Wall clock time and date at job start Tue Mar 31 2020 12:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86793 * 119.99858 * 2 1 4 4 H 1.48502 * 109.47199 * 239.99960 * 3 2 1 5 5 H 1.48498 * 109.47495 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46997 * 120.00203 * 3 2 1 7 7 C 1.39935 * 119.99728 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99665 * 169.01994 * 7 2 1 9 9 C 1.41438 * 120.00092 * 349.01692 * 7 2 1 10 10 C 1.40791 * 120.17579 * 149.75882 * 9 7 2 11 11 C 1.37718 * 120.05347 * 180.02562 * 10 9 7 12 12 C 1.38359 * 120.41981 * 359.67437 * 11 10 9 13 13 C 1.39933 * 120.34980 * 0.59812 * 12 11 10 14 14 C 1.47751 * 120.03452 * 179.69348 * 13 12 11 15 15 O 1.21471 * 120.00572 * 179.72826 * 14 13 12 16 16 O 1.34721 * 119.99916 * 359.73485 * 14 13 12 17 17 C 1.35887 * 117.00637 * 184.40427 * 16 14 13 18 18 C 1.39854 * 119.56782 * 69.01121 * 17 16 14 19 19 C 1.35985 * 120.93357 * 179.75314 * 18 17 16 20 20 C 1.40594 * 119.72828 * 0.52458 * 19 18 17 21 21 C 1.40527 * 121.21445 * 179.71879 * 20 19 18 22 22 C 1.36103 * 119.67104 * 180.02562 * 21 20 19 23 23 C 1.39377 * 120.99364 * 359.97438 * 22 21 20 24 24 C 1.36094 * 120.98234 * 0.02562 * 23 22 21 25 25 C 1.40574 * 119.65413 * 359.97438 * 24 23 22 26 26 C 1.36581 * 119.56939 * 249.29894 * 17 16 14 27 27 C 1.39094 * 119.93728 * 359.42649 * 13 12 11 28 28 H 0.97005 * 120.00246 * 359.97438 * 1 2 3 29 29 H 1.08004 * 119.97119 * 0.02562 * 10 9 7 30 30 H 1.08003 * 119.79248 * 179.97438 * 11 10 9 31 31 H 1.08003 * 119.82655 * 180.30233 * 12 11 10 32 32 H 1.08003 * 119.53776 * 0.03147 * 18 17 16 33 33 H 1.08000 * 120.13828 * 180.26393 * 19 18 17 34 34 H 1.07997 * 120.16494 * 0.02950 * 21 20 19 35 35 H 1.08001 * 119.50677 * 180.02562 * 22 21 20 36 36 H 1.08002 * 119.51198 * 180.02562 * 23 22 21 37 37 H 1.07999 * 120.17205 * 179.97438 * 24 23 22 38 38 H 1.07995 * 120.19176 * 359.97438 * 26 17 16 39 39 H 1.08007 * 120.20843 * 180.24757 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0960 1.6963 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0730 -1.2204 -0.1787 9 6 1.3201 -2.4257 0.2323 10 6 1.7771 -3.6216 -0.3534 11 6 1.1051 -4.8019 -0.1255 12 6 -0.0170 -4.8242 0.6836 13 6 -0.4896 -3.6448 1.2699 14 6 -1.6925 -3.6755 2.1272 15 8 -2.0993 -2.6522 2.6399 16 8 -2.3381 -4.8385 2.3406 17 6 -3.4880 -4.7825 3.0624 18 6 -4.6185 -4.1692 2.5130 19 6 -5.7849 -4.1020 3.2088 20 6 -5.8569 -4.6458 4.5033 21 6 -7.0446 -4.5885 5.2523 22 6 -7.0790 -5.1246 6.5028 23 6 -5.9524 -5.7321 7.0545 24 6 -4.7850 -5.8062 6.3589 25 6 -4.7112 -5.2636 5.0642 26 6 -3.5231 -5.3208 4.3172 27 6 0.1775 -2.4443 1.0492 28 1 -0.4851 0.8401 0.0004 29 1 2.6553 -3.6134 -0.9820 30 1 1.4591 -5.7169 -0.5772 31 1 -0.5338 -5.7561 0.8598 32 1 -4.5656 -3.7468 1.5204 33 1 -6.6513 -3.6290 2.7704 34 1 -7.9256 -4.1213 4.8376 35 1 -7.9933 -5.0794 7.0759 36 1 -6.0066 -6.1502 8.0488 37 1 -3.9199 -6.2795 6.7993 38 1 -2.6425 -5.7881 4.7325 39 1 -0.1811 -1.5320 1.5028 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915801074.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:36 Heat of formation + Delta-G solvation = -17.361043 kcal Electronic energy + Delta-G solvation = -24317.761913 eV Core-core repulsion = 20733.846525 eV Total energy + Delta-G solvation = -3583.915388 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.05211 -39.83150 -37.73667 -36.60623 -35.47147 -33.76202 -32.77861 -30.61633 -29.90682 -29.58627 -29.01028 -25.49357 -24.35313 -23.51731 -22.32558 -22.07040 -21.06379 -20.15686 -18.21859 -17.65328 -17.23481 -17.01138 -16.11824 -15.65870 -15.18296 -14.99198 -14.79205 -14.63211 -14.06659 -13.74810 -13.56562 -13.46166 -13.31480 -13.18382 -12.76139 -12.58769 -12.28511 -11.78770 -11.45798 -11.41303 -11.23347 -11.17539 -11.05923 -10.82774 -10.59400 -10.54415 -10.32078 -10.04774 -9.79999 -9.63548 -9.31721 -8.56916 -7.95967 -7.83179 -7.57527 -6.81921 -4.50891 0.40917 0.84921 1.82912 1.93975 2.69445 2.73087 3.04911 3.06522 3.09137 3.37354 3.45979 3.88825 4.05676 4.49144 4.55431 4.70802 4.78437 4.90665 5.01173 5.15143 5.21814 5.27381 5.44448 5.45667 5.68065 5.81489 5.88480 6.04281 6.08086 6.13855 6.29673 6.30972 6.38478 6.43132 6.54666 6.67614 6.79555 6.85491 6.87907 7.04476 7.13393 7.22893 7.58950 7.66415 7.83853 8.03287 8.38156 8.45420 8.70512 8.74680 10.13903 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.019711 B = 0.002857 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.158705 B = 9797.457514 C =10603.999578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.071 3.929 3 Si 0.915 3.085 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.463 4.463 8 H 0.082 0.918 9 C 0.096 3.904 10 C -0.193 4.193 11 C -0.106 4.106 12 C -0.188 4.188 13 C -0.117 4.117 14 C 0.511 3.489 15 O -0.497 6.497 16 O -0.297 6.297 17 C 0.108 3.892 18 C -0.117 4.117 19 C -0.092 4.092 20 C -0.057 4.057 21 C -0.102 4.102 22 C -0.122 4.122 23 C -0.118 4.118 24 C -0.103 4.103 25 C -0.038 4.038 26 C -0.115 4.115 27 C -0.079 4.079 28 H 0.285 0.715 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.130 0.870 33 H 0.133 0.867 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.128 0.872 38 H 0.137 0.863 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.040 -8.433 8.750 16.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.146 4.146 3 Si 0.739 3.261 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.492 4.492 8 H 0.100 0.900 9 C 0.094 3.906 10 C -0.212 4.212 11 C -0.124 4.124 12 C -0.207 4.207 13 C -0.118 4.118 14 C 0.358 3.642 15 O -0.384 6.384 16 O -0.213 6.213 17 C 0.067 3.933 18 C -0.136 4.136 19 C -0.110 4.110 20 C -0.057 4.057 21 C -0.120 4.120 22 C -0.140 4.140 23 C -0.136 4.136 24 C -0.121 4.121 25 C -0.038 4.038 26 C -0.133 4.133 27 C -0.098 4.098 28 H 0.096 0.904 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.148 0.852 33 H 0.151 0.849 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.146 0.854 38 H 0.154 0.846 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.371 -7.930 8.911 16.480 hybrid contribution 0.224 0.805 -0.108 0.843 sum -11.147 -7.125 8.803 15.891 Atomic orbital electron populations 1.69728 1.07459 1.29799 1.35210 1.25936 0.94893 1.01486 0.92328 0.86254 0.79944 0.79961 0.79937 1.18951 1.20247 1.18783 1.19512 0.96107 0.90148 1.43446 0.89996 1.17550 0.91283 0.92744 0.89070 1.21287 1.02625 0.93375 1.03961 1.20537 0.95981 0.96997 0.98930 1.20614 0.99867 0.95888 1.04377 1.18773 0.94291 0.96444 1.02311 1.22261 0.83351 0.79873 0.78674 1.90809 1.66323 1.33541 1.47684 1.84729 1.34011 1.36632 1.65969 1.18305 0.85276 0.98964 0.90797 1.21120 0.92556 0.98785 1.01093 1.20867 0.97801 0.99079 0.93299 1.18134 0.93749 0.99084 0.94743 1.21011 0.96774 0.99513 0.94679 1.20832 0.98555 0.98852 0.95751 1.20829 0.93059 0.99746 1.00004 1.21018 0.98429 0.99257 0.93381 1.17852 0.92779 0.98638 0.94569 1.20957 0.98286 1.02204 0.91880 1.21678 0.96019 0.95192 0.96944 0.90426 0.88122 0.88303 0.87703 0.85185 0.84869 0.85522 0.86047 0.85976 0.85413 0.84553 0.84657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.72 10.95 55.55 0.61 -20.11 16 2 C 0.07 1.77 5.24 -17.34 -0.09 1.68 16 3 Si 0.91 18.52 29.57 -169.99 -5.03 13.50 16 4 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.26 -5.29 7.11 56.52 0.40 -4.88 16 7 C -0.46 -11.85 9.05 -37.73 -0.34 -12.19 16 8 H 0.08 1.98 7.87 -52.49 -0.41 1.57 16 9 C 0.10 2.47 5.53 -106.87 -0.59 1.88 16 10 C -0.19 -4.43 9.78 -38.81 -0.38 -4.81 16 11 C -0.11 -2.23 10.01 -39.73 -0.40 -2.63 16 12 C -0.19 -4.04 9.62 -38.90 -0.37 -4.41 16 13 C -0.12 -2.77 5.87 -105.06 -0.62 -3.39 16 14 C 0.51 11.48 7.67 34.62 0.27 11.75 16 15 O -0.50 -12.21 15.75 -19.24 -0.30 -12.51 16 16 O -0.30 -5.81 9.24 -24.71 -0.23 -6.03 16 17 C 0.11 1.88 5.23 -39.58 -0.21 1.68 16 18 C -0.12 -1.87 9.18 -39.79 -0.37 -2.23 16 19 C -0.09 -1.23 9.76 -39.50 -0.39 -1.62 16 20 C -0.06 -0.75 5.74 -106.81 -0.61 -1.36 16 21 C -0.10 -1.07 9.77 -39.49 -0.39 -1.45 16 22 C -0.12 -1.14 9.95 -39.92 -0.40 -1.53 16 23 C -0.12 -1.12 9.95 -39.93 -0.40 -1.52 16 24 C -0.10 -1.14 9.77 -39.47 -0.39 -1.53 16 25 C -0.04 -0.52 5.74 -106.84 -0.61 -1.14 16 26 C -0.11 -1.74 9.68 -39.34 -0.38 -2.12 16 27 C -0.08 -2.05 8.19 -38.42 -0.31 -2.37 16 28 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 29 H 0.10 2.13 8.06 -52.48 -0.42 1.70 16 30 H 0.10 1.74 8.06 -52.48 -0.42 1.32 16 31 H 0.10 2.02 7.59 -52.48 -0.40 1.62 16 32 H 0.13 2.05 8.06 -52.48 -0.42 1.63 16 33 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 35 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 38 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 39 H 0.14 3.78 5.92 -52.48 -0.31 3.47 16 LS Contribution 344.77 15.07 5.20 5.20 Total: -1.00 -29.07 344.77 -10.79 -39.86 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -4.06 Total: 7.43 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: -6.97 Total: -27.32 kcal Atomic # 7 Polarization: -20.72 SS G_CDS: 0.61 Total: -20.11 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.53 Total: -18.54 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.07 -10.79 -39.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915801074.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.495 kcal (2) G-P(sol) polarization free energy of solvation -29.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds