Wall clock time and date at job start Tue Mar 31 2020 11:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86804 * 119.99485 * 2 1 4 4 H 1.48494 * 109.47177 * 269.99875 * 3 2 1 5 5 H 1.48505 * 109.47036 * 30.00159 * 3 2 1 6 6 H 1.48499 * 109.46776 * 149.99648 * 3 2 1 7 7 C 1.38941 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00369 * 0.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 180.02562 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.46947 * 110.99613 * 169.99842 * 13 12 10 15 15 C 1.53426 * 109.88148 * 52.91773 * 14 13 12 16 16 N 1.46527 * 108.13802 * 50.05533 * 15 14 13 17 17 C 1.37410 * 123.35432 * 343.55282 * 16 15 14 18 18 C 1.33661 * 107.05968 * 179.78616 * 17 16 15 19 19 N 1.34500 * 107.79069 * 0.08480 * 18 17 16 20 20 C 1.30872 * 109.33638 * 359.97438 * 19 18 17 21 21 C 1.50702 * 125.73832 * 179.97438 * 20 19 18 22 22 F 1.39892 * 109.47584 * 14.98068 * 21 20 19 23 23 F 1.39907 * 109.46765 * 134.97477 * 21 20 19 24 24 F 1.39894 * 109.47257 * 254.97007 * 21 20 19 25 25 C 1.47426 * 111.00145 * 294.28303 * 13 12 10 26 26 H 0.96993 * 120.00255 * 0.02562 * 1 2 3 27 27 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 28 28 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 29 29 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 30 30 H 1.09003 * 109.39787 * 173.04544 * 14 13 12 31 31 H 1.09001 * 109.40471 * 292.78576 * 14 13 12 32 32 H 1.09000 * 109.72752 * 169.71494 * 15 14 13 33 33 H 1.08999 * 109.73207 * 290.34549 * 15 14 13 34 34 H 1.07998 * 126.10351 * 180.08740 * 18 17 16 35 35 H 1.08994 * 109.77235 * 45.53533 * 25 13 12 36 36 H 1.09003 * 109.76747 * 166.31958 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4453 2.6527 0.7001 6 1 3.5455 1.4403 0.7001 7 6 2.0089 -1.2032 0.0005 8 1 1.4691 -2.1386 0.0005 9 7 3.3799 -1.2031 0.0011 10 6 4.0539 -2.3703 0.0011 11 8 3.4475 -3.4208 0.0011 12 6 5.5609 -2.3701 0.0022 13 7 6.0507 -3.7551 0.0026 14 6 7.5001 -3.8011 -0.2345 15 6 8.2211 -2.8827 0.7608 16 7 7.7362 -3.1989 2.1069 17 6 6.5866 -3.9121 2.3477 18 6 6.4585 -4.0133 3.6743 19 7 7.5012 -3.3772 4.2375 20 6 8.2689 -2.8872 3.2977 21 6 9.5381 -2.1047 3.5167 22 9 9.9618 -2.2642 4.8404 23 9 10.5308 -2.5742 2.6498 24 9 9.3003 -0.7497 3.2631 25 6 5.6922 -4.4419 1.2569 26 1 -0.4850 0.8400 -0.0004 27 1 3.8649 -0.3630 0.0007 28 1 5.9249 -1.8559 -0.8873 29 1 5.9236 -1.8566 0.8927 30 1 7.8556 -4.8236 -0.1068 31 1 7.7114 -3.4700 -1.2513 32 1 9.2962 -3.0540 0.7073 33 1 8.0024 -1.8411 0.5254 34 1 5.6603 -4.5161 4.2000 35 1 4.6501 -4.2391 1.5035 36 1 5.8431 -5.5157 1.1454 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932586055.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:24 Heat of formation + Delta-G solvation = -92.980801 kcal Electronic energy + Delta-G solvation = -27475.508817 eV Core-core repulsion = 22967.901057 eV Total energy + Delta-G solvation = -4507.607759 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.54221 -48.10853 -47.99140 -42.90073 -39.14667 -37.41995 -34.27701 -33.70088 -31.84134 -31.53602 -29.81936 -28.50143 -26.27855 -24.88735 -24.46104 -22.42859 -21.74480 -20.15766 -19.33818 -18.96264 -18.71576 -18.46623 -18.08554 -16.82123 -16.38397 -15.92668 -15.42777 -15.10679 -14.87648 -14.85660 -14.80745 -14.47634 -14.31692 -14.18950 -14.14738 -14.04445 -13.95457 -13.44810 -13.30564 -12.88830 -12.74210 -12.62652 -12.13192 -11.93365 -11.73033 -11.61272 -11.19151 -10.66738 -10.51546 -10.05442 -9.97232 -9.64717 -8.91629 -8.76983 -8.38791 -8.25890 -6.38987 -3.90945 1.36301 1.77199 2.37678 2.61919 2.96862 3.00752 3.10203 3.16350 3.54119 3.60760 3.68412 3.97457 4.03199 4.06665 4.38609 4.46637 4.50595 4.67001 4.90551 5.06408 5.12668 5.27935 5.31406 5.40056 5.53187 5.54639 5.62484 5.76697 6.03323 6.34835 6.53735 6.72015 6.81207 7.47069 7.48003 8.04349 8.49425 8.85603 9.32679 9.70004 10.73698 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.016448 B = 0.004007 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.946371 B = 6985.896796 C = 7636.409115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.045 3.955 3 Si 0.877 3.123 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.271 1.271 7 C -0.307 4.307 8 H 0.122 0.878 9 N -0.585 5.585 10 C 0.451 3.549 11 O -0.560 6.560 12 C 0.035 3.965 13 N -0.505 5.505 14 C 0.045 3.955 15 C 0.049 3.951 16 N -0.427 5.427 17 C -0.010 4.010 18 C -0.009 4.009 19 N -0.433 5.433 20 C 0.099 3.901 21 C 0.567 3.433 22 F -0.151 7.151 23 F -0.173 7.173 24 F -0.167 7.167 25 C 0.121 3.879 26 H 0.275 0.725 27 H 0.370 0.630 28 H 0.095 0.905 29 H 0.049 0.951 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.187 0.813 35 H 0.132 0.868 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.884 -3.984 2.424 21.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.159 4.159 3 Si 0.704 3.296 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.196 1.196 7 C -0.435 4.435 8 H 0.139 0.861 9 N -0.224 5.224 10 C 0.236 3.764 11 O -0.442 6.442 12 C -0.096 4.096 13 N -0.226 5.226 14 C -0.084 4.084 15 C -0.075 4.075 16 N -0.112 5.112 17 C -0.128 4.128 18 C -0.158 4.158 19 N -0.153 5.153 20 C -0.162 4.162 21 C 0.511 3.489 22 F -0.132 7.132 23 F -0.154 7.154 24 F -0.148 7.148 25 C -0.008 4.008 26 H 0.085 0.915 27 H 0.203 0.797 28 H 0.113 0.887 29 H 0.067 0.933 30 H 0.110 0.890 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.114 0.886 34 H 0.204 0.796 35 H 0.150 0.850 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 20.292 -4.652 2.724 20.996 hybrid contribution 1.158 2.090 -0.086 2.390 sum 21.450 -2.562 2.638 21.763 Atomic orbital electron populations 1.69609 1.05632 1.27648 1.48743 1.25030 0.95476 0.97961 0.97432 0.86709 0.79815 0.84165 0.78938 1.19503 1.20013 1.19624 1.19422 0.79010 0.96707 1.48375 0.86074 1.42201 1.07657 1.06071 1.66471 1.19424 0.87618 0.84719 0.84604 1.90539 1.69115 1.30630 1.53916 1.22017 0.96524 0.89344 1.01720 1.61899 1.10669 1.15567 1.34451 1.22678 0.87066 1.00040 0.98608 1.23096 1.01725 1.02884 0.79766 1.45008 1.19282 1.40360 1.06512 1.22718 0.90314 1.00870 0.98926 1.22023 0.99014 1.04487 0.90303 1.70394 1.03774 1.10936 1.30169 1.22159 1.00299 1.10587 0.83107 1.16558 0.80775 0.76769 0.74840 1.93257 1.90317 1.95272 1.34385 1.93213 1.63686 1.88444 1.70068 1.93271 1.94345 1.33331 1.93898 1.21431 0.99206 0.98620 0.81498 0.91476 0.79749 0.88729 0.93322 0.88992 0.87514 0.87771 0.88636 0.79562 0.84991 0.87927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.02 13.96 55.50 0.77 -24.25 16 2 C 0.04 1.19 5.50 -17.47 -0.10 1.10 16 3 Si 0.88 18.98 27.74 -169.99 -4.71 14.27 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 7 C -0.31 -8.35 10.16 -14.94 -0.15 -8.51 16 8 H 0.12 3.76 7.39 -52.49 -0.39 3.38 16 9 N -0.59 -13.32 5.09 -10.96 -0.06 -13.37 16 10 C 0.45 9.49 7.37 -10.98 -0.08 9.41 16 11 O -0.56 -13.68 14.01 5.55 0.08 -13.60 16 12 C 0.04 0.53 4.50 -4.97 -0.02 0.51 16 13 N -0.51 -6.74 4.70 -236.75 -1.11 -7.86 16 14 C 0.05 0.41 5.93 -3.58 -0.02 0.39 16 15 C 0.05 0.44 5.92 -3.81 -0.02 0.42 16 16 N -0.43 -5.25 2.88 -109.36 -0.31 -5.56 16 17 C -0.01 -0.14 5.89 -81.70 -0.48 -0.62 16 18 C -0.01 -0.12 11.85 -17.99 -0.21 -0.34 16 19 N -0.43 -6.56 11.08 -11.09 -0.12 -6.68 16 20 C 0.10 1.34 7.26 -155.93 -1.13 0.21 16 21 C 0.57 6.74 3.38 36.01 0.12 6.86 16 22 F -0.15 -1.89 17.16 2.25 0.04 -1.85 16 23 F -0.17 -1.78 15.87 2.25 0.04 -1.74 16 24 F -0.17 -2.01 17.30 2.25 0.04 -1.97 16 25 C 0.12 1.63 5.77 -4.70 -0.03 1.60 16 26 H 0.27 7.24 8.31 -40.82 -0.34 6.91 16 27 H 0.37 7.48 5.76 -40.82 -0.24 7.24 16 28 H 0.09 1.19 8.08 -51.93 -0.42 0.77 16 29 H 0.05 0.72 6.25 -51.93 -0.32 0.40 16 30 H 0.09 0.75 8.07 -51.93 -0.42 0.33 16 31 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.10 0.74 6.97 -51.93 -0.36 0.38 16 33 H 0.10 0.83 7.20 -51.93 -0.37 0.45 16 34 H 0.19 2.12 8.06 -52.49 -0.42 1.70 16 35 H 0.13 2.19 5.81 -51.93 -0.30 1.89 16 36 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 312.21 15.07 4.70 4.70 Total: -1.00 -32.22 312.21 -6.04 -38.26 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -3.26 Total: 8.62 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: -2.13 Total: 11.03 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: -0.83 Total: -57.72 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.08 Total: -13.60 kcal Atomic # 9 Polarization: -5.67 SS G_CDS: 0.11 Total: -5.56 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -4.71 Total: 14.27 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.22 -6.04 -38.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932586055.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.721 kcal (2) G-P(sol) polarization free energy of solvation -32.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds