142 -33.76992 -33.38346 -31.61774 -30.33055 -28.91031 -26.11241 -24.86626 -24.04032 -23.15713 -22.55585 -22.26529 -21.62895 -19.71987 -18.90182 -18.66662 -18.19766 -18.05964 -17.59396 -17.45774 -16.93679 -16.70775 -16.51534 -15.76200 -15.61528 -15.21600 -14.96433 -14.46830 -14.33962 -14.19881 -14.15366 -14.10665 -13.97092 -13.83044 -13.33974 -12.87043 -12.85460 -12.56482 -12.52561 -12.20889 -12.17037 -12.13736 -11.56695 -11.49469 -11.28710 -11.28009 -10.59573 -10.56558 -9.89963 -9.42415 -8.24000 -6.35719 -0.68593 0.00306 0.16274 1.04008 1.16110 1.39564 1.41303 1.52658 1.63673 1.76372 2.39578 2.56755 3.09532 3.10133 3.17950 3.62259 3.67147 3.76925 3.91893 3.95557 4.02270 4.26021 4.26918 4.30698 4.35472 4.38343 4.65971 4.72476 4.76708 4.81371 4.99009 4.99952 5.03060 5.17859 5.19367 5.25687 5.37916 5.44250 5.59330 5.61792 5.76784 5.80995 6.16067 6.41337 6.79201 7.33540 8.88245 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.016101 B = 0.002353 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.651447 B =11899.024513 C =13277.157276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.970 3.030 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.028 3.972 10 C -0.095 4.095 11 C 0.074 3.926 12 O -0.349 6.349 13 C 0.546 3.454 14 O -0.508 6.508 15 C -0.096 4.096 16 C -0.084 4.084 17 C -0.183 4.183 18 C 0.059 3.941 19 C -0.093 4.093 20 C -0.055 4.055 21 C -0.120 4.120 22 C -0.066 4.066 23 C -0.160 4.160 24 C 0.089 3.911 25 F -0.153 7.153 26 O -0.163 6.163 27 H 0.265 0.735 28 H -0.001 1.001 29 H 0.000 1.000 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.190 0.810 35 H 0.206 0.794 36 H 0.164 0.836 37 H 0.175 0.825 38 H 0.172 0.828 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.638 -31.398 1.873 36.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.199 4.199 3 Si 0.794 3.206 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.081 0.919 9 C -0.009 4.009 10 C -0.132 4.132 11 C 0.001 3.999 12 O -0.265 6.265 13 C 0.393 3.607 14 O -0.400 6.400 15 C -0.146 4.146 16 C -0.103 4.103 17 C -0.201 4.201 18 C 0.006 3.994 19 C -0.094 4.094 20 C -0.073 4.073 21 C -0.138 4.138 22 C -0.083 4.083 23 C -0.179 4.179 24 C 0.070 3.930 25 F -0.132 7.132 26 O -0.059 6.059 27 H 0.074 0.926 28 H 0.018 0.982 29 H 0.019 0.981 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.207 0.793 35 H 0.223 0.777 36 H 0.182 0.818 37 H 0.192 0.808 38 H 0.190 0.810 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 18.271 -30.959 1.837 35.995 hybrid contribution -0.605 1.666 -0.487 1.838 sum 17.666 -29.293 1.351 34.234 Atomic orbital electron populations 1.70096 1.07814 1.28001 1.51283 1.26014 0.95844 1.03509 0.94506 0.85373 0.78602 0.78058 0.78567 1.19684 1.20534 1.18705 1.21599 0.93657 0.91926 1.51139 0.91938 1.18925 0.94139 0.92170 0.95713 1.21486 0.98860 0.90500 1.02375 1.22921 0.91141 0.83403 1.02468 1.86236 1.42065 1.15001 1.83241 1.19494 0.85875 0.82357 0.72999 1.90922 1.14729 1.86541 1.47790 1.21076 0.80205 0.93932 1.19399 1.22535 1.02433 0.88602 0.96725 1.22170 0.88419 1.02409 1.07125 1.21279 0.94675 0.81166 1.02264 1.18071 0.87079 1.03402 1.00818 1.21472 0.97357 0.93518 0.94956 1.21649 0.91894 1.00586 0.99669 1.21699 1.02233 0.92575 0.91829 1.21441 0.92355 1.01186 1.02895 1.18373 0.94035 0.90715 0.89892 1.91508 1.89901 1.65707 1.66045 1.84238 1.20457 1.31109 1.70101 0.92586 0.98238 0.98128 0.91652 0.91822 0.91389 0.91206 0.79319 0.77722 0.81850 0.80775 0.81011 0.82929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.66 13.29 21.45 0.28 -57.38 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 3 Si 0.97 45.08 29.54 68.60 2.03 47.11 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 6 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 7 C -0.55 -31.91 9.11 25.60 0.23 -31.67 16 8 H 0.06 3.51 7.74 -2.91 -0.02 3.48 16 9 C 0.03 1.52 4.97 29.85 0.15 1.66 16 10 C -0.09 -4.24 5.52 30.59 0.17 -4.07 16 11 C 0.07 3.01 5.38 71.98 0.39 3.39 16 12 O -0.35 -13.65 10.12 -57.10 -0.58 -14.22 16 13 C 0.55 19.58 7.91 69.91 0.55 20.13 16 14 O -0.51 -19.44 16.64 19.33 0.32 -19.12 16 15 C -0.10 -2.89 7.21 24.28 0.18 -2.72 16 16 C -0.08 -1.80 10.65 22.56 0.24 -1.56 16 17 C -0.18 -3.07 10.69 22.26 0.24 -2.83 16 18 C 0.06 1.31 6.36 24.37 0.15 1.47 16 19 C -0.09 -1.66 5.79 -20.06 -0.12 -1.77 16 20 C -0.06 -0.52 9.69 22.53 0.22 -0.30 16 21 C -0.12 -0.58 10.03 22.23 0.22 -0.36 16 22 C -0.07 -0.39 10.04 22.32 0.22 -0.17 16 23 C -0.16 -2.00 10.01 22.28 0.22 -1.77 16 24 C 0.09 1.78 7.29 22.66 0.17 1.95 16 25 F -0.15 -4.16 16.79 44.97 0.76 -3.40 16 26 O -0.16 -5.00 10.65 -9.72 -0.10 -5.10 16 27 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 28 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 29 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 30 H 0.06 2.85 8.14 -2.39 -0.02 2.83 16 31 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 32 H 0.07 2.73 8.13 -2.39 -0.02 2.71 16 33 H 0.07 2.78 8.13 -2.38 -0.02 2.76 16 34 H 0.19 3.20 8.06 -2.91 -0.02 3.17 16 35 H 0.21 1.59 8.06 -2.91 -0.02 1.57 16 36 H 0.16 0.71 8.06 -2.91 -0.02 0.69 16 37 H 0.17 -0.37 8.06 -2.91 -0.02 -0.40 16 38 H 0.17 -0.15 8.06 -2.91 -0.02 -0.17 16 39 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -76.83 357.68 7.48 -69.35 By element: Atomic # 1 Polarization: -0.09 SS G_CDS: 1.07 Total: 0.98 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: 3.70 Total: -18.21 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: 0.28 Total: -57.38 kcal Atomic # 8 Polarization: -38.09 SS G_CDS: -0.36 Total: -38.45 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.76 Total: -3.40 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -76.83 7.48 -69.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914624626.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.046 kcal (2) G-P(sol) polarization free energy of solvation -76.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds