Wall clock time and date at job start Tue Mar 31 2020 12:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30277 * 126.28396 * 2 1 4 4 N 1.28666 * 109.38255 * 180.02562 * 3 2 1 5 5 C 1.30267 * 109.38114 * 0.02562 * 4 3 2 6 6 C 1.50699 * 126.28371 * 179.97438 * 5 4 3 7 7 N 1.46497 * 109.47093 * 90.02715 * 6 5 4 8 8 C 1.34780 * 120.00192 * 180.02562 * 7 6 5 9 9 O 1.21591 * 119.99621 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00301 * 179.72473 * 8 7 6 11 11 C 1.39944 * 120.00309 * 175.00734 * 10 8 7 12 12 C 1.38956 * 120.03804 * 146.08813 * 11 10 8 13 13 C 1.38157 * 120.06848 * 179.74586 * 12 11 10 14 14 C 1.38166 * 120.13611 * 0.55464 * 13 12 11 15 15 C 1.38903 * 120.07242 * 359.69532 * 14 13 12 16 16 O 1.35754 * 120.03552 * 180.02562 * 15 14 13 17 17 C 1.34821 * 117.00123 * 5.93018 * 16 15 14 18 18 H 1.08010 * 120.00239 * 5.40620 * 17 16 15 19 19 C 1.38659 * 120.00340 * 185.40879 * 17 16 15 20 20 N 1.31553 * 119.99522 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00115 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47092 * 59.99944 * 21 19 17 23 23 H 1.48502 * 109.47195 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47499 * 299.99875 * 21 19 17 25 25 C 1.38710 * 120.03577 * 326.36303 * 11 10 8 26 26 O 1.34363 * 126.28248 * 180.29274 * 2 1 3 27 27 H 1.09004 * 109.47021 * 89.97399 * 1 2 3 28 28 H 1.08996 * 109.47095 * 209.97098 * 1 2 3 29 29 H 1.08997 * 109.47094 * 329.97211 * 1 2 3 30 30 H 1.09008 * 109.47109 * 330.02912 * 6 5 4 31 31 H 1.08997 * 109.47537 * 210.02830 * 6 5 4 32 32 H 0.96991 * 120.00180 * 0.02562 * 7 6 5 33 33 H 0.96998 * 120.00033 * 355.00982 * 10 8 7 34 34 H 1.08000 * 119.96326 * 0.02562 * 12 11 10 35 35 H 1.07999 * 119.93232 * 180.27135 * 13 12 11 36 36 H 1.08002 * 119.96561 * 179.72636 * 14 13 12 37 37 H 0.96999 * 119.99913 * 180.02562 * 20 19 17 38 38 H 1.08006 * 120.06313 * 359.95252 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6761 -0.0005 5 6 3.5654 -0.6254 -0.0015 6 6 4.8176 -1.4638 -0.0029 7 7 5.2239 -1.7369 1.3779 8 6 6.3254 -2.4740 1.6230 9 8 6.9816 -2.9126 0.6980 10 7 6.7024 -2.7206 2.8931 11 6 7.7837 -3.5711 3.1496 12 6 8.6161 -3.3298 4.2358 13 6 9.6807 -4.1720 4.4926 14 6 9.9281 -5.2498 3.6642 15 6 9.1028 -5.4935 2.5738 16 8 9.3462 -6.5529 1.7607 17 6 10.3271 -7.3989 2.1347 18 1 10.8192 -7.2679 3.0872 19 6 10.7041 -8.4372 1.2966 20 7 10.1044 -8.5971 0.1367 21 14 12.0626 -9.6097 1.8152 22 1 11.6745 -10.2900 3.0769 23 1 12.2740 -10.6240 0.7513 24 1 13.3191 -8.8477 2.0299 25 6 8.0292 -4.6526 2.3165 26 8 2.3021 -1.0831 -0.0055 27 1 -0.3633 0.0005 -1.0277 28 1 -0.3633 -0.8902 0.5134 29 1 -0.3633 0.8897 0.5142 30 1 5.6145 -0.9258 -0.5165 31 1 4.6242 -2.4049 -0.5176 32 1 4.7003 -1.3874 2.1157 33 1 6.2241 -2.3087 3.6297 34 1 8.4279 -2.4856 4.8825 35 1 10.3237 -3.9849 5.3399 36 1 10.7637 -5.9039 3.8650 37 1 10.3679 -9.3236 -0.4494 38 1 7.3858 -4.8401 1.4695 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916651017.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:41 Heat of formation + Delta-G solvation = 24.732398 kcal Electronic energy + Delta-G solvation = -24772.812470 eV Core-core repulsion = 20812.165879 eV Total energy + Delta-G solvation = -3960.646592 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.70564 -40.44469 -38.76168 -36.80624 -36.63400 -35.40145 -34.14477 -33.18578 -32.22495 -30.11730 -29.29808 -28.31016 -26.68391 -25.25237 -23.33049 -22.93511 -22.31271 -21.46234 -20.75314 -18.80870 -18.33988 -17.88188 -17.47417 -17.07932 -16.23353 -15.78330 -15.22000 -15.07675 -15.02424 -14.88057 -14.27990 -14.13148 -13.85826 -13.75323 -13.58114 -13.39811 -13.26286 -12.85284 -12.76761 -12.49734 -12.29912 -11.72972 -11.52753 -11.42153 -11.19759 -10.96237 -10.79298 -10.47128 -10.27803 -9.96093 -9.76319 -9.46154 -9.26033 -8.78912 -7.66766 -7.16567 -6.39820 -3.99025 0.55307 1.68114 1.83876 2.08401 2.36679 2.63959 3.15536 3.16194 3.20151 3.23625 3.29480 3.87519 3.96976 4.10724 4.36471 4.61178 4.70791 4.76274 4.79153 5.00071 5.13905 5.15417 5.21929 5.28865 5.33690 5.63422 5.84107 5.95959 6.11324 6.21924 6.34128 6.45464 6.79751 7.01100 7.07806 7.15866 7.36225 7.49650 7.81522 7.81804 7.89360 8.04782 8.52914 9.04953 9.76526 10.78052 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.022570 B = 0.002287 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.310640 B =12237.779376 C =13132.541624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.170 3.830 3 N -0.290 5.290 4 N -0.261 5.261 5 C 0.147 3.853 6 C 0.241 3.759 7 N -0.746 5.746 8 C 0.706 3.294 9 O -0.553 6.553 10 N -0.677 5.677 11 C 0.193 3.807 12 C -0.236 4.236 13 C -0.058 4.058 14 C -0.245 4.245 15 C 0.168 3.832 16 O -0.173 6.173 17 C -0.392 4.392 18 H 0.092 0.908 19 C 0.039 3.961 20 N -0.861 5.861 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.187 4.187 26 O -0.218 6.218 27 H 0.102 0.898 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.120 0.880 31 H 0.106 0.894 32 H 0.399 0.601 33 H 0.403 0.597 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.128 0.872 37 H 0.270 0.730 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.257 14.779 3.978 23.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.041 4.041 3 N -0.138 5.138 4 N -0.109 5.109 5 C -0.065 4.065 6 C 0.115 3.885 7 N -0.406 5.406 8 C 0.406 3.594 9 O -0.427 6.427 10 N -0.325 5.325 11 C 0.100 3.900 12 C -0.257 4.257 13 C -0.076 4.076 14 C -0.265 4.265 15 C 0.113 3.887 16 O -0.076 6.076 17 C -0.468 4.468 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.495 5.495 21 Si 0.766 3.234 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.208 4.208 26 O -0.096 6.096 27 H 0.120 0.880 28 H 0.114 0.886 29 H 0.127 0.873 30 H 0.137 0.863 31 H 0.124 0.876 32 H 0.232 0.768 33 H 0.237 0.763 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.146 0.854 37 H 0.080 0.920 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.406 15.346 2.630 22.618 hybrid contribution -0.191 -1.264 0.982 1.612 sum -16.597 14.081 3.612 22.063 Atomic orbital electron populations 1.20420 0.79891 1.05966 1.05544 1.28178 0.98032 0.79549 0.98321 1.74486 0.95928 1.25510 1.17916 1.74470 1.12351 1.09022 1.15082 1.27874 0.85239 0.91612 1.01736 1.19388 0.86319 0.98204 0.84590 1.44912 1.29444 1.58749 1.07491 1.15751 0.80602 0.79189 0.83856 1.91073 1.54119 1.54787 1.42694 1.42413 1.33953 1.49891 1.06193 1.16916 0.87699 0.89263 0.96136 1.20229 0.99605 1.03788 1.02112 1.20492 0.95660 0.93765 0.97729 1.21180 1.03981 1.02166 0.99160 1.19113 0.92285 0.87639 0.89655 1.84005 1.50229 1.29982 1.43394 1.21287 1.14408 1.06913 1.04174 0.89070 1.25302 0.98490 0.97754 0.95034 1.70043 1.39883 1.30710 1.08912 0.85781 0.80010 0.79275 0.78337 1.19528 1.20333 1.19497 1.20028 1.01121 0.95852 1.03833 1.84835 1.17431 1.38261 1.69111 0.88011 0.88605 0.87317 0.86263 0.87634 0.76760 0.76273 0.87385 0.86999 0.85442 0.91986 0.85185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.18 10.51 36.00 0.38 0.20 16 2 C 0.17 1.39 8.48 -12.94 -0.11 1.28 16 3 N -0.29 -3.24 12.22 32.55 0.40 -2.84 16 4 N -0.26 -3.12 12.22 32.55 0.40 -2.72 16 5 C 0.15 1.48 7.85 -12.94 -0.10 1.38 16 6 C 0.24 2.39 6.30 -5.20 -0.03 2.35 16 7 N -0.75 -7.85 5.55 -66.41 -0.37 -8.22 16 8 C 0.71 10.62 8.30 -86.92 -0.72 9.90 16 9 O -0.55 -11.06 14.05 5.29 0.07 -10.99 16 10 N -0.68 -9.56 5.35 -14.24 -0.08 -9.64 16 11 C 0.19 3.57 6.27 -83.71 -0.53 3.05 16 12 C -0.24 -4.00 9.96 -39.35 -0.39 -4.39 16 13 C -0.06 -1.04 10.03 -39.64 -0.40 -1.44 16 14 C -0.24 -5.38 9.13 -39.36 -0.36 -5.74 16 15 C 0.17 4.22 6.64 -39.14 -0.26 3.96 16 16 O -0.17 -5.11 9.75 0.06 0.00 -5.11 16 17 C -0.39 -11.12 9.44 30.89 0.29 -10.83 16 18 H 0.09 2.37 5.30 -52.48 -0.28 2.09 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -25.79 13.67 55.48 0.76 -25.03 16 21 Si 0.94 20.74 29.55 -169.99 -5.02 15.72 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 25 C -0.19 -4.26 8.59 -39.21 -0.34 -4.60 16 26 O -0.22 -2.04 10.87 5.37 0.06 -1.98 16 27 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.10 0.15 8.14 -51.93 -0.42 -0.28 16 29 H 0.11 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.12 1.19 8.14 -51.92 -0.42 0.77 16 31 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.40 3.14 8.48 -40.82 -0.35 2.80 16 33 H 0.40 3.94 8.84 -40.82 -0.36 3.58 16 34 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 36 H 0.13 2.77 5.71 -52.49 -0.30 2.47 16 37 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.13 3.17 6.44 -52.48 -0.34 2.83 16 LS Contribution 341.46 15.07 5.15 5.15 Total: -1.00 -37.11 341.46 -5.01 -42.12 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -3.72 Total: 7.45 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -2.66 Total: -3.91 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: 1.11 Total: -48.45 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: 0.13 Total: -18.08 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -37.11 -5.01 -42.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916651017.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.856 kcal (2) G-P(sol) polarization free energy of solvation -37.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds