Wall clock time and date at job start Tue Mar 31 2020 12:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86793 * 119.99858 * 2 1 4 4 H 1.48502 * 109.47199 * 239.99960 * 3 2 1 5 5 H 1.48498 * 109.47495 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46997 * 120.00203 * 3 2 1 7 7 C 1.39935 * 119.99728 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99665 * 169.01994 * 7 2 1 9 9 C 1.41438 * 120.00092 * 349.01692 * 7 2 1 10 10 C 1.40791 * 120.17579 * 149.75882 * 9 7 2 11 11 C 1.37718 * 120.05347 * 180.02562 * 10 9 7 12 12 C 1.38359 * 120.41981 * 359.67437 * 11 10 9 13 13 C 1.39933 * 120.34980 * 0.59812 * 12 11 10 14 14 C 1.47751 * 120.03452 * 179.69348 * 13 12 11 15 15 O 1.21471 * 120.00572 * 179.72826 * 14 13 12 16 16 O 1.34721 * 119.99916 * 359.73485 * 14 13 12 17 17 C 1.35887 * 117.00637 * 184.40427 * 16 14 13 18 18 C 1.39854 * 119.56782 * 69.01121 * 17 16 14 19 19 C 1.35985 * 120.93357 * 179.75314 * 18 17 16 20 20 C 1.40594 * 119.72828 * 0.52458 * 19 18 17 21 21 C 1.40527 * 121.21445 * 179.71879 * 20 19 18 22 22 C 1.36103 * 119.67104 * 180.02562 * 21 20 19 23 23 C 1.39377 * 120.99364 * 359.97438 * 22 21 20 24 24 C 1.36094 * 120.98234 * 0.02562 * 23 22 21 25 25 C 1.40574 * 119.65413 * 359.97438 * 24 23 22 26 26 C 1.36581 * 119.56939 * 249.29894 * 17 16 14 27 27 C 1.39094 * 119.93728 * 359.42649 * 13 12 11 28 28 H 0.97005 * 120.00246 * 359.97438 * 1 2 3 29 29 H 1.08004 * 119.97119 * 0.02562 * 10 9 7 30 30 H 1.08003 * 119.79248 * 179.97438 * 11 10 9 31 31 H 1.08003 * 119.82655 * 180.30233 * 12 11 10 32 32 H 1.08003 * 119.53776 * 0.03147 * 18 17 16 33 33 H 1.08000 * 120.13828 * 180.26393 * 19 18 17 34 34 H 1.07997 * 120.16494 * 0.02950 * 21 20 19 35 35 H 1.08001 * 119.50677 * 180.02562 * 22 21 20 36 36 H 1.08002 * 119.51198 * 180.02562 * 23 22 21 37 37 H 1.07999 * 120.17205 * 179.97438 * 24 23 22 38 38 H 1.07995 * 120.19176 * 359.97438 * 26 17 16 39 39 H 1.08007 * 120.20843 * 180.24757 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0960 1.6963 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0730 -1.2204 -0.1787 9 6 1.3201 -2.4257 0.2323 10 6 1.7771 -3.6216 -0.3534 11 6 1.1051 -4.8019 -0.1255 12 6 -0.0170 -4.8242 0.6836 13 6 -0.4896 -3.6448 1.2699 14 6 -1.6925 -3.6755 2.1272 15 8 -2.0993 -2.6522 2.6399 16 8 -2.3381 -4.8385 2.3406 17 6 -3.4880 -4.7825 3.0624 18 6 -4.6185 -4.1692 2.5130 19 6 -5.7849 -4.1020 3.2088 20 6 -5.8569 -4.6458 4.5033 21 6 -7.0446 -4.5885 5.2523 22 6 -7.0790 -5.1246 6.5028 23 6 -5.9524 -5.7321 7.0545 24 6 -4.7850 -5.8062 6.3589 25 6 -4.7112 -5.2636 5.0642 26 6 -3.5231 -5.3208 4.3172 27 6 0.1775 -2.4443 1.0492 28 1 -0.4851 0.8401 0.0004 29 1 2.6553 -3.6134 -0.9820 30 1 1.4591 -5.7169 -0.5772 31 1 -0.5338 -5.7561 0.8598 32 1 -4.5656 -3.7468 1.5204 33 1 -6.6513 -3.6290 2.7704 34 1 -7.9256 -4.1213 4.8376 35 1 -7.9933 -5.0794 7.0759 36 1 -6.0066 -6.1502 8.0488 37 1 -3.9199 -6.2795 6.7993 38 1 -2.6425 -5.7881 4.7325 39 1 -0.1811 -1.5320 1.5028 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915801074.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:35 Heat of formation + Delta-G solvation = -28.971376 kcal Electronic energy + Delta-G solvation = -24318.265375 eV Core-core repulsion = 20733.846525 eV Total energy + Delta-G solvation = -3584.418850 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.45923 -40.99852 -39.43812 -38.19130 -36.65376 -35.60008 -33.75274 -32.34958 -31.43021 -30.94465 -30.06947 -27.34840 -25.88103 -24.52567 -23.63871 -23.01265 -22.87861 -21.76183 -19.86853 -19.17096 -18.26607 -18.17050 -17.93733 -17.06591 -16.66435 -16.55449 -16.21241 -15.72278 -15.46513 -15.20934 -14.91288 -14.65019 -14.53143 -14.39325 -14.31472 -14.03022 -13.63156 -13.40842 -12.98698 -12.84248 -12.62789 -12.57548 -12.38083 -12.26829 -12.10121 -12.02464 -11.72086 -11.59061 -11.44127 -11.13375 -11.00540 -9.68092 -9.59439 -9.43888 -8.93122 -8.65549 -6.44692 -0.58858 -0.19566 0.03257 0.93048 0.95710 1.37292 1.44122 1.49002 1.50264 1.69496 2.11956 2.19250 2.71818 3.06510 3.54511 3.57081 3.65522 3.77687 3.93519 4.01968 4.19235 4.23496 4.34633 4.38702 4.44078 4.55697 4.65522 4.80207 4.84852 4.92193 5.00352 5.06327 5.10392 5.17559 5.20677 5.25891 5.33900 5.39707 5.54144 5.54648 5.70687 5.78269 5.84411 5.97693 6.00442 6.18679 6.49305 6.76493 6.84426 6.85513 8.31967 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.019711 B = 0.002857 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.158705 B = 9797.457514 C =10603.999578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.027 3.973 3 Si 0.987 3.013 4 H -0.253 1.253 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.495 4.495 8 H 0.089 0.911 9 C 0.066 3.934 10 C -0.192 4.192 11 C -0.100 4.100 12 C -0.174 4.174 13 C -0.130 4.130 14 C 0.513 3.487 15 O -0.528 6.528 16 O -0.290 6.290 17 C 0.062 3.938 18 C -0.148 4.148 19 C -0.082 4.082 20 C -0.073 4.073 21 C -0.110 4.110 22 C -0.113 4.113 23 C -0.109 4.109 24 C -0.117 4.117 25 C -0.059 4.059 26 C -0.113 4.113 27 C -0.111 4.111 28 H 0.286 0.714 29 H 0.120 0.880 30 H 0.145 0.855 31 H 0.132 0.868 32 H 0.117 0.883 33 H 0.162 0.838 34 H 0.153 0.847 35 H 0.157 0.843 36 H 0.156 0.844 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.317 -10.056 10.311 18.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.187 4.187 3 Si 0.807 3.193 4 H -0.176 1.176 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.525 4.525 8 H 0.107 0.893 9 C 0.064 3.936 10 C -0.211 4.211 11 C -0.118 4.118 12 C -0.194 4.194 13 C -0.131 4.131 14 C 0.362 3.638 15 O -0.418 6.418 16 O -0.205 6.205 17 C 0.021 3.979 18 C -0.166 4.166 19 C -0.100 4.100 20 C -0.073 4.073 21 C -0.127 4.127 22 C -0.130 4.130 23 C -0.126 4.126 24 C -0.135 4.135 25 C -0.059 4.059 26 C -0.131 4.131 27 C -0.131 4.131 28 H 0.096 0.904 29 H 0.138 0.862 30 H 0.163 0.837 31 H 0.150 0.850 32 H 0.135 0.865 33 H 0.180 0.820 34 H 0.171 0.829 35 H 0.175 0.825 36 H 0.174 0.826 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.647 -9.599 10.466 19.017 hybrid contribution 0.405 1.061 -0.396 1.203 sum -12.242 -8.538 10.069 18.004 Atomic orbital electron populations 1.69845 1.09139 1.30598 1.36755 1.26851 0.95534 1.04939 0.91355 0.85176 0.78536 0.75306 0.80278 1.17635 1.19882 1.18430 1.19820 0.96582 0.91051 1.45064 0.89315 1.17913 0.91746 0.94232 0.89747 1.21610 1.03058 0.93132 1.03347 1.20996 0.94943 0.98003 0.97881 1.21007 0.99652 0.95922 1.02785 1.18997 0.94706 0.96664 1.02732 1.22141 0.83145 0.80389 0.78089 1.90769 1.67161 1.34919 1.48934 1.84683 1.34903 1.34687 1.66249 1.18655 0.84710 1.02262 0.92242 1.21117 0.93589 1.00606 1.01296 1.21205 0.97590 0.97858 0.93332 1.18477 0.94868 0.99027 0.94892 1.21345 0.96494 0.99767 0.95121 1.21338 0.99774 0.96668 0.95261 1.21311 0.92184 0.98089 1.01065 1.21284 1.00119 0.99604 0.92483 1.18142 0.92436 0.99537 0.95768 1.21172 0.99547 1.01338 0.91063 1.21456 0.97719 0.95076 0.98844 0.90352 0.86215 0.83747 0.84972 0.86457 0.82013 0.82912 0.82500 0.82644 0.83749 0.83652 0.87824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.19 10.95 21.82 0.24 -45.96 16 2 C 0.03 1.38 5.24 85.25 0.45 1.83 16 3 Si 0.99 39.08 29.57 68.60 2.03 41.11 16 4 H -0.25 -9.40 7.11 99.48 0.71 -8.70 16 5 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 6 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 7 C -0.50 -26.35 9.05 23.47 0.21 -26.14 16 8 H 0.09 4.40 7.87 -2.91 -0.02 4.37 16 9 C 0.07 3.51 5.53 -21.32 -0.12 3.40 16 10 C -0.19 -8.76 9.78 22.77 0.22 -8.53 16 11 C -0.10 -4.02 10.01 22.18 0.22 -3.80 16 12 C -0.17 -7.38 9.62 22.71 0.22 -7.17 16 13 C -0.13 -6.40 5.87 -20.15 -0.12 -6.52 16 14 C 0.51 24.47 7.67 70.34 0.54 25.01 16 15 O -0.53 -27.95 15.75 19.93 0.31 -27.64 16 16 O -0.29 -11.86 9.24 0.39 0.00 -11.86 16 17 C 0.06 2.28 5.23 22.27 0.12 2.39 16 18 C -0.15 -4.99 9.18 22.14 0.20 -4.78 16 19 C -0.08 -2.19 9.76 22.32 0.22 -1.97 16 20 C -0.07 -1.82 5.74 -21.28 -0.12 -1.94 16 21 C -0.11 -1.94 9.77 22.33 0.22 -1.73 16 22 C -0.11 -1.59 9.95 22.05 0.22 -1.37 16 23 C -0.11 -1.62 9.95 22.05 0.22 -1.40 16 24 C -0.12 -2.32 9.77 22.34 0.22 -2.11 16 25 C -0.06 -1.56 5.74 -21.30 -0.12 -1.69 16 26 C -0.11 -3.51 9.68 22.42 0.22 -3.30 16 27 C -0.11 -6.14 8.19 23.02 0.19 -5.96 16 28 H 0.29 14.62 8.30 -92.70 -0.77 13.85 16 29 H 0.12 4.91 8.06 -2.91 -0.02 4.89 16 30 H 0.14 4.48 8.06 -2.91 -0.02 4.46 16 31 H 0.13 4.85 7.59 -2.91 -0.02 4.83 16 32 H 0.12 4.08 8.06 -2.91 -0.02 4.05 16 33 H 0.16 3.16 8.06 -2.91 -0.02 3.13 16 34 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 35 H 0.16 1.16 8.06 -2.91 -0.02 1.13 16 36 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 37 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 38 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 39 H 0.10 6.32 5.92 -2.91 -0.02 6.30 16 Total: -1.00 -68.52 344.77 6.86 -61.66 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 1.08 Total: 28.47 kcal Atomic # 6 Polarization: -48.98 SS G_CDS: 3.20 Total: -45.78 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: 0.24 Total: -45.96 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: 0.32 Total: -39.49 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Total: -68.52 6.86 -61.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915801074.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.685 kcal (2) G-P(sol) polarization free energy of solvation -68.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds