Wall clock time and date at job start Tue Mar 31 2020 12:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30277 * 126.28396 * 2 1 4 4 N 1.28666 * 109.38255 * 180.02562 * 3 2 1 5 5 C 1.30267 * 109.38114 * 0.02562 * 4 3 2 6 6 C 1.50699 * 126.28371 * 179.97438 * 5 4 3 7 7 N 1.46497 * 109.47093 * 90.02715 * 6 5 4 8 8 C 1.34780 * 120.00192 * 180.02562 * 7 6 5 9 9 O 1.21591 * 119.99621 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00301 * 179.72473 * 8 7 6 11 11 C 1.39944 * 120.00309 * 175.00734 * 10 8 7 12 12 C 1.38956 * 120.03804 * 146.08813 * 11 10 8 13 13 C 1.38157 * 120.06848 * 179.74586 * 12 11 10 14 14 C 1.38166 * 120.13611 * 0.55464 * 13 12 11 15 15 C 1.38903 * 120.07242 * 359.69532 * 14 13 12 16 16 O 1.35754 * 120.03552 * 180.02562 * 15 14 13 17 17 C 1.34821 * 117.00123 * 5.93018 * 16 15 14 18 18 H 1.08010 * 120.00239 * 5.40620 * 17 16 15 19 19 C 1.38659 * 120.00340 * 185.40879 * 17 16 15 20 20 N 1.31553 * 119.99522 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00115 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47092 * 59.99944 * 21 19 17 23 23 H 1.48502 * 109.47195 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47499 * 299.99875 * 21 19 17 25 25 C 1.38710 * 120.03577 * 326.36303 * 11 10 8 26 26 O 1.34363 * 126.28248 * 180.29274 * 2 1 3 27 27 H 1.09004 * 109.47021 * 89.97399 * 1 2 3 28 28 H 1.08996 * 109.47095 * 209.97098 * 1 2 3 29 29 H 1.08997 * 109.47094 * 329.97211 * 1 2 3 30 30 H 1.09008 * 109.47109 * 330.02912 * 6 5 4 31 31 H 1.08997 * 109.47537 * 210.02830 * 6 5 4 32 32 H 0.96991 * 120.00180 * 0.02562 * 7 6 5 33 33 H 0.96998 * 120.00033 * 355.00982 * 10 8 7 34 34 H 1.08000 * 119.96326 * 0.02562 * 12 11 10 35 35 H 1.07999 * 119.93232 * 180.27135 * 13 12 11 36 36 H 1.08002 * 119.96561 * 179.72636 * 14 13 12 37 37 H 0.96999 * 119.99913 * 180.02562 * 20 19 17 38 38 H 1.08006 * 120.06313 * 359.95252 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6761 -0.0005 5 6 3.5654 -0.6254 -0.0015 6 6 4.8176 -1.4638 -0.0029 7 7 5.2239 -1.7369 1.3779 8 6 6.3254 -2.4740 1.6230 9 8 6.9816 -2.9126 0.6980 10 7 6.7024 -2.7206 2.8931 11 6 7.7837 -3.5711 3.1496 12 6 8.6161 -3.3298 4.2358 13 6 9.6807 -4.1720 4.4926 14 6 9.9281 -5.2498 3.6642 15 6 9.1028 -5.4935 2.5738 16 8 9.3462 -6.5529 1.7607 17 6 10.3271 -7.3989 2.1347 18 1 10.8192 -7.2679 3.0872 19 6 10.7041 -8.4372 1.2966 20 7 10.1044 -8.5971 0.1367 21 14 12.0626 -9.6097 1.8152 22 1 11.6745 -10.2900 3.0769 23 1 12.2740 -10.6240 0.7513 24 1 13.3191 -8.8477 2.0299 25 6 8.0292 -4.6526 2.3165 26 8 2.3021 -1.0831 -0.0055 27 1 -0.3633 0.0005 -1.0277 28 1 -0.3633 -0.8902 0.5134 29 1 -0.3633 0.8897 0.5142 30 1 5.6145 -0.9258 -0.5165 31 1 4.6242 -2.4049 -0.5176 32 1 4.7003 -1.3874 2.1157 33 1 6.2241 -2.3087 3.6297 34 1 8.4279 -2.4856 4.8825 35 1 10.3237 -3.9849 5.3399 36 1 10.7637 -5.9039 3.8650 37 1 10.3679 -9.3236 -0.4494 38 1 7.3858 -4.8401 1.4695 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916651017.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:40 Heat of formation + Delta-G solvation = -8.573534 kcal Electronic energy + Delta-G solvation = -24774.256724 eV Core-core repulsion = 20812.165879 eV Total energy + Delta-G solvation = -3962.090845 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.45356 -41.77337 -40.46302 -38.42367 -37.39911 -36.51642 -35.59898 -34.24538 -33.85765 -31.29872 -30.68220 -29.58337 -27.60432 -27.23526 -24.31407 -23.79157 -23.45086 -23.05440 -22.11045 -20.07382 -19.93797 -19.00520 -18.69191 -18.19163 -17.49262 -16.95086 -16.70016 -16.34493 -16.32795 -15.89932 -15.78045 -15.61303 -15.45696 -14.88541 -14.63881 -14.23228 -14.17823 -14.03123 -13.64053 -13.56342 -13.55114 -13.17338 -13.07722 -12.91934 -12.62150 -12.35224 -12.16948 -12.14830 -11.71002 -11.35587 -11.08054 -10.75640 -10.73067 -10.48650 -9.29492 -8.83446 -8.44207 -6.13412 -0.18192 0.47741 0.74040 0.93370 1.09922 1.36133 1.47876 1.53384 1.59116 1.94720 2.20113 2.60343 2.86122 3.00770 3.20942 3.26198 3.58550 3.70890 4.00994 4.17211 4.26413 4.32625 4.40658 4.42048 4.45242 4.55567 4.69127 4.70426 4.76400 4.94795 5.03582 5.05213 5.13478 5.36194 5.46774 5.66628 5.77505 5.81375 6.05631 6.23160 6.80830 6.99565 7.06558 7.33943 7.82733 8.79486 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.022570 B = 0.002287 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.310640 B =12237.779376 C =13132.541624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.186 3.814 3 N -0.327 5.327 4 N -0.285 5.285 5 C 0.149 3.851 6 C 0.243 3.757 7 N -0.723 5.723 8 C 0.705 3.295 9 O -0.606 6.606 10 N -0.661 5.661 11 C 0.203 3.797 12 C -0.204 4.204 13 C -0.048 4.048 14 C -0.256 4.256 15 C 0.127 3.873 16 O -0.234 6.234 17 C -0.412 4.412 18 H 0.106 0.894 19 C -0.028 4.028 20 N -0.924 5.924 21 Si 1.023 2.977 22 H -0.254 1.254 23 H -0.274 1.274 24 H -0.256 1.256 25 C -0.211 4.211 26 O -0.222 6.222 27 H 0.121 0.879 28 H 0.115 0.885 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.107 0.893 32 H 0.415 0.585 33 H 0.428 0.572 34 H 0.163 0.837 35 H 0.160 0.840 36 H 0.123 0.877 37 H 0.272 0.728 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.087 16.793 7.158 25.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.024 4.024 3 N -0.174 5.174 4 N -0.133 5.133 5 C -0.063 4.063 6 C 0.117 3.883 7 N -0.383 5.383 8 C 0.406 3.594 9 O -0.484 6.484 10 N -0.311 5.311 11 C 0.108 3.892 12 C -0.225 4.225 13 C -0.066 4.066 14 C -0.275 4.275 15 C 0.076 3.924 16 O -0.141 6.141 17 C -0.488 4.488 18 H 0.123 0.877 19 C -0.225 4.225 20 N -0.563 5.563 21 Si 0.841 3.159 22 H -0.178 1.178 23 H -0.199 1.199 24 H -0.180 1.180 25 C -0.233 4.233 26 O -0.101 6.101 27 H 0.139 0.861 28 H 0.134 0.866 29 H 0.142 0.858 30 H 0.136 0.864 31 H 0.125 0.875 32 H 0.252 0.748 33 H 0.268 0.732 34 H 0.181 0.819 35 H 0.177 0.823 36 H 0.141 0.859 37 H 0.081 0.919 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -17.323 17.474 5.890 25.301 hybrid contribution -0.209 -1.537 0.124 1.556 sum -17.533 15.937 6.015 24.445 Atomic orbital electron populations 1.20812 0.76208 1.07643 1.07217 1.29221 0.99523 0.78494 0.95211 1.74444 0.95971 1.26812 1.20221 1.74404 1.13290 1.09791 1.15765 1.27622 0.85489 0.91102 1.02108 1.19357 0.86531 0.98335 0.84032 1.44626 1.27910 1.57183 1.08533 1.15895 0.81023 0.79077 0.83428 1.91064 1.56078 1.56863 1.44389 1.42174 1.33100 1.48911 1.06907 1.17021 0.88689 0.88071 0.95394 1.20850 0.97088 1.03852 1.00727 1.21022 0.96166 0.91693 0.97730 1.21327 1.03506 1.03744 0.98973 1.19661 0.94054 0.87840 0.90867 1.83966 1.52009 1.32234 1.45897 1.21850 1.14423 1.07472 1.05083 0.87654 1.26700 1.01325 0.99608 0.94862 1.70216 1.42815 1.32336 1.10912 0.84596 0.76382 0.76499 0.78376 1.17844 1.19879 1.17993 1.20060 1.00972 0.97819 1.04445 1.84860 1.17233 1.38727 1.69313 0.86085 0.86618 0.85832 0.86390 0.87467 0.74765 0.73194 0.81913 0.82275 0.85932 0.91931 0.88196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.19 10.51 71.23 0.75 0.56 16 2 C 0.19 2.73 8.48 88.34 0.75 3.48 16 3 N -0.33 -6.99 12.22 -165.50 -2.02 -9.01 16 4 N -0.28 -6.65 12.22 -165.51 -2.02 -8.67 16 5 C 0.15 2.90 7.85 88.34 0.69 3.60 16 6 C 0.24 4.76 6.30 85.63 0.54 5.30 16 7 N -0.72 -14.32 5.55 -482.29 -2.68 -17.00 16 8 C 0.71 20.76 8.30 179.05 1.49 22.25 16 9 O -0.61 -25.11 14.05 -4.00 -0.06 -25.16 16 10 N -0.66 -17.07 5.35 -317.23 -1.70 -18.76 16 11 C 0.20 7.13 6.27 38.13 0.24 7.37 16 12 C -0.20 -5.94 9.96 22.42 0.22 -5.72 16 13 C -0.05 -1.54 10.03 22.23 0.22 -1.32 16 14 C -0.26 -11.16 9.13 22.41 0.20 -10.96 16 15 C 0.13 6.69 6.64 22.56 0.15 6.84 16 16 O -0.23 -14.92 9.75 -22.69 -0.22 -15.14 16 17 C -0.41 -24.74 9.44 67.92 0.64 -24.10 16 18 H 0.11 5.69 5.30 -2.91 -0.02 5.67 16 19 C -0.03 -1.65 5.49 84.84 0.47 -1.18 16 20 N -0.92 -59.08 13.67 21.61 0.30 -58.78 16 21 Si 1.02 43.79 29.55 68.60 2.03 45.81 16 22 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 23 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 24 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 25 C -0.21 -10.02 8.59 22.51 0.19 -9.83 16 26 O -0.22 -3.86 10.87 -3.69 -0.04 -3.90 16 27 H 0.12 0.00 8.14 -2.38 -0.02 -0.02 16 28 H 0.12 -0.04 8.14 -2.39 -0.02 -0.06 16 29 H 0.12 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.12 2.40 8.14 -2.38 -0.02 2.38 16 31 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.42 5.57 8.48 -92.72 -0.79 4.78 16 33 H 0.43 6.56 8.84 -92.71 -0.82 5.74 16 34 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 35 H 0.16 3.71 8.06 -2.91 -0.02 3.69 16 36 H 0.12 5.37 5.71 -2.91 -0.02 5.35 16 37 H 0.27 15.91 8.31 -92.71 -0.77 15.13 16 38 H 0.10 5.28 6.44 -2.91 -0.02 5.26 16 Total: -1.00 -90.39 341.46 -0.31 -90.70 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: -0.45 Total: 23.64 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 6.56 Total: -3.71 kcal Atomic # 7 Polarization: -104.11 SS G_CDS: -8.12 Total: -112.23 kcal Atomic # 8 Polarization: -43.89 SS G_CDS: -0.32 Total: -44.21 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -90.39 -0.31 -90.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916651017.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.123 kcal (2) G-P(sol) polarization free energy of solvation -90.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds